CsaV3_4G010570 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G010570
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
Descriptionpolygalacturonase-like
Locationchr4 : 8455873 .. 8457170 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCAACCCAACAAAAAGTTTAGTCTTCGTTCTCTTCTTCCATTTGTTCATTCAAATTTCAAGTGCAGGCAACTACAATGTGATAACATTCGGTGCAAAACCGGATGGAAAAACTGACTCAACCCAATCATTTCTGAAAGCGTGGATGTCTGCATGTAGCTCCTTGACACGATCCACCATCAACGTCCCTAAGGGAAGGTTCTTGCTTACATCCATCACATTTAGAGGTCCATGTAAGAACAGCAACATTACATTTCAATTGAATGGAACACTCGTGGCACCTCTTGACTATAATGCTCTTGGAGATTCTAGGTATTGGATTTTGTTCACCAAAGTTAATGGAATTTCTTTCATCGGTGGCAATATTGATGGAAAAGGCACCGACTATTGGGCTTGCAAGGGCTCTGGAAAAAAATGTCCCCCGGGAGCAAGGGTATGCGTGTTAATTACTCAATACTTTATTGAATTCCAAAACTGCACATCGACTATCTTCATTAGAAAGCAGAAAAAAAACACCAAAAATATTACTTTTTACCCAAAAATTGACCAACATACTAACTTTACAATTGAGAGCTTGTTTAGATATTAATTTGAGAAAAAAAGTGCTTTCCAAACGTCTTATTTTTATTTAAACGAAAGGGGTTTAAATGCATTTTAAAAGTTATTTTGTAGTAGACATGGGACATTTTGATCTTTTTAAAATTTCATTTTTTAAATTAAAACTTGAAAATGTATTATTCCAAACAACACACCCTGAGTAAGCTACTATATATCCAAAAGCATCCAAGTGTATTTTTTAAAATTTATTGTGACATGTTTATTTATATATATATGTATAGTAACACATGTTTTCTTTTGTTTTAACAAATGAAATACAATCAATAACATTCAATTCGGCAAGCAACGTCATAATTAGTGGACTAAGATCAATCAACACTCGACAAACTCATATTGTGATCAATAGTTGCAACAATGTGATGGTCAAGAATGTGAAGATAATGGCTCCAGACCAAGGCCCCAATACTGATGGCATCCATGTGCAATCCTCCACTGCTGTAACCATCTCTTGAACTACCATTAAAACGGGAGATGATTGCATTTCTATTGGTGATGGAACAAATAATTTGTTTATGAGTGATATTAAATGTGGGCCCGCCATGGTGTAAGGTAACAAATCTAATATATGCACACACTAAAATGATGGCCGGTAATCTTTTTTTTTTTTGAGTTAATAAAATAATATGATAATAATTTCAATTAATGCAGTATCGGGAGCCTAGGAAAAGAGGTCAATGA

mRNA sequence

ATGGCCAACCCAACAAAAAGTTTAGTCTTCGTTCTCTTCTTCCATTTGTTCATTCAAATTTCAAGTGCAGGCAACTACAATGTGATAACATTCGGTGCAAAACCGGATGGAAAAACTGACTCAACCCAATCATTTCTGAAAGCGTGGATGTCTGCATGTAGCTCCTTGACACGATCCACCATCAACGTCCCTAAGGGAAGGTTCTTGCTTACATCCATCACATTTAGAGGTCCATGTAAGAACAGCAACATTACATTTCAATTGAATGGAACACTCGTGGCACCTCTTGACTATAATGCTCTTGGAGATTCTAGGTATTGGATTTTGTTCACCAAAGTTAATGGAATTTCTTTCATCGGTGGCAATATTGATGGAAAAGGCACCGACTATTGGGCTTGCAAGGGCTCTGGAAAAAAATGTCCCCCGGGAGCAAGGTATCGGGAGCCTAGGAAAAGAGGTCAATGA

Coding sequence (CDS)

ATGGCCAACCCAACAAAAAGTTTAGTCTTCGTTCTCTTCTTCCATTTGTTCATTCAAATTTCAAGTGCAGGCAACTACAATGTGATAACATTCGGTGCAAAACCGGATGGAAAAACTGACTCAACCCAATCATTTCTGAAAGCGTGGATGTCTGCATGTAGCTCCTTGACACGATCCACCATCAACGTCCCTAAGGGAAGGTTCTTGCTTACATCCATCACATTTAGAGGTCCATGTAAGAACAGCAACATTACATTTCAATTGAATGGAACACTCGTGGCACCTCTTGACTATAATGCTCTTGGAGATTCTAGGTATTGGATTTTGTTCACCAAAGTTAATGGAATTTCTTTCATCGGTGGCAATATTGATGGAAAAGGCACCGACTATTGGGCTTGCAAGGGCTCTGGAAAAAAATGTCCCCCGGGAGCAAGGTATCGGGAGCCTAGGAAAAGAGGTCAATGA

Protein sequence

MANPTKSLVFVLFFHLFIQISSAGNYNVITFGAKPDGKTDSTQSFLKAWMSACSSLTRSTINVPKGRFLLTSITFRGPCKNSNITFQLNGTLVAPLDYNALGDSRYWILFTKVNGISFIGGNIDGKGTDYWACKGSGKKCPPGARYREPRKRGQ
Homology
[Close]
BLAST of CsaV3_4G010570 vs. NCBI nr
Match: KGN53827.1 (hypothetical protein Csa_4G153300 [Cucumis sativus])

HSP 1 Score: 303.9 bits (777), Expect = 3.1e-79
Identity = 146/150 (97.33%), Postives = 147/150 (98.00%), Query Frame = 0 

Query: 1   MANPTKSLVFVLFFHLFIQISSAGNYNVITFGAKPDGKTDSTQSFLKAWMSACSSLTRST 60
           MANPTKSLVFVLFFHLFIQISSAGNYNVITFGAKPDGKTDSTQSFLKAWMSACSSLTRST
Sbjct: 1   MANPTKSLVFVLFFHLFIQISSAGNYNVITFGAKPDGKTDSTQSFLKAWMSACSSLTRST 60

Query: 61  INVPKGRFLLTSITFRGPCKNSNITFQLNGTLVAPLDYNALGDSRYWILFTKVNGISFIG 120
           INVPKGRFLLTSITFRGPCKNSNITFQLNGTLVAPLDYNALGDSRYWILFTKVNGISFIG
Sbjct: 61  INVPKGRFLLTSITFRGPCKNSNITFQLNGTLVAPLDYNALGDSRYWILFTKVNGISFIG 120

Query: 121 GNIDGKGTDYWACKGSGKKCPPGARYREPR 151
           GNIDGKGTDYWACKGSGKKCPPGAR  E +
Sbjct: 121 GNIDGKGTDYWACKGSGKKCPPGARKAEKK 150

[Close]
BLAST of CsaV3_4G010570 vs. NCBI nr
Match: XP_008460791.1 (PREDICTED: polygalacturonase-like [Cucumis melo])

HSP 1 Score: 278.1 bits (710), Expect = 1.8e-71
Identity = 132/145 (91.03%), Postives = 138/145 (95.17%), Query Frame = 0 

Query: 1   MANPTKSLVFVLFFHLFIQISSAGNYNVITFGAKPDGKTDSTQSFLKAWMSACSSLTRST 60
           MAN  KSLVF++FFHLFIQISSAG+YNVITFGAKPDGKTDSTQSFLKAW SACSSLTRST
Sbjct: 1   MANSRKSLVFIVFFHLFIQISSAGSYNVITFGAKPDGKTDSTQSFLKAWKSACSSLTRST 60

Query: 61  INVPKGRFLLTSITFRGPCKNSNITFQLNGTLVAPLDYNALGDSRYWILFTKVNGISFIG 120
           INVPKGRFLLT+ITFRGPCKN+NI F LNGTLVAPLDYNALGDS YWILFTKVNG+SFIG
Sbjct: 61  INVPKGRFLLTAITFRGPCKNNNIIFLLNGTLVAPLDYNALGDSGYWILFTKVNGVSFIG 120

Query: 121 GNIDGKGTDYWACKGSGKKCPPGAR 146
           GNIDGKGT YWACKGSGKKCPPGAR
Sbjct: 121 GNIDGKGTAYWACKGSGKKCPPGAR 145

[Close]
BLAST of CsaV3_4G010570 vs. NCBI nr
Match: XP_004142576.2 (PREDICTED: polygalacturonase-like [Cucumis sativus] >KGN66774.1 hypothetical protein Csa_1G689640 [Cucumis sativus])

HSP 1 Score: 256.5 bits (654), Expect = 5.7e-65
Identity = 123/145 (84.83%), Postives = 130/145 (89.66%), Query Frame = 0 

Query: 1   MANPTKSLVFVLFFHLFIQISSAGNYNVITFGAKPDGKTDSTQSFLKAWMSACSSLTRST 60
           MANPTKSLVF++FFHLFIQIS+A NYNVI+FGAKPDGKTDSTQSFLKAW SACSS TRST
Sbjct: 1   MANPTKSLVFIVFFHLFIQISTAANYNVISFGAKPDGKTDSTQSFLKAWTSACSSSTRST 60

Query: 61  INVPKGRFLLTSITFRGPCKNSNITFQLNGTLVAPLDYNALGDSRYWILFTKVNGISFIG 120
           INVPKGRFLLT ITFRGPCKN  ITF LNGTLVAPLDY ALGDS YWILF KV+G+SF+G
Sbjct: 61  INVPKGRFLLTPITFRGPCKN-KITFLLNGTLVAPLDYRALGDSGYWILFIKVDGVSFVG 120

Query: 121 GNIDGKGTDYWACKGSGKKCPPGAR 146
           G IDGKGT YWACK S K CPPGAR
Sbjct: 121 GTIDGKGTAYWACKNSAKNCPPGAR 144

[Close]
BLAST of CsaV3_4G010570 vs. NCBI nr
Match: XP_022989666.1 (polygalacturonase-like [Cucurbita maxima])

HSP 1 Score: 219.9 bits (559), Expect = 5.9e-54
Identity = 107/146 (73.29%), Postives = 119/146 (81.51%), Query Frame = 0 

Query: 1   MANPTKSLVFVL-FFHLFIQISSAGNYNVITFGAKPDGKTDSTQSFLKAWMSACSSLTRS 60
           MAN  K+L+ ++  F+ FIQ+SSA  YNVIT+GAKPDGKTDST+ FLKAW SAC+S T S
Sbjct: 1   MANTIKTLLLIISSFYFFIQLSSAATYNVITYGAKPDGKTDSTRPFLKAWTSACTSSTPS 60

Query: 61  TINVPKGRFLLTSITFRGPCKNSNITFQLNGTLVAPLDYNALGDSRYWILFTKVNGISFI 120
           TINVPKGRFLL  ITFRGPCKN  ITF+LNGTLVAPLD+ ALG S YWILF KVN +SF 
Sbjct: 61  TINVPKGRFLLKPITFRGPCKN-KITFRLNGTLVAPLDFRALGSSGYWILFIKVNDVSFF 120

Query: 121 GGNIDGKGTDYWACKGSGKKCPPGAR 146
           GGNID KG  YWACK SGK CPPGAR
Sbjct: 121 GGNIDAKGASYWACKDSGKDCPPGAR 145

[Close]
BLAST of CsaV3_4G010570 vs. NCBI nr
Match: XP_023531904.1 (polygalacturonase-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 218.4 bits (555), Expect = 1.7e-53
Identity = 106/146 (72.60%), Postives = 118/146 (80.82%), Query Frame = 0 

Query: 1   MANPTKSLVFVL-FFHLFIQISSAGNYNVITFGAKPDGKTDSTQSFLKAWMSACSSLTRS 60
           MAN  K+L+ ++  F+ FIQ+SSA  +NVIT+GAKPDGKTDST+ FLKAW SACSS T S
Sbjct: 1   MANTIKTLLLIISSFYFFIQLSSAATFNVITYGAKPDGKTDSTRPFLKAWTSACSSSTPS 60

Query: 61  TINVPKGRFLLTSITFRGPCKNSNITFQLNGTLVAPLDYNALGDSRYWILFTKVNGISFI 120
           TINVPKGRFLL   TFRGPCKN  ITF+LNGTLVAPLDY ALG S YWILF KVN +SF 
Sbjct: 61  TINVPKGRFLLNPTTFRGPCKN-KITFRLNGTLVAPLDYRALGSSGYWILFIKVNDVSFF 120

Query: 121 GGNIDGKGTDYWACKGSGKKCPPGAR 146
           GGNID KG  YWAC+ SGK CPPGAR
Sbjct: 121 GGNIDAKGASYWACRDSGKDCPPGAR 145

[Close]
BLAST of CsaV3_4G010570 vs. TAIR10
Match: AT2G43890.1 (Pectin lyase-like superfamily protein)

HSP 1 Score: 167.2 bits (422), Expect = 8.2e-42
Identity = 75/121 (61.98%), Postives = 92/121 (76.03%), Query Frame = 0 

Query: 25  NYNVITFGAKPDGKTDSTQSFLKAWMSACSSLTRSTINVPKGRFLLTSITFRGPCKNSNI 84
           NYNV++FGAKPDG+TDST++FL AW +AC S    T+ VP+G FLL  + FRGPC+ S I
Sbjct: 28  NYNVVSFGAKPDGRTDSTKAFLGAWQAACRSAAAVTVTVPRGSFLLKPVEFRGPCR-SRI 87

Query: 85  TFQLNGTLVAPLDYNALGDSRYWILFTKVNGISFIGGNIDGKGTDYWACKGSGKKCPPGA 144
           TFQ+ GT+VAP DY  LG+S YWILF KVN IS IGG +D +G  +WAC+ SGK CP GA
Sbjct: 88  TFQIYGTIVAPSDYRGLGNSGYWILFVKVNRISIIGGTLDARGASFWACRKSGKSCPVGA 147

Query: 145 R 146
           R
Sbjct: 148 R 147

[Close]
BLAST of CsaV3_4G010570 vs. TAIR10
Match: AT1G05660.1 (Pectin lyase-like superfamily protein)

HSP 1 Score: 162.5 bits (410), Expect = 2.0e-40
Identity = 75/139 (53.96%), Postives = 98/139 (70.50%), Query Frame = 0 

Query: 7   SLVFVLFFHLFIQISSAGNYNVITFGAKPDGKTDSTQSFLKAWMSACSSLTRSTINVPKG 66
           SL+F L   + + IS++  +NV++FGAKPDG TDST +FLKAW  AC S + +T+ VPKG
Sbjct: 9   SLLFTLLTFIDVSISASNVFNVVSFGAKPDGVTDSTGAFLKAWQGACVSASSATVVVPKG 68

Query: 67  RFLLTSITFRGPCKNSNITFQLNGTLVAPLDYNALGDSRYWILFTKVNGISFIGGNIDGK 126
            FLL  ITF GPCK S ITFQ+ GT++AP DY   G+S +WILF KVN  S +GG  D +
Sbjct: 69  TFLLKVITFGGPCK-SKITFQVAGTVIAPEDYRTFGNSGFWILFNKVNRFSLVGGTFDAR 128

Query: 127 GTDYWACKGSGKKCPPGAR 146
              +W+C+ SG+ CPPG R
Sbjct: 129 ANGFWSCRKSGQNCPPGVR 146

[Close]
BLAST of CsaV3_4G010570 vs. TAIR10
Match: AT1G05650.1 (Pectin lyase-like superfamily protein)

HSP 1 Score: 160.2 bits (404), Expect = 1.0e-39
Identity = 81/146 (55.48%), Postives = 101/146 (69.18%), Query Frame = 0 

Query: 5   TKS-LVFVLFFHL--FIQISSAGN--YNVITFGAKPDGKTDSTQSFLKAWMSACSSLTRS 64
           TKS + F L F L  FI +SS+ +  +NV++FGAKPDG TDST +FLKAW  AC S   +
Sbjct: 2   TKSAITFPLIFTLLTFIDVSSSASIVFNVVSFGAKPDGVTDSTAAFLKAWQGACGSAASA 61

Query: 65  TINVPKGRFLLTSITFRGPCKNSNITFQLNGTLVAPLDYNALGDSRYWILFTKVNGISFI 124
           T+ VP G FLL  ITF GPCK S ITFQ+ GT+VAP DY   G+S  WILF KVN  S +
Sbjct: 62  TVVVPTGTFLLKVITFGGPCK-SKITFQVTGTVVAPEDYRTFGNSGSWILFNKVNRFSLV 121

Query: 125 GGNIDGKGTDYWACKGSGKKCPPGAR 146
           GG  D +G+ +W+C+ SG+ CPPG R
Sbjct: 122 GGTFDARGSGFWSCRKSGQNCPPGVR 146

[Close]
BLAST of CsaV3_4G010570 vs. TAIR10
Match: AT3G59850.1 (Pectin lyase-like superfamily protein)

HSP 1 Score: 158.7 bits (400), Expect = 2.9e-39
Identity = 76/139 (54.68%), Postives = 96/139 (69.06%), Query Frame = 0 

Query: 7   SLVFVLFFHLFIQISSAGNYNVITFGAKPDGKTDSTQSFLKAWMSACSSLTRSTINVPKG 66
           SL+ VL F L +  SSA  YN++++GAKPDGKTDST++F   W  AC+S+   TI VPKG
Sbjct: 4   SLLIVLLFLLSVSSSSAQTYNILSYGAKPDGKTDSTKAFTVLWAKACASVKPVTILVPKG 63

Query: 67  RFLLTSITFRG-PCKNSNITFQLNGTLVAPLDYNALGDSRYWILFTKVNGISFIGGNIDG 126
           RFLL SI F G  CK  ++TF++ GTLVAP DY  +G   YWILF  ++GIS  GG +D 
Sbjct: 64  RFLLRSIIFDGSKCKRKSVTFRIQGTLVAPSDYRVIGKENYWILFQHLDGISVYGGVLDA 123

Query: 127 KGTDYWACKGSGKKCPPGA 145
           +G   W+CK SGK CP GA
Sbjct: 124 QGASLWSCKKSGKNCPSGA 142

[Close]
BLAST of CsaV3_4G010570 vs. TAIR10
Match: AT2G43870.1 (Pectin lyase-like superfamily protein)

HSP 1 Score: 155.6 bits (392), Expect = 2.5e-38
Identity = 73/137 (53.28%), Postives = 95/137 (69.34%), Query Frame = 0 

Query: 9   VFVLFFHLFIQISSAGNYNVITFGAKPDGKTDSTQSFLKAWMSACSSLTRSTINVPKGRF 68
           + VLF   FI   SA +YNV++FGAKPDGKTD+T++F+  W +AC+S    TI VPKGRF
Sbjct: 4   LLVLFVFFFISSCSAQSYNVLSFGAKPDGKTDATKAFMAVWQTACASSRPVTIVVPKGRF 63

Query: 69  LLTSITFRG-PCKNSNITFQLNGTLVAPLDYNALGDSRYWILFTKVNGISFIGGNIDGKG 128
           LL S+TF G  CK   +TF+++GTLVAP DY  +G+  YWI F  ++GI+  GG +D +G
Sbjct: 64  LLRSVTFDGSKCKPKPVTFRIDGTLVAPADYRVIGNEDYWIFFQHLDGITVYGGVLDARG 123

Query: 129 TDYWACKGSGKKCPPGA 145
              W CK SGK CP GA
Sbjct: 124 ASLWDCKKSGKNCPSGA 140

[Close]
BLAST of CsaV3_4G010570 vs. Swiss-Prot
Match: sp|P48979|PGLR_PRUPE (Polygalacturonase OS=Prunus persica OX=3760 PE=2 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 3.5e-34
Identity = 70/139 (50.36%), Postives = 90/139 (64.75%), Query Frame = 0 

Query: 7   SLVFVLFFHLFIQISSAGNYNVITFGAKPDGKTDSTQSFLKAWMSACSSLTRSTINVPKG 66
           SL  +  F +   I+S   YNV + GAK DGKTDST++FL AW  AC+S+    I VP G
Sbjct: 9   SLSLIFVFMINSAIASPLTYNVASLGAKADGKTDSTKAFLSAWAKACASMNPGVIYVPAG 68

Query: 67  RFLLTSITFRGPCKNSNITFQLNGTLVAPLDYNALGDSRYWILFTKVNGISFIGGNIDGK 126
            F L  + F GPCKN+ ITF++ GTLVAP DY  +G++  WI F  VNG++  GG +DG+
Sbjct: 69  TFFLRDVVFSGPCKNNAITFRIAGTLVAPSDYRVIGNAANWIFFHHVNGVTISGGILDGQ 128

Query: 127 GTDYWACKG-SGKKCPPGA 145
           GT  WACK   G+ CP GA
Sbjct: 129 GTALWACKACHGESCPSGA 147

[Close]
BLAST of CsaV3_4G010570 vs. Swiss-Prot
Match: sp|O22818|PGLR6_ARATH (Probable polygalacturonase At2g43860 OS=Arabidopsis thaliana OX=3702 GN=At2g43860 PE=2 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.2e-26
Identity = 56/121 (46.28%), Postives = 81/121 (66.94%), Query Frame = 0 

Query: 27  NVITFGAKPDGKTDSTQSFLKAWMSACSSLTRSTINVPKGRFLLTSITFRG-PCKNSNIT 86
           NV+++GAKPDG  DST++FL AW  AC+S   +TI VPKGRFL+ ++ F G  CK + I+
Sbjct: 34  NVLSYGAKPDGSKDSTKAFLAAWDVACASANPTTIIVPKGRFLVGNLVFHGNECKQAPIS 93

Query: 87  FQLNGTLVAPLDYNALGDSRYWILFTKVNGISFIGGNIDGKGTDYWACKGS-GKKCPPGA 146
            ++ G++VAP D+  +  S++WI F  V  +S  GG +D +GT  W CK + G  CP GA
Sbjct: 94  IRIAGSIVAPEDFRIIASSKHWIWFEDVTDVSIYGGILDAQGTSLWKCKNNGGHNCPTGA 153

[Close]
BLAST of CsaV3_4G010570 vs. Swiss-Prot
Match: sp|Q9LW07|PGLR3_ARATH (Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana OX=3702 GN=At3g15720 PE=3 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.4e-19
Identity = 56/134 (41.79%), Postives = 77/134 (57.46%), Query Frame = 0 

Query: 6   KSLVFVLFFHLFIQISSAGN-YNVITFGAKPDGKTDSTQSFLKAWMSACSSLTRSTINVP 65
           K   F+ F   F+QI ++ N  +V  FGA  DG TD +Q+FLKAW + CS        VP
Sbjct: 3   KKTWFLNFSLFFLQIFTSSNALDVTQFGAVGDGVTDDSQAFLKAWEAVCSGTGDGQFVVP 62

Query: 66  KG-RFLLTSITFRGPCKNSNITFQLNGTLVAPLDYNALGDSRYWILFTKVNGISFIG-GN 125
            G  F+L  + F+G CK++ +  Q+ G LVAP   N  GD   WILFT + G+   G G 
Sbjct: 63  AGMTFMLQPLKFQGSCKSTPVFVQMLGKLVAPSKGNWKGDKDQWILFTDIEGLVIEGDGE 122

Query: 126 IDGKGTDYWACKGS 137
           I+G+G+ +W  KGS
Sbjct: 123 INGQGSSWWEHKGS 136

[Close]
BLAST of CsaV3_4G010570 vs. Swiss-Prot
Match: sp|O23147|ADPG1_ARATH (Polygalacturonase ADPG1 OS=Arabidopsis thaliana OX=3702 GN=ADPG1 PE=2 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.2e-18
Identity = 53/118 (44.92%), Postives = 70/118 (59.32%), Query Frame = 0 

Query: 23  AGNYNVITFGAKPDGKTDSTQSFLKAWMSACSSLTRSTINVPKGR-FLLTSITFRGPCKN 82
           A   +V  FGAK DGKTD TQ+F KAW  ACS+   +T  VPKG+ +LL S  FRGPCK+
Sbjct: 65  ASTVSVSNFGAKGDGKTDDTQAFKKAWKKACSTNGVTTFLVPKGKTYLLKSTRFRGPCKS 124

Query: 83  SNITFQLNGTLVAPLDYNALGDSRYWILFTKVNGISFIGGN---IDGKGTDYW--ACK 135
               FQ+ GTL A    +   D  +W++   VN +S  GG+   I+G G  +W  +CK
Sbjct: 125 LR-NFQILGTLSASTKRSDYKDKNHWLILEDVNNLSIDGGSTGIINGNGKTWWQNSCK 181

[Close]
BLAST of CsaV3_4G010570 vs. Swiss-Prot
Match: sp|P26216|PGLR1_MAIZE (Exopolygalacturonase OS=Zea mays OX=4577 GN=PG1 PE=1 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 6.1e-18
Identity = 45/117 (38.46%), Postives = 69/117 (58.97%), Query Frame = 0 

Query: 24  GNYNVITFGAKPDGKTDSTQSFLKAWMSACSSLTRSTINVPKGRFLLTSITFRGPCKNSN 83
           G++++   GA  +GKTDST++  +AW SAC    + TI +PKG FL+  + F GPCK  +
Sbjct: 39  GSFDITKLGASGNGKTDSTKAVQEAWASACGGTGKQTILIPKGDFLVGQLNFTGPCK-GD 98

Query: 84  ITFQLNGTLVAPLDYNALGDSRYWILFTKVNGISFIG-GNIDGKGTDYWACKGSGKK 140
           +T Q++G L+A  D +   D   WI   +V+ +   G GN+DG+G   W+     KK
Sbjct: 99  VTIQVDGNLLATTDLSQYKDHGNWIEILRVDNLVITGKGNLDGQGPAVWSKNSCTKK 154

[Close]
BLAST of CsaV3_4G010570 vs. TrEMBL
Match: tr|A0A0A0KZM5|A0A0A0KZM5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G153300 PE=3 SV=1)

HSP 1 Score: 303.9 bits (777), Expect = 2.1e-79
Identity = 146/150 (97.33%), Postives = 147/150 (98.00%), Query Frame = 0 

Query: 1   MANPTKSLVFVLFFHLFIQISSAGNYNVITFGAKPDGKTDSTQSFLKAWMSACSSLTRST 60
           MANPTKSLVFVLFFHLFIQISSAGNYNVITFGAKPDGKTDSTQSFLKAWMSACSSLTRST
Sbjct: 1   MANPTKSLVFVLFFHLFIQISSAGNYNVITFGAKPDGKTDSTQSFLKAWMSACSSLTRST 60

Query: 61  INVPKGRFLLTSITFRGPCKNSNITFQLNGTLVAPLDYNALGDSRYWILFTKVNGISFIG 120
           INVPKGRFLLTSITFRGPCKNSNITFQLNGTLVAPLDYNALGDSRYWILFTKVNGISFIG
Sbjct: 61  INVPKGRFLLTSITFRGPCKNSNITFQLNGTLVAPLDYNALGDSRYWILFTKVNGISFIG 120

Query: 121 GNIDGKGTDYWACKGSGKKCPPGARYREPR 151
           GNIDGKGTDYWACKGSGKKCPPGAR  E +
Sbjct: 121 GNIDGKGTDYWACKGSGKKCPPGARKAEKK 150

[Close]
BLAST of CsaV3_4G010570 vs. TrEMBL
Match: tr|A0A1S3CD98|A0A1S3CD98_CUCME (polygalacturonase-like OS=Cucumis melo OX=3656 GN=LOC103499553 PE=3 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 1.2e-71
Identity = 132/145 (91.03%), Postives = 138/145 (95.17%), Query Frame = 0 

Query: 1   MANPTKSLVFVLFFHLFIQISSAGNYNVITFGAKPDGKTDSTQSFLKAWMSACSSLTRST 60
           MAN  KSLVF++FFHLFIQISSAG+YNVITFGAKPDGKTDSTQSFLKAW SACSSLTRST
Sbjct: 1   MANSRKSLVFIVFFHLFIQISSAGSYNVITFGAKPDGKTDSTQSFLKAWKSACSSLTRST 60

Query: 61  INVPKGRFLLTSITFRGPCKNSNITFQLNGTLVAPLDYNALGDSRYWILFTKVNGISFIG 120
           INVPKGRFLLT+ITFRGPCKN+NI F LNGTLVAPLDYNALGDS YWILFTKVNG+SFIG
Sbjct: 61  INVPKGRFLLTAITFRGPCKNNNIIFLLNGTLVAPLDYNALGDSGYWILFTKVNGVSFIG 120

Query: 121 GNIDGKGTDYWACKGSGKKCPPGAR 146
           GNIDGKGT YWACKGSGKKCPPGAR
Sbjct: 121 GNIDGKGTAYWACKGSGKKCPPGAR 145

[Close]
BLAST of CsaV3_4G010570 vs. TrEMBL
Match: tr|A0A0A0M0F3|A0A0A0M0F3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G689640 PE=3 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 3.8e-65
Identity = 123/145 (84.83%), Postives = 130/145 (89.66%), Query Frame = 0 

Query: 1   MANPTKSLVFVLFFHLFIQISSAGNYNVITFGAKPDGKTDSTQSFLKAWMSACSSLTRST 60
           MANPTKSLVF++FFHLFIQIS+A NYNVI+FGAKPDGKTDSTQSFLKAW SACSS TRST
Sbjct: 1   MANPTKSLVFIVFFHLFIQISTAANYNVISFGAKPDGKTDSTQSFLKAWTSACSSSTRST 60

Query: 61  INVPKGRFLLTSITFRGPCKNSNITFQLNGTLVAPLDYNALGDSRYWILFTKVNGISFIG 120
           INVPKGRFLLT ITFRGPCKN  ITF LNGTLVAPLDY ALGDS YWILF KV+G+SF+G
Sbjct: 61  INVPKGRFLLTPITFRGPCKN-KITFLLNGTLVAPLDYRALGDSGYWILFIKVDGVSFVG 120

Query: 121 GNIDGKGTDYWACKGSGKKCPPGAR 146
           G IDGKGT YWACK S K CPPGAR
Sbjct: 121 GTIDGKGTAYWACKNSAKNCPPGAR 144

[Close]
BLAST of CsaV3_4G010570 vs. TrEMBL
Match: tr|A0A2I4E0K1|A0A2I4E0K1_9ROSI (polygalacturonase-like OS=Juglans regia OX=51240 GN=LOC108985195 PE=3 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 6.2e-44
Identity = 87/137 (63.50%), Postives = 107/137 (78.10%), Query Frame = 0 

Query: 9   VFVLFFHLFIQISSAGNYNVITFGAKPDGKTDSTQSFLKAWMSACSSLTRSTINVPKGRF 68
           +F +   + IQ+S+A NYNV+ FGAKPDGKT++T++FLKAW SAC+S T STI +PKGRF
Sbjct: 13  LFFMISFICIQVSNAANYNVVRFGAKPDGKTEATKAFLKAWESACNSATASTIYIPKGRF 72

Query: 69  LLTSITFRGPCKNSNITFQLNGTLVAPLDYNALGDSRYWILFTKVNGISFIGGNIDGKGT 128
           LL +  FRGPCKN  IT Q++GTLVAPLDY ALG+S YWILF +VN IS  GG +D KG 
Sbjct: 73  LLKATVFRGPCKN-RITVQIDGTLVAPLDYRALGNSGYWILFIEVNRISVFGGKLDAKGA 132

Query: 129 DYWACKGSGKKCPPGAR 146
            +WAC+ SGK CP GAR
Sbjct: 133 GFWACRRSGKNCPVGAR 148

[Close]
BLAST of CsaV3_4G010570 vs. TrEMBL
Match: tr|A0A2I4HP82|A0A2I4HP82_9ROSI (polygalacturonase-like OS=Juglans regia OX=51240 GN=LOC109020033 PE=3 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 8.1e-44
Identity = 87/137 (63.50%), Postives = 106/137 (77.37%), Query Frame = 0 

Query: 9   VFVLFFHLFIQISSAGNYNVITFGAKPDGKTDSTQSFLKAWMSACSSLTRSTINVPKGRF 68
           +F +   + IQ+S A NYNV+ FGAKPDGKT++T++FLKAW SAC+S T STI +PKGRF
Sbjct: 13  LFFMISFICIQVSKAANYNVVRFGAKPDGKTEATKAFLKAWESACNSATASTIYIPKGRF 72

Query: 69  LLTSITFRGPCKNSNITFQLNGTLVAPLDYNALGDSRYWILFTKVNGISFIGGNIDGKGT 128
           LL +  FRGPCKN  IT Q++GTLVAPLDY ALG+S YWILF +VN IS  GG +D KG 
Sbjct: 73  LLKATVFRGPCKN-RITVQIDGTLVAPLDYRALGNSGYWILFIEVNRISVFGGKLDAKGA 132

Query: 129 DYWACKGSGKKCPPGAR 146
            +WAC+ SGK CP GAR
Sbjct: 133 GFWACRRSGKNCPVGAR 148

The following BLAST results are available for this feature:
BLAST of CsaV3_4G010570 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN53827.13.1e-7997.33hypothetical protein Csa_4G153300 [Cucumis sativus][more]
XP_008460791.11.8e-7191.03PREDICTED: polygalacturonase-like [Cucumis melo][more]
XP_004142576.25.7e-6584.83PREDICTED: polygalacturonase-like [Cucumis sativus] >KGN66774.1 hypothetical pro... [more]
XP_022989666.15.9e-5473.29polygalacturonase-like [Cucurbita maxima][more]
XP_023531904.11.7e-5372.60polygalacturonase-like [Cucurbita pepo subsp. pepo][more]
BLAST of CsaV3_4G010570 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G43890.18.2e-4261.98Pectin lyase-like superfamily protein[more]
AT1G05660.12.0e-4053.96Pectin lyase-like superfamily protein[more]
AT1G05650.11.0e-3955.48Pectin lyase-like superfamily protein[more]
AT3G59850.12.9e-3954.68Pectin lyase-like superfamily protein[more]
AT2G43870.12.5e-3853.28Pectin lyase-like superfamily protein[more]
BLAST of CsaV3_4G010570 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|P48979|PGLR_PRUPE3.5e-3450.36Polygalacturonase OS=Prunus persica OX=3760 PE=2 SV=1[more]
sp|O22818|PGLR6_ARATH1.2e-2646.28Probable polygalacturonase At2g43860 OS=Arabidopsis thaliana OX=3702 GN=At2g4386... [more]
sp|Q9LW07|PGLR3_ARATH1.4e-1941.79Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana OX=3702 GN=At3g1572... [more]
sp|O23147|ADPG1_ARATH1.2e-1844.92Polygalacturonase ADPG1 OS=Arabidopsis thaliana OX=3702 GN=ADPG1 PE=2 SV=1[more]
sp|P26216|PGLR1_MAIZE6.1e-1838.46Exopolygalacturonase OS=Zea mays OX=4577 GN=PG1 PE=1 SV=1[more]
BLAST of CsaV3_4G010570 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KZM5|A0A0A0KZM5_CUCSA2.1e-7997.33Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G153300 PE=3 SV=1[more]
tr|A0A1S3CD98|A0A1S3CD98_CUCME1.2e-7191.03polygalacturonase-like OS=Cucumis melo OX=3656 GN=LOC103499553 PE=3 SV=1[more]
tr|A0A0A0M0F3|A0A0A0M0F3_CUCSA3.8e-6584.83Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G689640 PE=3 SV=1[more]
tr|A0A2I4E0K1|A0A2I4E0K1_9ROSI6.2e-4463.50polygalacturonase-like OS=Juglans regia OX=51240 GN=LOC108985195 PE=3 SV=1[more]
tr|A0A2I4HP82|A0A2I4HP82_9ROSI8.1e-4463.50polygalacturonase-like OS=Juglans regia OX=51240 GN=LOC109020033 PE=3 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0004650polygalacturonase activity
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR011050Pectin_lyase_fold/virulence
IPR000743Glyco_hydro_28
IPR012334Pectin_lyas_fold
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0005982 starch metabolic process
biological_process GO:0005985 sucrose metabolic process
biological_process GO:0071555 cell wall organization
biological_process GO:0005975 carbohydrate metabolic process
cellular_component GO:0005575 cellular_component
cellular_component GO:0005576 extracellular region
molecular_function GO:0004650 polygalacturonase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G010570.1CsaV3_4G010570.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012334Pectin lyase foldGENE3DG3DSA:2.160.20.10coord: 17..150
e-value: 3.5E-27
score: 97.3
IPR000743Glycoside hydrolase, family 28PFAMPF00295Glyco_hydro_28coord: 53..138
e-value: 9.7E-13
score: 47.8
NoneNo IPR availablePANTHERPTHR31375FAMILY NOT NAMEDcoord: 6..143
NoneNo IPR availablePANTHERPTHR31375:SF31F3F20.10 PROTEIN-RELATEDcoord: 6..143
IPR011050Pectin lyase fold/virulence factorSUPERFAMILYSSF51126Pectin lyase-likecoord: 8..132

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_4G010570CSPI04G10420Wild cucumber (PI 183967)cpicucB213
CsaV3_4G010570Cucsa.038070Cucumber (Gy14) v1cgycucB014
CsaV3_4G010570CsGy4G010110Cucumber (Gy14) v2cgybcucB171
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_4G010570Silver-seed gourdcarcucB0220
CsaV3_4G010570Cucurbita maxima (Rimu)cmacucB0801
CsaV3_4G010570Cucurbita moschata (Rifu)cmocucB0786
CsaV3_4G010570Cucurbita pepo (Zucchini)cpecucB0079
CsaV3_4G010570Bottle gourd (USVL1VR-Ls)cuclsiB281
CsaV3_4G010570Melon (DHL92) v3.5.1cucmeB338
CsaV3_4G010570Melon (DHL92) v3.6.1cucmedB322
CsaV3_4G010570Watermelon (Charleston Gray)cucwcgB322
CsaV3_4G010570Watermelon (97103) v2cucwmbB311
CsaV3_4G010570Wax gourdcucwgoB399