CsaV3_4G008990 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_4G008990
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr4 : 6511246 .. 6511674 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATAGATTCTCTCTCTACTTCCAAGTGCTCTGGATTTTCTACTGGAGCCACCAACTATCAACCAGAGCAAAGTTCAAGATCTTAAGAAAGATCTTGCGTGTCAAGTGGTGGGATAACGACTTAGTGAATGAAGAGAAAATAGCAAAGTGGTTCAAGACAAACACTCATCTTTCTCAAGAAGAAGAAGATCAATTCCTTCTTAGGAAAAATTCAATCATGACCTTCATCGCTGGAGCAAAATCTGAAGCAGATCTTCAAACGGTCATGGAAACAGTCATCCACACCATTTATGATGACGACAAAGAAAATGATGTTGAAGATACCAGAATTTCTTCAAACTCATTTGCTAATGATATTGATTTTGATAATGATCCGTATTACAATTTCGATATTAGCGATCCCTATTTCGATTCCCTGTTAGAATGA

mRNA sequence

ATGTATAGATTCTCTCTCTACTTCCAAGTGCTCTGGATTTTCTACTGGAGCCACCAACTATCAACCAGAGCAAAGTTCAAGATCTTAAGAAAGATCTTGCGTGTCAAGTGGTGGGATAACGACTTAGTGAATGAAGAGAAAATAGCAAAGTGGTTCAAGACAAACACTCATCTTTCTCAAGAAGAAGAAGATCAATTCCTTCTTAGGAAAAATTCAATCATGACCTTCATCGCTGGAGCAAAATCTGAAGCAGATCTTCAAACGGTCATGGAAACAGTCATCCACACCATTTATGATGACGACAAAGAAAATGATGTTGAAGATACCAGAATTTCTTCAAACTCATTTGCTAATGATATTGATTTTGATAATGATCCGTATTACAATTTCGATATTAGCGATCCCTATTTCGATTCCCTGTTAGAATGA

Coding sequence (CDS)

ATGTATAGATTCTCTCTCTACTTCCAAGTGCTCTGGATTTTCTACTGGAGCCACCAACTATCAACCAGAGCAAAGTTCAAGATCTTAAGAAAGATCTTGCGTGTCAAGTGGTGGGATAACGACTTAGTGAATGAAGAGAAAATAGCAAAGTGGTTCAAGACAAACACTCATCTTTCTCAAGAAGAAGAAGATCAATTCCTTCTTAGGAAAAATTCAATCATGACCTTCATCGCTGGAGCAAAATCTGAAGCAGATCTTCAAACGGTCATGGAAACAGTCATCCACACCATTTATGATGACGACAAAGAAAATGATGTTGAAGATACCAGAATTTCTTCAAACTCATTTGCTAATGATATTGATTTTGATAATGATCCGTATTACAATTTCGATATTAGCGATCCCTATTTCGATTCCCTGTTAGAATGA

Protein sequence

MYRFSLYFQVLWIFYWSHQLSTRAKFKILRKILRVKWWDNDLVNEEKIAKWFKTNTHLSQEEEDQFLLRKNSIMTFIAGAKSEADLQTVMETVIHTIYDDDKENDVEDTRISSNSFANDIDFDNDPYYNFDISDPYFDSLLE

Homology

[Close]

BLAST of CsaV3_4G008990 vs. NCBI nr
Match: KGN53659.1 (hypothetical protein Csa_4G097660 [Cucumis sativus])

HSP 1 Score: 285.4 bits (729), Expect = 1.1e-73
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1   MYRFSLYFQVLWIFYWSHQLSTRAKFKILRKILRVKWWDNDLVNEEKIAKWFKTNTHLSQ 60
           MYRFSLYFQVLWIFYWSHQLSTRAKFKILRKILRVKWWDNDLVNEEKIAKWFKTNTHLSQ
Sbjct: 1   MYRFSLYFQVLWIFYWSHQLSTRAKFKILRKILRVKWWDNDLVNEEKIAKWFKTNTHLSQ 60

Query: 61  EEEDQFLLRKNSIMTFIAGAKSEADLQTVMETVIHTIYDDDKENDVEDTRISSNSFANDI 120
           EEEDQFLLRKNSIMTFIAGAKSEADLQTVMETVIHTIYDDDKENDVEDTRISSNSFANDI
Sbjct: 61  EEEDQFLLRKNSIMTFIAGAKSEADLQTVMETVIHTIYDDDKENDVEDTRISSNSFANDI 120

Query: 121 DFDNDPYYNFDISDPYFDSLLE 143
           DFDNDPYYNFDISDPYFDSLLE
Sbjct: 121 DFDNDPYYNFDISDPYFDSLLE 142

[Close]

BLAST of CsaV3_4G008990 vs. TrEMBL
Match: tr|A0A0A0KXT5|A0A0A0KXT5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G097660 PE=4 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 7.0e-74
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1   MYRFSLYFQVLWIFYWSHQLSTRAKFKILRKILRVKWWDNDLVNEEKIAKWFKTNTHLSQ 60
           MYRFSLYFQVLWIFYWSHQLSTRAKFKILRKILRVKWWDNDLVNEEKIAKWFKTNTHLSQ
Sbjct: 1   MYRFSLYFQVLWIFYWSHQLSTRAKFKILRKILRVKWWDNDLVNEEKIAKWFKTNTHLSQ 60

Query: 61  EEEDQFLLRKNSIMTFIAGAKSEADLQTVMETVIHTIYDDDKENDVEDTRISSNSFANDI 120
           EEEDQFLLRKNSIMTFIAGAKSEADLQTVMETVIHTIYDDDKENDVEDTRISSNSFANDI
Sbjct: 61  EEEDQFLLRKNSIMTFIAGAKSEADLQTVMETVIHTIYDDDKENDVEDTRISSNSFANDI 120

Query: 121 DFDNDPYYNFDISDPYFDSLLE 143
           DFDNDPYYNFDISDPYFDSLLE
Sbjct: 121 DFDNDPYYNFDISDPYFDSLLE 142

The following BLAST results are available for this feature:

BLAST of CsaV3_4G008990 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN53659.1	1.1e-73	100.00	hypothetical protein Csa_4G097660 [Cucumis sativus]	[more]

BLAST of CsaV3_4G008990 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_4G008990 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_4G008990 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KXT5\|A0A0A0KXT5_CUCSA	7.0e-74	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G097660 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G008990.1	CsaV3_4G008990.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_4G008990	CSPI04G08790	Wild cucumber (PI 183967)	cpicucB213
CsaV3_4G008990	CsGy4G008600	Cucumber (Gy14) v2	cgybcucB171

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_4G008990	Silver-seed gourd	carcucB0981
CsaV3_4G008990	Silver-seed gourd	carcucB1062
CsaV3_4G008990	Cucumber (Gy14) v1	cgycucB604
CsaV3_4G008990	Cucurbita maxima (Rimu)	cmacucB0390
CsaV3_4G008990	Cucurbita maxima (Rimu)	cmacucB0845
CsaV3_4G008990	Cucurbita moschata (Rifu)	cmocucB0386
CsaV3_4G008990	Cucurbita moschata (Rifu)	cmocucB0831
CsaV3_4G008990	Cucurbita pepo (Zucchini)	cpecucB0264
CsaV3_4G008990	Cucurbita pepo (Zucchini)	cpecucB0501
CsaV3_4G008990	Melon (DHL92) v3.5.1	cucmeB304
CsaV3_4G008990	Melon (DHL92) v3.5.1	cucmeB326
CsaV3_4G008990	Melon (DHL92) v3.6.1	cucmedB296
CsaV3_4G008990	Melon (DHL92) v3.6.1	cucmedB319
CsaV3_4G008990	Watermelon (Charleston Gray)	cucwcgB284
CsaV3_4G008990	Watermelon (97103) v1	cucwmB303
CsaV3_4G008990	Watermelon (97103) v2	cucwmbB278
CsaV3_4G008990	Wax gourd	cucwgoB364