CSPI04G08790 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI04G08790
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr4 : 6539911 .. 6540339 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATAGATTCTCTCTCTACTTCCAAGTGCTCTGGATTTTCTACTGGAGCCACCAACTATCAACCAGAGCAAAGTTCAAGATCTTAAGAAAGATCTTGCATGTCAAGTGGTGGGATAACGACTTAGTGAATGAAGAGAAAATAGCAAAGTGGTTCAAGACAAACACTCATCTTTCTCAAGAAGAAGAAGATCAATTCCTTCTTGGGAAAAATTCAATCATGACCTTCATCGCTGGAGCAAAATCTGAAGCAGATCTTCAAACGGTCATGGAAACAGTCATCCACACCATTTATGATGACGACAAAAAAAATGATGTTGAAGATACCAGAATTTCTTCAAACTCATTTGCTAATGATATTGATTTTGATAATGATCCTTATTACAATTTCGATATTAGCGATCCCTATTTCGATTCCATGTTAGAATGA

mRNA sequence

ATGTATAGATTCTCTCTCTACTTCCAAGTGCTCTGGATTTTCTACTGGAGCCACCAACTATCAACCAGAGCAAAGTTCAAGATCTTAAGAAAGATCTTGCATGTCAAGTGGTGGGATAACGACTTAGTGAATGAAGAGAAAATAGCAAAGTGGTTCAAGACAAACACTCATCTTTCTCAAGAAGAAGAAGATCAATTCCTTCTTGGGAAAAATTCAATCATGACCTTCATCGCTGGAGCAAAATCTGAAGCAGATCTTCAAACGGTCATGGAAACAGTCATCCACACCATTTATGATGACGACAAAAAAAATGATGTTGAAGATACCAGAATTTCTTCAAACTCATTTGCTAATGATATTGATTTTGATAATGATCCTTATTACAATTTCGATATTAGCGATCCCTATTTCGATTCCATGTTAGAATGA

Coding sequence (CDS)

ATGTATAGATTCTCTCTCTACTTCCAAGTGCTCTGGATTTTCTACTGGAGCCACCAACTATCAACCAGAGCAAAGTTCAAGATCTTAAGAAAGATCTTGCATGTCAAGTGGTGGGATAACGACTTAGTGAATGAAGAGAAAATAGCAAAGTGGTTCAAGACAAACACTCATCTTTCTCAAGAAGAAGAAGATCAATTCCTTCTTGGGAAAAATTCAATCATGACCTTCATCGCTGGAGCAAAATCTGAAGCAGATCTTCAAACGGTCATGGAAACAGTCATCCACACCATTTATGATGACGACAAAAAAAATGATGTTGAAGATACCAGAATTTCTTCAAACTCATTTGCTAATGATATTGATTTTGATAATGATCCTTATTACAATTTCGATATTAGCGATCCCTATTTCGATTCCATGTTAGAATGA

Homology

[Close]

BLAST of CSPI04G08790 vs. TrEMBL
Match: A0A0A0KXT5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G097660 PE=4 SV=1)

HSP 1 Score: 279.6 bits (714), Expect = 2.1e-72
Identity = 138/142 (97.18%), Postives = 140/142 (98.59%), Query Frame = 1


Query: 1   MYRFSLYFQVLWIFYWSHQLSTRAKFKILRKILHVKWWDNDLVNEEKIAKWFKTNTHLSQ 60
           MYRFSLYFQVLWIFYWSHQLSTRAKFKILRKIL VKWWDNDLVNEEKIAKWFKTNTHLSQ
Sbjct: 1   MYRFSLYFQVLWIFYWSHQLSTRAKFKILRKILRVKWWDNDLVNEEKIAKWFKTNTHLSQ 60

Query: 61  EEEDQFLLGKNSIMTFIAGAKSEADLQTVMETVIHTIYDDDKKNDVEDTRISSNSFANDI 120
           EEEDQFLL KNSIMTFIAGAKSEADLQTVMETVIHTIYDDDK+NDVEDTRISSNSFANDI
Sbjct: 61  EEEDQFLLRKNSIMTFIAGAKSEADLQTVMETVIHTIYDDDKENDVEDTRISSNSFANDI 120

Query: 121 DFDNDPYYNFDISDPYFDSMLE 143
           DFDNDPYYNFDISDPYFDS+LE
Sbjct: 121 DFDNDPYYNFDISDPYFDSLLE 142

[Close]

BLAST of CSPI04G08790 vs. NCBI nr
Match: gi|700198501|gb|KGN53659.1| (hypothetical protein Csa_4G097660 [Cucumis sativus])

HSP 1 Score: 279.6 bits (714), Expect = 3.0e-72
Identity = 138/142 (97.18%), Postives = 140/142 (98.59%), Query Frame = 1


Query: 1   MYRFSLYFQVLWIFYWSHQLSTRAKFKILRKILHVKWWDNDLVNEEKIAKWFKTNTHLSQ 60
           MYRFSLYFQVLWIFYWSHQLSTRAKFKILRKIL VKWWDNDLVNEEKIAKWFKTNTHLSQ
Sbjct: 1   MYRFSLYFQVLWIFYWSHQLSTRAKFKILRKILRVKWWDNDLVNEEKIAKWFKTNTHLSQ 60

Query: 61  EEEDQFLLGKNSIMTFIAGAKSEADLQTVMETVIHTIYDDDKKNDVEDTRISSNSFANDI 120
           EEEDQFLL KNSIMTFIAGAKSEADLQTVMETVIHTIYDDDK+NDVEDTRISSNSFANDI
Sbjct: 61  EEEDQFLLRKNSIMTFIAGAKSEADLQTVMETVIHTIYDDDKENDVEDTRISSNSFANDI 120

Query: 121 DFDNDPYYNFDISDPYFDSMLE 143
           DFDNDPYYNFDISDPYFDS+LE
Sbjct: 121 DFDNDPYYNFDISDPYFDSLLE 142

The following BLAST results are available for this feature:

BLAST of CSPI04G08790 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI04G08790 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KXT5_CUCSA	2.1e-72	97.18	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G097660 PE=4 SV=1	[more]

BLAST of CSPI04G08790 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI04G08790 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700198501\|gb\|KGN53659.1\|	3.0e-72	97.18	hypothetical protein Csa_4G097660 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G08790.1	CSPI04G08790.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI04G08790	Csa4G097660	Cucumber (Chinese Long) v2	cpicuB182
CSPI04G08790	CsaV3_4G008990	Cucumber (Chinese Long) v3	cpicucB213
CSPI04G08790	CsGy4G008600	Cucumber (Gy14) v2	cgybcpiB168

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI04G08790	Cucumber (Gy14) v1	cgycpiB585
CSPI04G08790	Cucurbita maxima (Rimu)	cmacpiB340
CSPI04G08790	Cucurbita maxima (Rimu)	cmacpiB717
CSPI04G08790	Cucurbita moschata (Rifu)	cmocpiB330
CSPI04G08790	Cucurbita moschata (Rifu)	cmocpiB711
CSPI04G08790	Melon (DHL92) v3.5.1	cpimeB298
CSPI04G08790	Melon (DHL92) v3.5.1	cpimeB320
CSPI04G08790	Watermelon (Charleston Gray)	cpiwcgB285
CSPI04G08790	Watermelon (97103) v1	cpiwmB295
CSPI04G08790	Cucurbita pepo (Zucchini)	cpecpiB222
CSPI04G08790	Cucurbita pepo (Zucchini)	cpecpiB401
CSPI04G08790	Melon (DHL92) v3.6.1	cpimedB292
CSPI04G08790	Melon (DHL92) v3.6.1	cpimedB312
CSPI04G08790	Silver-seed gourd	carcpiB0979
CSPI04G08790	Silver-seed gourd	carcpiB1056
CSPI04G08790	Watermelon (97103) v2	cpiwmbB283