CsaV3_4G008620 (gene) Cucumber (Chinese Long) v3

NameCsaV3_4G008620
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr4 : 6109842 .. 6110006 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGAATCCAAACAATAATCCTACCAACCAACAACAGGACCCAGATCAGAACCCTGCTTACCTTACCCATGATTTAGACCATCCCATCGGGTCATATGCATCACCAAGCTTGTACGATTTCAACCCAGGCATAACATCTCCTGTGTTTAGGAAAGATTCATGA

mRNA sequence

ATGAAGAATCCAAACAATAATCCTACCAACCAACAACAGGACCCAGATCAGAACCCTGCTTACCTTACCCATGATTTAGACCATCCCATCGGGTCATATGCATCACCAAGCTTGTACGATTTCAACCCAGGCATAACATCTCCTGTGTTTAGGAAAGATTCATGA

Coding sequence (CDS)

ATGAAGAATCCAAACAATAATCCTACCAACCAACAACAGGACCCAGATCAGAACCCTGCTTACCTTACCCATGATTTAGACCATCCCATCGGGTCATATGCATCACCAAGCTTGTACGATTTCAACCCAGGCATAACATCTCCTGTGTTTAGGAAAGATTCATGA

Protein sequence

MKNPNNNPTNQQQDPDQNPAYLTHDLDHPIGSYASPSLYDFNPGITSPVFRKDS
BLAST of CsaV3_4G008620 vs. NCBI nr
Match: KGN53623.1 (hypothetical protein Csa_4G091895 [Cucumis sativus])

HSP 1 Score: 117.1 bits (292), Expect = 1.9e-23
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 0

Query: 1  MKNPNNNPTNQQQDPDQNPAYLTHDLDHPIGSYASPSLYDFNPGITSPVFRKDS 55
          MKNPNNNPTNQQQDPDQNPAYLTHDLDHPIGSYASPSLYDFNPGITSPVFRKDS
Sbjct: 1  MKNPNNNPTNQQQDPDQNPAYLTHDLDHPIGSYASPSLYDFNPGITSPVFRKDS 54

BLAST of CsaV3_4G008620 vs. TrEMBL
Match: tr|A0A0A0KVN8|A0A0A0KVN8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G091895 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.3e-23
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 0

Query: 1  MKNPNNNPTNQQQDPDQNPAYLTHDLDHPIGSYASPSLYDFNPGITSPVFRKDS 55
          MKNPNNNPTNQQQDPDQNPAYLTHDLDHPIGSYASPSLYDFNPGITSPVFRKDS
Sbjct: 1  MKNPNNNPTNQQQDPDQNPAYLTHDLDHPIGSYASPSLYDFNPGITSPVFRKDS 54

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN53623.11.9e-23100.00hypothetical protein Csa_4G091895 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0KVN8|A0A0A0KVN8_CUCSA1.3e-23100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G091895 PE=4 SV=1[more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G008620.1CsaV3_4G008620.1mRNA


Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..54
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..19

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_4G008620CSPI04G08370Wild cucumber (PI 183967)cpicucB213
The following gene(s) are paralogous to this gene:

None