CsaV3_4G007710 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G007710
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr4 : 5327587 .. 5328201 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATAAGTTTGTTGACACAACTTGGTAAGTATACCTCCAGTTCTCGTATGTCTTCTGGTTTTGAAGCTGGTCACTGTGCTGATTATCCTGGTAGTTCTCAGTTTGTTTCGCCTCGTTTGAATTCTAGTTCATCTCAGTCTTCTCTTAAGGATGGTTCTAGAGTTCCTGTTACAGAAATGAGGTTTATTTAGATCATTAATATTAACTCCGAGTCTTTGGATCATGATAATGTTGCTTTATATGAGTTGTTGCGCAGTCTGCATCATTCCGCTGCTAGTTCTGCTATATCTTCTCATGTGAATAAAGTGCCTATACCCTCTAAAGGGCCTAGGGCTGGGGCTCCGTTTGCGGGAGATGATGTGATTGATGATTTGTTTCCTGATTCTCTACTTCAGTCACATGGATTGTTATTATCTTTCGATTTGGCAACTCAGTTGGTCCAATTGTTGTTTGAAGAATCACGTTCTTTGAGTGTTTCCATTCAAGACTTGCAAGGGGTAATCTCTAGTCTAACTAGTCGTCATGTTGCAGTTGATTCTGTGTTTCATGTTTTACATTCATTAATTGTTGATTCTCAAAAGCGACCTTCTGACTCTTCTAAACATGGTTCTTAG

mRNA sequence

ATGATAAGTTTGTTGACACAACTTGGTAAGTATACCTCCAGTTCTCGTATGTCTTCTGGTTTTGAAGCTGGTCACTGTGCTGATTATCCTGGTAGTTCTCAGTTTGTTTCGCCTCGTTTGAATTCTAGTTCATCTCAGTCTTCTCTTAAGGATGGTTCTAGAGTTCCTGTTACAGAAATGAGTCTGCATCATTCCGCTGCTAGTTCTGCTATATCTTCTCATGTGAATAAAGTGCCTATACCCTCTAAAGGGCCTAGGGCTGGGGCTCCGTTTGCGGGAGATGATGTGATTGATGATTTGTTTCCTGATTCTCTACTTCAGTCACATGGATTGTTATTATCTTTCGATTTGGCAACTCAGTTGGTCCAATTGTTGTTTGAAGAATCACGTTCTTTGAGTGTTTCCATTCAAGACTTGCAAGGGGTAATCTCTAGTCTAACTAGTCGTCATGTTGCAGTTGATTCTGTGTTTCATGTTTTACATTCATTAATTGTTGATTCTCAAAAGCGACCTTCTGACTCTTCTAAACATGGTTCTTAG

Coding sequence (CDS)

ATGATAAGTTTGTTGACACAACTTGGTAAGTATACCTCCAGTTCTCGTATGTCTTCTGGTTTTGAAGCTGGTCACTGTGCTGATTATCCTGGTAGTTCTCAGTTTGTTTCGCCTCGTTTGAATTCTAGTTCATCTCAGTCTTCTCTTAAGGATGGTTCTAGAGTTCCTGTTACAGAAATGAGTCTGCATCATTCCGCTGCTAGTTCTGCTATATCTTCTCATGTGAATAAAGTGCCTATACCCTCTAAAGGGCCTAGGGCTGGGGCTCCGTTTGCGGGAGATGATGTGATTGATGATTTGTTTCCTGATTCTCTACTTCAGTCACATGGATTGTTATTATCTTTCGATTTGGCAACTCAGTTGGTCCAATTGTTGTTTGAAGAATCACGTTCTTTGAGTGTTTCCATTCAAGACTTGCAAGGGGTAATCTCTAGTCTAACTAGTCGTCATGTTGCAGTTGATTCTGTGTTTCATGTTTTACATTCATTAATTGTTGATTCTCAAAAGCGACCTTCTGACTCTTCTAAACATGGTTCTTAG

Protein sequence

MISLLTQLGKYTSSSRMSSGFEAGHCADYPGSSQFVSPRLNSSSSQSSLKDGSRVPVTEMSLHHSAASSAISSHVNKVPIPSKGPRAGAPFAGDDVIDDLFPDSLLQSHGLLLSFDLATQLVQLLFEESRSLSVSIQDLQGVISSLTSRHVAVDSVFHVLHSLIVDSQKRPSDSSKHGS
Homology
[Close]
BLAST of CsaV3_4G007710 vs. NCBI nr
Match: KGN53530.1 (hypothetical protein Csa_4G064620 [Cucumis sativus])

HSP 1 Score: 337.4 bits (864), Expect = 2.9e-89
Identity = 179/179 (100.00%), Postives = 179/179 (100.00%), Query Frame = 0 

Query: 1   MISLLTQLGKYTSSSRMSSGFEAGHCADYPGSSQFVSPRLNSSSSQSSLKDGSRVPVTEM 60
           MISLLTQLGKYTSSSRMSSGFEAGHCADYPGSSQFVSPRLNSSSSQSSLKDGSRVPVTEM
Sbjct: 1   MISLLTQLGKYTSSSRMSSGFEAGHCADYPGSSQFVSPRLNSSSSQSSLKDGSRVPVTEM 60

Query: 61  SLHHSAASSAISSHVNKVPIPSKGPRAGAPFAGDDVIDDLFPDSLLQSHGLLLSFDLATQ 120
           SLHHSAASSAISSHVNKVPIPSKGPRAGAPFAGDDVIDDLFPDSLLQSHGLLLSFDLATQ
Sbjct: 61  SLHHSAASSAISSHVNKVPIPSKGPRAGAPFAGDDVIDDLFPDSLLQSHGLLLSFDLATQ 120

Query: 121 LVQLLFEESRSLSVSIQDLQGVISSLTSRHVAVDSVFHVLHSLIVDSQKRPSDSSKHGS 180
           LVQLLFEESRSLSVSIQDLQGVISSLTSRHVAVDSVFHVLHSLIVDSQKRPSDSSKHGS
Sbjct: 121 LVQLLFEESRSLSVSIQDLQGVISSLTSRHVAVDSVFHVLHSLIVDSQKRPSDSSKHGS 179

[Close]
BLAST of CsaV3_4G007710 vs. TrEMBL
Match: tr|A0A0A0KVC9|A0A0A0KVC9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G064620 PE=4 SV=1)

HSP 1 Score: 337.4 bits (864), Expect = 1.9e-89
Identity = 179/179 (100.00%), Postives = 179/179 (100.00%), Query Frame = 0 

Query: 1   MISLLTQLGKYTSSSRMSSGFEAGHCADYPGSSQFVSPRLNSSSSQSSLKDGSRVPVTEM 60
           MISLLTQLGKYTSSSRMSSGFEAGHCADYPGSSQFVSPRLNSSSSQSSLKDGSRVPVTEM
Sbjct: 1   MISLLTQLGKYTSSSRMSSGFEAGHCADYPGSSQFVSPRLNSSSSQSSLKDGSRVPVTEM 60

Query: 61  SLHHSAASSAISSHVNKVPIPSKGPRAGAPFAGDDVIDDLFPDSLLQSHGLLLSFDLATQ 120
           SLHHSAASSAISSHVNKVPIPSKGPRAGAPFAGDDVIDDLFPDSLLQSHGLLLSFDLATQ
Sbjct: 61  SLHHSAASSAISSHVNKVPIPSKGPRAGAPFAGDDVIDDLFPDSLLQSHGLLLSFDLATQ 120

Query: 121 LVQLLFEESRSLSVSIQDLQGVISSLTSRHVAVDSVFHVLHSLIVDSQKRPSDSSKHGS 180
           LVQLLFEESRSLSVSIQDLQGVISSLTSRHVAVDSVFHVLHSLIVDSQKRPSDSSKHGS
Sbjct: 121 LVQLLFEESRSLSVSIQDLQGVISSLTSRHVAVDSVFHVLHSLIVDSQKRPSDSSKHGS 179

The following BLAST results are available for this feature:
BLAST of CsaV3_4G007710 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN53530.12.9e-89100.00hypothetical protein Csa_4G064620 [Cucumis sativus][more]
BLAST of CsaV3_4G007710 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G007710 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G007710 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KVC9|A0A0A0KVC9_CUCSA1.9e-89100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G064620 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G007710.1CsaV3_4G007710.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_4G007710CSPI04G07500Wild cucumber (PI 183967)cpicucB213
CsaV3_4G007710CsGy4G007390Cucumber (Gy14) v2cgybcucB171
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_4G007710Wax gourdcucwgoB370
CsaV3_4G007710Wax gourdcucwgoB388
CsaV3_4G007710Silver-seed gourdcarcucB0052
CsaV3_4G007710Silver-seed gourdcarcucB0689
CsaV3_4G007710Cucumber (Gy14) v1cgycucB289
CsaV3_4G007710Cucurbita maxima (Rimu)cmacucB0393
CsaV3_4G007710Cucurbita maxima (Rimu)cmacucB0841
CsaV3_4G007710Cucurbita moschata (Rifu)cmocucB0388
CsaV3_4G007710Cucurbita moschata (Rifu)cmocucB0827
CsaV3_4G007710Cucurbita pepo (Zucchini)cpecucB0266
CsaV3_4G007710Cucurbita pepo (Zucchini)cpecucB0496
CsaV3_4G007710Bottle gourd (USVL1VR-Ls)cuclsiB323
CsaV3_4G007710Bottle gourd (USVL1VR-Ls)cuclsiB333
CsaV3_4G007710Melon (DHL92) v3.5.1cucmeB306
CsaV3_4G007710Melon (DHL92) v3.5.1cucmeB317
CsaV3_4G007710Melon (DHL92) v3.6.1cucmedB298
CsaV3_4G007710Melon (DHL92) v3.6.1cucmedB309
CsaV3_4G007710Watermelon (Charleston Gray)cucwcgB339
CsaV3_4G007710Watermelon (Charleston Gray)cucwcgB343
CsaV3_4G007710Watermelon (97103) v1cucwmB321
CsaV3_4G007710Watermelon (97103) v1cucwmB323
CsaV3_4G007710Watermelon (97103) v2cucwmbB327
CsaV3_4G007710Watermelon (97103) v2cucwmbB329