CsaV3_4G007090 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G007090
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr4 : 4806797 .. 4807154 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTGGGCGAATTGGATCCCGCCTTGCATCAACTGAATCGGAAACCGTGGTGAAGATTGCTTCGGTTCTTGCCTTCCTCCAGATCTCAGGTACGGAGTTGCTCTAACTTTCGAGAAAGAGCTAGTTAATCTAATTGTTGTGTTTTTTTATGATCGTTGTTGTAGATTTTCCTTGCTAGTTTAGATTTATCTACATGTACGACATCAATCAATCTGAAAACTGCTCAATCGATCTGCTCCTCTGTGTATCCGAATCTTGATTCTTGTTCTCCTCTGTCGAAGACAAAGGAGCATAAGCTTGATTCTCAGTTGAGTTTAATGATTTTGTGTTTCATAAAGCCAATTGATAGTCATTGA

mRNA sequence

ATGTGTGGGCGAATTGGATCCCGCCTTGCATCAACTGAATCGGAAACCGTGGTGAAGATTGCTTCGGTTCTTGCCTTCCTCCAGATCTCAGATTTATCTACATGTACGACATCAATCAATCTGAAAACTGCTCAATCGATCTGCTCCTCTGTGTATCCGAATCTTGATTCTTGTTCTCCTCTGTCGAAGACAAAGGAGCATAAGCTTGATTCTCAGTTGAGTTTAATGATTTTGTGTTTCATAAAGCCAATTGATAGTCATTGA

Coding sequence (CDS)

ATGTGTGGGCGAATTGGATCCCGCCTTGCATCAACTGAATCGGAAACCGTGGTGAAGATTGCTTCGGTTCTTGCCTTCCTCCAGATCTCAGATTTATCTACATGTACGACATCAATCAATCTGAAAACTGCTCAATCGATCTGCTCCTCTGTGTATCCGAATCTTGATTCTTGTTCTCCTCTGTCGAAGACAAAGGAGCATAAGCTTGATTCTCAGTTGAGTTTAATGATTTTGTGTTTCATAAAGCCAATTGATAGTCATTGA

Protein sequence

MCGRIGSRLASTESETVVKIASVLAFLQISDLSTCTTSINLKTAQSICSSVYPNLDSCSPLSKTKEHKLDSQLSLMILCFIKPIDSH
Homology
[Close]
BLAST of CsaV3_4G007090 vs. NCBI nr
Match: KGN53463.1 (hypothetical protein Csa_4G056540 [Cucumis sativus])

HSP 1 Score: 169.1 bits (427), Expect = 6.8e-39
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0 

Query: 1   MCGRIGSRLASTESETVVKIASVLAFLQISDLSTCTTSINLKTAQSICSSVYPNLDSCSP 60
           MCGRIGSRLASTESETVVKIASVLAFLQISDLSTCTTSINLKTAQSICSSVYPNLDSCSP
Sbjct: 81  MCGRIGSRLASTESETVVKIASVLAFLQISDLSTCTTSINLKTAQSICSSVYPNLDSCSP 140

Query: 61  LSKTKEHKLDSQLSLMILCFIKPIDSH 88
           LSKTKEHKLDSQLSLMILCFIKPIDSH
Sbjct: 141 LSKTKEHKLDSQLSLMILCFIKPIDSH 167

[Close]
BLAST of CsaV3_4G007090 vs. TrEMBL
Match: tr|A0A0A0KV90|A0A0A0KV90_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G056540 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 4.5e-39
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0 

Query: 1   MCGRIGSRLASTESETVVKIASVLAFLQISDLSTCTTSINLKTAQSICSSVYPNLDSCSP 60
           MCGRIGSRLASTESETVVKIASVLAFLQISDLSTCTTSINLKTAQSICSSVYPNLDSCSP
Sbjct: 81  MCGRIGSRLASTESETVVKIASVLAFLQISDLSTCTTSINLKTAQSICSSVYPNLDSCSP 140

Query: 61  LSKTKEHKLDSQLSLMILCFIKPIDSH 88
           LSKTKEHKLDSQLSLMILCFIKPIDSH
Sbjct: 141 LSKTKEHKLDSQLSLMILCFIKPIDSH 167

The following BLAST results are available for this feature:
BLAST of CsaV3_4G007090 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN53463.16.8e-39100.00hypothetical protein Csa_4G056540 [Cucumis sativus][more]
BLAST of CsaV3_4G007090 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G007090 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G007090 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KV90|A0A0A0KV90_CUCSA4.5e-39100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G056540 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G007090.1CsaV3_4G007090.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_4G007090CSPI04G06880Wild cucumber (PI 183967)cpicucB213
CsaV3_4G007090CsGy4G006820Cucumber (Gy14) v2cgybcucB171
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_4G007090Cucurbita maxima (Rimu)cmacucB0393
CsaV3_4G007090Cucurbita maxima (Rimu)cmacucB0841
CsaV3_4G007090Cucurbita moschata (Rifu)cmocucB0388
CsaV3_4G007090Cucurbita moschata (Rifu)cmocucB0827
CsaV3_4G007090Cucurbita pepo (Zucchini)cpecucB0266
CsaV3_4G007090Cucurbita pepo (Zucchini)cpecucB0496
CsaV3_4G007090Bottle gourd (USVL1VR-Ls)cuclsiB323
CsaV3_4G007090Melon (DHL92) v3.5.1cucmeB300
CsaV3_4G007090Melon (DHL92) v3.6.1cucmedB292
CsaV3_4G007090Watermelon (Charleston Gray)cucwcgB343
CsaV3_4G007090Watermelon (97103) v1cucwmB323
CsaV3_4G007090Watermelon (97103) v2cucwmbB329
CsaV3_4G007090Wax gourdcucwgoB370
CsaV3_4G007090Silver-seed gourdcarcucB0052
CsaV3_4G007090Silver-seed gourdcarcucB0689
CsaV3_4G007090Cucumber (Gy14) v1cgycucB345