CsGy4G006820 (gene) Cucumber (Gy14) v2

Overview
NameCsGy4G006820
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionUncharacterized protein
LocationChr4 : 4929299 .. 4929656 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTGGGCGAATTGGATCCCGCCTTGCATCAACTGAATCGGAAACCGTGGTGAAGATTGCTTCGGTTCTTGCCTTCCTCCAGATCTCAGGTACGGAGTTGCTCTAACTTTCGAGAAAGAGCTAGTTAATCTAATTGTTGTGTTTTTTTATGATCGTTGTTGTAGATTTTCCTTGCTAGTTTAGATTTATCTACATGTACGACATCAATCAATCTGAAAACTGCTCAATCGATCTGCTCCTCTGTGTATCCGAATCTTGATTCTTGTTCTCCTCTGTCGAAGACAAAGGAGCATAAGCTTGATTCTCAGTTGAGTTTAATGATTTTGTGTTTCATAAAGCCAATTGATAGTCATTGA

mRNA sequence

ATGTGTGGGCGAATTGGATCCCGCCTTGCATCAACTGAATCGGAAACCGTGGTGAAGATTGCTTCGGTTCTTGCCTTCCTCCAGATCTCAGATTTATCTACATGTACGACATCAATCAATCTGAAAACTGCTCAATCGATCTGCTCCTCTGTGTATCCGAATCTTGATTCTTGTTCTCCTCTGTCGAAGACAAAGGAGCATAAGCTTGATTCTCAGTTGAGTTTAATGATTTTGTGTTTCATAAAGCCAATTGATAGTCATTGA

Coding sequence (CDS)

ATGTGTGGGCGAATTGGATCCCGCCTTGCATCAACTGAATCGGAAACCGTGGTGAAGATTGCTTCGGTTCTTGCCTTCCTCCAGATCTCAGATTTATCTACATGTACGACATCAATCAATCTGAAAACTGCTCAATCGATCTGCTCCTCTGTGTATCCGAATCTTGATTCTTGTTCTCCTCTGTCGAAGACAAAGGAGCATAAGCTTGATTCTCAGTTGAGTTTAATGATTTTGTGTTTCATAAAGCCAATTGATAGTCATTGA

Protein sequence

MCGRIGSRLASTESETVVKIASVLAFLQISDLSTCTTSINLKTAQSICSSVYPNLDSCSPLSKTKEHKLDSQLSLMILCFIKPIDSH
Homology
[Close]
BLAST of CsGy4G006820 vs. NCBI nr
Match: KGN53463.1 (hypothetical protein Csa_4G056540 [Cucumis sativus])

HSP 1 Score: 168.3 bits (425), Expect = 1.1e-38
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0 

Query: 1   MCGRIGSRLASTESETVVKIASVLAFLQISDLSTCTTSINLKTAQSICSSVYPNLDSCSP 60
           MCGRIGSRLASTESETVVKIASVLAFLQISDLSTCTTSINLKTAQSICSSVYPNLDSCSP
Sbjct: 81  MCGRIGSRLASTESETVVKIASVLAFLQISDLSTCTTSINLKTAQSICSSVYPNLDSCSP 140

Query: 61  LSKTKEHKLDSQLSLMILCFIKPIDSH 88
           LSKTKEHKLDSQLSLMILCFIKPIDSH
Sbjct: 141 LSKTKEHKLDSQLSLMILCFIKPIDSH 167

[Close]
BLAST of CsGy4G006820 vs. TrEMBL
Match: tr|A0A0A0KV90|A0A0A0KV90_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G056540 PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 7.6e-39
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0 

Query: 1   MCGRIGSRLASTESETVVKIASVLAFLQISDLSTCTTSINLKTAQSICSSVYPNLDSCSP 60
           MCGRIGSRLASTESETVVKIASVLAFLQISDLSTCTTSINLKTAQSICSSVYPNLDSCSP
Sbjct: 81  MCGRIGSRLASTESETVVKIASVLAFLQISDLSTCTTSINLKTAQSICSSVYPNLDSCSP 140

Query: 61  LSKTKEHKLDSQLSLMILCFIKPIDSH 88
           LSKTKEHKLDSQLSLMILCFIKPIDSH
Sbjct: 141 LSKTKEHKLDSQLSLMILCFIKPIDSH 167

The following BLAST results are available for this feature:
BLAST of CsGy4G006820 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN53463.11.1e-38100.00hypothetical protein Csa_4G056540 [Cucumis sativus][more]
BLAST of CsGy4G006820 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsGy4G006820 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy4G006820 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KV90|A0A0A0KV90_CUCSA7.6e-39100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G056540 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy4G006820.1CsGy4G006820.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy4G006820Csa4G056540Cucumber (Chinese Long) v2cgybcuB165
CsGy4G006820CSPI04G06880Wild cucumber (PI 183967)cgybcpiB168
CsGy4G006820CsaV3_4G007090Cucumber (Chinese Long) v3cgybcucB171
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy4G006820Cucurbita maxima (Rimu)cgybcmaB498
CsGy4G006820Cucurbita maxima (Rimu)cgybcmaB541
CsGy4G006820Cucurbita moschata (Rifu)cgybcmoB467
CsGy4G006820Cucurbita moschata (Rifu)cgybcmoB515
CsGy4G006820Cucurbita pepo (Zucchini)cgybcpeB487
CsGy4G006820Cucurbita pepo (Zucchini)cgybcpeB501
CsGy4G006820Bottle gourd (USVL1VR-Ls)cgyblsiB278
CsGy4G006820Melon (DHL92) v3.5.1cgybmeB255
CsGy4G006820Melon (DHL92) v3.6.1cgybmedB254
CsGy4G006820Watermelon (Charleston Gray)cgybwcgB302
CsGy4G006820Watermelon (97103) v1cgybwmB289
CsGy4G006820Silver-seed gourdcarcgybB0047
CsGy4G006820Silver-seed gourdcarcgybB0652
CsGy4G006820Watermelon (97103) v2cgybwmbB304
CsGy4G006820Wax gourdcgybwgoB352