CsaV3_4G006500 (gene) Cucumber (Chinese Long) v3
The following sequences are available for this feature:
Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.GAAAATTAAAAGGAATCCACACAACTCCAAAAGTTAATTGTGGAAATAAAAAGAATTAAATAGACAAGTGATAAGAAAATGAAGGTTTGCCCGTTGCCCGTCTTTCAAGTTAAAATCCAAGTCAAGTCAAGAGTTAAATCCTACCCTACCTGCCCGAAATTTTCTCTCCGTCAAACCCTATAAATCTCCATTTCTCATCTTCCCCTGTTCCTTGCGATTGCAGCCATAACCATGGCCAAACTCACCCTAACCTTCCTTCTCTTCTTCGTCCTTGTCACTTCCTCATGCGCTCGAGATCTCATAAATTTACCGGACACATCAGAGTCCCTCACCTTTTCCGTCTCTGCACCCGCCCAGGATTCCGATTTCAAGTCCTCGATCCTCCTCCCGACCCAGAAATTGTCCGATGACGAATCTCCAAGATCCATACCAGACACCGATCAGGTACGCACCGAATCCAATCCTACTGAAATTACTGCTCTTGATACCATAGACACCGTTTCAGATCCGGTAGTTATGATCACTTTCCGTCCAATCAACCGTCAATTCGGTCGACCATCGGTGCCGCTGATGTTCCGGAGAGGCCGCCGCGGCTGTCACCACCTCCGCAGCGTGAAGCCGTGGAGATCAATCGATCGGCTAAATGAAATCTCATACGGAAACGACATGATCGTACCTGAGGAGCGATCGAACCCTAATTCTGGGTCGAACCGCGAAATTGCAATTCCGTCGAAATTGAGTGAGTTCCGACATGTCAGACCGTGGGAGGATTCGTACAGTAGCGATTGGAAGGAAGATAAGAAGCATCTCCATCATCATTATTTCCATCACCAACACCATGAAGAAGAAGAGCATGAACACAAAGAAAAGAGCAGTTTATTGAGGAAATTCCGTAAGTTTTTGAAGCATTTGGAGTTCTGAAGATACAAAATTAAACTACAAATGATACGATTATCTGTTCTTCAGGTTTATGTTTTTTCTTTTGCTTTTTCTTGAATTGCAATAAGGTAATTAGCGTTTTACATAGTTGTGTATAGGATTTTGAATCCTTAATATGTGTAATATAATAGCGTTGCTTATGTGAATGGGGAGTGTGTAACTTCACTTAATTAATTACAATAATTATGCATAATGTATCTATTTGCCTGTTCATGTTATATGAATTATGTTTTTGAATGCTTTGATGGATTATATGATTCTTGCATATTCAATTTTGTGTATATAATCATGAGAGAATTAAAAATTTTATTTATATTATTT ATGGCCAAACTCACCCTAACCTTCCTTCTCTTCTTCGTCCTTGTCACTTCCTCATGCGCTCGAGATCTCATAAATTTACCGGACACATCAGAGTCCCTCACCTTTTCCGTCTCTGCACCCGCCCAGGATTCCGATTTCAAGTCCTCGATCCTCCTCCCGACCCAGAAATTGTCCGATGACGAATCTCCAAGATCCATACCAGACACCGATCAGGTACGCACCGAATCCAATCCTACTGAAATTACTGCTCTTGATACCATAGACACCGTTTCAGATCCGGTAGTTATGATCACTTTCCGTCCAATCAACCGTCAATTCGGTCGACCATCGGTGCCGCTGATGTTCCGGAGAGGCCGCCGCGGCTGTCACCACCTCCGCAGCGTGAAGCCGTGGAGATCAATCGATCGGCTAAATGAAATCTCATACGGAAACGACATGATCGTACCTGAGGAGCGATCGAACCCTAATTCTGGGTCGAACCGCGAAATTGCAATTCCGTCGAAATTGAGTGAGTTCCGACATGTCAGACCGTGGGAGGATTCGTACAGTAGCGATTGGAAGGAAGATAAGAAGCATCTCCATCATCATTATTTCCATCACCAACACCATGAAGAAGAAGAGCATGAACACAAAGAAAAGAGCAGTTTATTGAGGAAATTCCGTAAGTTTTTGAAGCATTTGGAGTTCTGA ATGGCCAAACTCACCCTAACCTTCCTTCTCTTCTTCGTCCTTGTCACTTCCTCATGCGCTCGAGATCTCATAAATTTACCGGACACATCAGAGTCCCTCACCTTTTCCGTCTCTGCACCCGCCCAGGATTCCGATTTCAAGTCCTCGATCCTCCTCCCGACCCAGAAATTGTCCGATGACGAATCTCCAAGATCCATACCAGACACCGATCAGGTACGCACCGAATCCAATCCTACTGAAATTACTGCTCTTGATACCATAGACACCGTTTCAGATCCGGTAGTTATGATCACTTTCCGTCCAATCAACCGTCAATTCGGTCGACCATCGGTGCCGCTGATGTTCCGGAGAGGCCGCCGCGGCTGTCACCACCTCCGCAGCGTGAAGCCGTGGAGATCAATCGATCGGCTAAATGAAATCTCATACGGAAACGACATGATCGTACCTGAGGAGCGATCGAACCCTAATTCTGGGTCGAACCGCGAAATTGCAATTCCGTCGAAATTGAGTGAGTTCCGACATGTCAGACCGTGGGAGGATTCGTACAGTAGCGATTGGAAGGAAGATAAGAAGCATCTCCATCATCATTATTTCCATCACCAACACCATGAAGAAGAAGAGCATGAACACAAAGAAAAGAGCAGTTTATTGAGGAAATTCCGTAAGTTTTTGAAGCATTTGGAGTTCTGA MAKLTLTFLLFFVLVTSSCARDLINLPDTSESLTFSVSAPAQDSDFKSSILLPTQKLSDDESPRSIPDTDQVRTESNPTEITALDTIDTVSDPVVMITFRPINRQFGRPSVPLMFRRGRRGCHHLRSVKPWRSIDRLNEISYGNDMIVPEERSNPNSGSNREIAIPSKLSEFRHVRPWEDSYSSDWKEDKKHLHHHYFHHQHHEEEEHEHKEKSSLLRKFRKFLKHLEF
BLAST of CsaV3_4G006500 vs. NCBI nr
Match: KGN53397.1 (hypothetical protein Csa_4G051490 [Cucumis sativus]) HSP 1 Score: 343.2 bits (879), Expect = 6.8e-91 Identity = 228/229 (99.56%), Postives = 228/229 (99.56%), Query Frame = 0
BLAST of CsaV3_4G006500 vs. NCBI nr
Match: XP_024934980.1 (uncharacterized protein LOC112493417 [Ziziphus jujuba]) HSP 1 Score: 64.7 bits (156), Expect = 4.7e-07 Identity = 60/185 (32.43%), Postives = 84/185 (45.41%), Query Frame = 0
BLAST of CsaV3_4G006500 vs. NCBI nr
Match: GAV65784.1 (hypothetical protein CFOL_v3_09298 [Cephalotus follicularis]) HSP 1 Score: 57.8 bits (138), Expect = 5.7e-05 Identity = 57/181 (31.49%), Postives = 82/181 (45.30%), Query Frame = 0
BLAST of CsaV3_4G006500 vs. NCBI nr
Match: PQM36740.1 (uncharacterized protein Pyn_30755 [Prunus yedoensis var. nudiflora]) HSP 1 Score: 55.8 bits (133), Expect = 2.2e-04 Identity = 54/195 (27.69%), Postives = 83/195 (42.56%), Query Frame = 0
BLAST of CsaV3_4G006500 vs. NCBI nr
Match: PPR82156.1 (hypothetical protein GOBAR_AA38558 [Gossypium barbadense]) HSP 1 Score: 54.3 bits (129), Expect = 6.4e-04 Identity = 53/165 (32.12%), Postives = 77/165 (46.67%), Query Frame = 0
BLAST of CsaV3_4G006500 vs. TrEMBL
Match: tr|A0A0A0KYD0|A0A0A0KYD0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G051490 PE=4 SV=1) HSP 1 Score: 343.2 bits (879), Expect = 4.5e-91 Identity = 228/229 (99.56%), Postives = 228/229 (99.56%), Query Frame = 0
BLAST of CsaV3_4G006500 vs. TrEMBL
Match: tr|A0A1Q3BD69|A0A1Q3BD69_CEPFO (Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_09298 PE=4 SV=1) HSP 1 Score: 57.8 bits (138), Expect = 3.8e-05 Identity = 57/181 (31.49%), Postives = 82/181 (45.30%), Query Frame = 0
BLAST of CsaV3_4G006500 vs. TrEMBL
Match: tr|W9SFL4|W9SFL4_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_000045 PE=4 SV=1) HSP 1 Score: 54.3 bits (129), Expect = 4.2e-04 Identity = 56/183 (30.60%), Postives = 81/183 (44.26%), Query Frame = 0
BLAST of CsaV3_4G006500 vs. TrEMBL
Match: tr|A0A2P5VTJ4|A0A2P5VTJ4_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA38558 PE=4 SV=1) HSP 1 Score: 54.3 bits (129), Expect = 4.2e-04 Identity = 53/165 (32.12%), Postives = 77/165 (46.67%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |