CsaV3_4G005760 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G005760
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr4 : 3782383 .. 3782773 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGAAGAAACAGACGAAAAGAAAAAAGTTAGCCGCGGCAACTCACTCTGTATCGTCTTCACTATAATTTCCCTCGAATTTTCCGCTACATGGAAGGGGCAGGGAACTGGCTTCAGAAGCACTCAGTACTTGCAGGAAGATCTCCATTTTCTTGGGGGGTCCCTTTCAAGAAGAAAAAAAACAAAAGTTTGTCATCTTCTCCTTCTCCACCAGAAGTCTGAAAAGGTATAAATCTGACCAAGCACTGGCTAAAACTTCGCCACAACGCCCAAATCCACACCAGCCACAGATATTACAGGTTTTAACCTCTCAATTGGAGAACCTCACTTCCCAGGATATTCGATTTTTCTTTTTCATTCCCATTACATCAATTTTACAGTTTACTTAA

mRNA sequence

ATGGCTGAAGAAACAGACGAAAAGAAAAAAGTTAGCCGCGGCAACTCACTCTGTATCGTCTTCACTATAATTTCCCTCGAATTTTCCGCTACATGGAAGGGGCAGGGAACTGGCTTCAGAAGCACTCAAAGTCTGAAAAGGTATAAATCTGACCAAGCACTGGCTAAAACTTCGCCACAACGCCCAAATCCACACCAGCCACAGATATTACAGGTTTTAACCTCTCAATTGGAGAACCTCACTTCCCAGGATATTCGATTTTTCTTTTTCATTCCCATTACATCAATTTTACAGTTTACTTAA

Coding sequence (CDS)

ATGGCTGAAGAAACAGACGAAAAGAAAAAAGTTAGCCGCGGCAACTCACTCTGTATCGTCTTCACTATAATTTCCCTCGAATTTTCCGCTACATGGAAGGGGCAGGGAACTGGCTTCAGAAGCACTCAAAGTCTGAAAAGGTATAAATCTGACCAAGCACTGGCTAAAACTTCGCCACAACGCCCAAATCCACACCAGCCACAGATATTACAGGTTTTAACCTCTCAATTGGAGAACCTCACTTCCCAGGATATTCGATTTTTCTTTTTCATTCCCATTACATCAATTTTACAGTTTACTTAA

Protein sequence

MAEETDEKKKVSRGNSLCIVFTIISLEFSATWKGQGTGFRSTQSLKRYKSDQALAKTSPQRPNPHQPQILQVLTSQLENLTSQDIRFFFFIPITSILQFT
Homology
[Close]
BLAST of CsaV3_4G005760 vs. NCBI nr
Match: KGN53320.1 (hypothetical protein Csa_4G046830 [Cucumis sativus])

HSP 1 Score: 196.8 bits (499), Expect = 3.5e-47
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0 

Query: 1   MAEETDEKKKVSRGNSLCIVFTIISLEFSATWKGQGTGFRSTQSLKRYKSDQALAKTSPQ 60
           MAEETDEKKKVSRGNSLCIVFTIISLEFSATWKGQGTGFRSTQSLKRYKSDQALAKTSPQ
Sbjct: 1   MAEETDEKKKVSRGNSLCIVFTIISLEFSATWKGQGTGFRSTQSLKRYKSDQALAKTSPQ 60

Query: 61  RPNPHQPQILQVLTSQLENLTSQDIRFFFFIPITSILQFT 101
           RPNPHQPQILQVLTSQLENLTSQDIRFFFFIPITSILQFT
Sbjct: 61  RPNPHQPQILQVLTSQLENLTSQDIRFFFFIPITSILQFT 100

[Close]
BLAST of CsaV3_4G005760 vs. TrEMBL
Match: tr|A0A0A0KUL4|A0A0A0KUL4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G046830 PE=4 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 2.3e-47
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0 

Query: 1   MAEETDEKKKVSRGNSLCIVFTIISLEFSATWKGQGTGFRSTQSLKRYKSDQALAKTSPQ 60
           MAEETDEKKKVSRGNSLCIVFTIISLEFSATWKGQGTGFRSTQSLKRYKSDQALAKTSPQ
Sbjct: 1   MAEETDEKKKVSRGNSLCIVFTIISLEFSATWKGQGTGFRSTQSLKRYKSDQALAKTSPQ 60

Query: 61  RPNPHQPQILQVLTSQLENLTSQDIRFFFFIPITSILQFT 101
           RPNPHQPQILQVLTSQLENLTSQDIRFFFFIPITSILQFT
Sbjct: 61  RPNPHQPQILQVLTSQLENLTSQDIRFFFFIPITSILQFT 100

The following BLAST results are available for this feature:
BLAST of CsaV3_4G005760 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN53320.13.5e-47100.00hypothetical protein Csa_4G046830 [Cucumis sativus][more]
BLAST of CsaV3_4G005760 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G005760 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G005760 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KUL4|A0A0A0KUL4_CUCSA2.3e-47100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G046830 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G005760.1CsaV3_4G005760.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_4G005760CSPI04G05600Wild cucumber (PI 183967)cpicucB213
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_4G005760Cucumber (Chinese Long) v3cuccucB181
CsaV3_4G005760Silver-seed gourdcarcucB0440
CsaV3_4G005760Silver-seed gourdcarcucB0982
CsaV3_4G005760Silver-seed gourdcarcucB1063
CsaV3_4G005760Cucumber (Gy14) v2cgybcucB171
CsaV3_4G005760Cucumber (Gy14) v2cgybcucB287
CsaV3_4G005760Cucumber (Gy14) v1cgycucB134
CsaV3_4G005760Cucurbita maxima (Rimu)cmacucB0393
CsaV3_4G005760Cucurbita maxima (Rimu)cmacucB0796
CsaV3_4G005760Cucurbita maxima (Rimu)cmacucB0847
CsaV3_4G005760Cucurbita moschata (Rifu)cmocucB0388
CsaV3_4G005760Cucurbita moschata (Rifu)cmocucB0779
CsaV3_4G005760Cucurbita moschata (Rifu)cmocucB0833
CsaV3_4G005760Cucurbita pepo (Zucchini)cpecucB0089
CsaV3_4G005760Cucurbita pepo (Zucchini)cpecucB0266
CsaV3_4G005760Cucurbita pepo (Zucchini)cpecucB0497
CsaV3_4G005760Wild cucumber (PI 183967)cpicucB352
CsaV3_4G005760Bottle gourd (USVL1VR-Ls)cuclsiB276
CsaV3_4G005760Bottle gourd (USVL1VR-Ls)cuclsiB322
CsaV3_4G005760Melon (DHL92) v3.5.1cucmeB315
CsaV3_4G005760Melon (DHL92) v3.5.1cucmeB342
CsaV3_4G005760Melon (DHL92) v3.6.1cucmedB307
CsaV3_4G005760Melon (DHL92) v3.6.1cucmedB336
CsaV3_4G005760Watermelon (Charleston Gray)cucwcgB300
CsaV3_4G005760Watermelon (Charleston Gray)cucwcgB344
CsaV3_4G005760Watermelon (97103) v1cucwmB322
CsaV3_4G005760Watermelon (97103) v1cucwmB344
CsaV3_4G005760Watermelon (97103) v2cucwmbB271
CsaV3_4G005760Watermelon (97103) v2cucwmbB330
CsaV3_4G005760Wax gourdcucwgoB372
CsaV3_4G005760Wax gourdcucwgoB381