CsaV3_4G005760.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G005760.1
TypemRNA
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr4 : 3782383 .. 3782773 (-)
Sequence length303
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGAAGAAACAGACGAAAAGAAAAAAGTTAGCCGCGGCAACTCACTCTGTATCGTCTTCACTATAATTTCCCTCGAATTTTCCGCTACATGGAAGGGGCAGGGAACTGGCTTCAGAAGCACTCAGTACTTGCAGGAAGATCTCCATTTTCTTGGGGGGTCCCTTTCAAGAAGAAAAAAAACAAAAGTTTGTCATCTTCTCCTTCTCCACCAGAAGTCTGAAAAGGTATAAATCTGACCAAGCACTGGCTAAAACTTCGCCACAACGCCCAAATCCACACCAGCCACAGATATTACAGGTTTTAACCTCTCAATTGGAGAACCTCACTTCCCAGGATATTCGATTTTTCTTTTTCATTCCCATTACATCAATTTTACAGTTTACTTAA

mRNA sequence

ATGGCTGAAGAAACAGACGAAAAGAAAAAAGTTAGCCGCGGCAACTCACTCTGTATCGTCTTCACTATAATTTCCCTCGAATTTTCCGCTACATGGAAGGGGCAGGGAACTGGCTTCAGAAGCACTCAAAGTCTGAAAAGGTATAAATCTGACCAAGCACTGGCTAAAACTTCGCCACAACGCCCAAATCCACACCAGCCACAGATATTACAGGTTTTAACCTCTCAATTGGAGAACCTCACTTCCCAGGATATTCGATTTTTCTTTTTCATTCCCATTACATCAATTTTACAGTTTACTTAA

Coding sequence (CDS)

ATGGCTGAAGAAACAGACGAAAAGAAAAAAGTTAGCCGCGGCAACTCACTCTGTATCGTCTTCACTATAATTTCCCTCGAATTTTCCGCTACATGGAAGGGGCAGGGAACTGGCTTCAGAAGCACTCAAAGTCTGAAAAGGTATAAATCTGACCAAGCACTGGCTAAAACTTCGCCACAACGCCCAAATCCACACCAGCCACAGATATTACAGGTTTTAACCTCTCAATTGGAGAACCTCACTTCCCAGGATATTCGATTTTTCTTTTTCATTCCCATTACATCAATTTTACAGTTTACTTAA

Protein sequence

MAEETDEKKKVSRGNSLCIVFTIISLEFSATWKGQGTGFRSTQSLKRYKSDQALAKTSPQRPNPHQPQILQVLTSQLENLTSQDIRFFFFIPITSILQFT
Homology
[Close]
BLAST of CsaV3_4G005760.1 vs. NCBI nr
Match: KGN53320.1 (hypothetical protein Csa_4G046830 [Cucumis sativus])

HSP 1 Score: 196.8 bits (499), Expect = 3.5e-47
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0 

Query: 1   MAEETDEKKKVSRGNSLCIVFTIISLEFSATWKGQGTGFRSTQSLKRYKSDQALAKTSPQ 60
           MAEETDEKKKVSRGNSLCIVFTIISLEFSATWKGQGTGFRSTQSLKRYKSDQALAKTSPQ
Sbjct: 1   MAEETDEKKKVSRGNSLCIVFTIISLEFSATWKGQGTGFRSTQSLKRYKSDQALAKTSPQ 60

Query: 61  RPNPHQPQILQVLTSQLENLTSQDIRFFFFIPITSILQFT 101
           RPNPHQPQILQVLTSQLENLTSQDIRFFFFIPITSILQFT
Sbjct: 61  RPNPHQPQILQVLTSQLENLTSQDIRFFFFIPITSILQFT 100

[Close]
BLAST of CsaV3_4G005760.1 vs. TrEMBL
Match: tr|A0A0A0KUL4|A0A0A0KUL4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G046830 PE=4 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 2.3e-47
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0 

Query: 1   MAEETDEKKKVSRGNSLCIVFTIISLEFSATWKGQGTGFRSTQSLKRYKSDQALAKTSPQ 60
           MAEETDEKKKVSRGNSLCIVFTIISLEFSATWKGQGTGFRSTQSLKRYKSDQALAKTSPQ
Sbjct: 1   MAEETDEKKKVSRGNSLCIVFTIISLEFSATWKGQGTGFRSTQSLKRYKSDQALAKTSPQ 60

Query: 61  RPNPHQPQILQVLTSQLENLTSQDIRFFFFIPITSILQFT 101
           RPNPHQPQILQVLTSQLENLTSQDIRFFFFIPITSILQFT
Sbjct: 61  RPNPHQPQILQVLTSQLENLTSQDIRFFFFIPITSILQFT 100

The following BLAST results are available for this feature:
BLAST of CsaV3_4G005760.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN53320.13.5e-47100.00hypothetical protein Csa_4G046830 [Cucumis sativus][more]
BLAST of CsaV3_4G005760.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G005760.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G005760.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KUL4|A0A0A0KUL4_CUCSA2.3e-47100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G046830 PE=4 SV=1[more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_4G005760CsaV3_4G005760gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_4G005760.1.cds2CsaV3_4G005760.1.cds2CDS
CsaV3_4G005760.1.cds1CsaV3_4G005760.1.cds1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_4G005760.1.exon2CsaV3_4G005760.1.exon2exon
CsaV3_4G005760.1.exon1CsaV3_4G005760.1.exon1exon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_4G005760.1CsaV3_4G005760.1-proteinpolypeptide