CsaV3_3G043220 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G043220
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionCDT1-like protein a, chloroplastic
Locationchr3 : 35085540 .. 35086142 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGGTGCTTCAAACAAGATTTCTTCACCTTCATCAACTTTACCCTTCAAATCCAACAAAAATGTGAGCTCCAACTCCACATCATTGCTTAAGGATCCGCAGTCTTTGAGCTCCAAGACGCCGGAGAAGCCGGCGGAGCGAACTAGGAAACGGAAGAAGGTTGCGCTTTCCATTGAAGAGGTTGAACGAGCTGCTCAGAGCGTCCATGAATCTAATAGTCAGTTGCTGCCTCATGATCTGACCACTGAAGGGAGTAAAGTAGTTAGAAGACGGATGGATTCGCGGTCGAATGAAAGTCAATCTAGTAGCTCCGATAGTACTTGTGTTGATAATAAGTACTCCAATAAATTGCCTGAGAAGTAAGTCGTTTTGTTTATCTTGATCTTGATGTTTTGCTTATTAATTGATGGTTGGCTGGTTGTTTAGATCTACTTTGAGTGTTTGGTGAATGAGTTTTCTTACTTTGGTGTGTTTTGCAGATTTGAGCTGCTGTGTAAGTTCTTTGATTGCTTGAATTTTGCAATGCGGTTGTTACGATGTAAAGGTGTAGCCTCCAACTTCTCCCACGTTTGCTCTAAGATTGAAGTCCTCACTGATAGG

mRNA sequence

ATGGCGGGTGCTTCAAACAAGATTTCTTCACCTTCATCAACTTTACCCTTCAAATCCAACAAAAATGTGAGCTCCAACTCCACATCATTGCTTAAGGATCCGCAGTCTTTGAGCTCCAAGACGCCGGAGAAGCCGGCGGAGCGAACTAGGAAACGGAAGAAGGTTGCGCTTTCCATTGAAGAGGTTGAACGAGCTGCTCAGAGCGTCCATGAATCTAATAGTCAGTTGCTGCCTCATGATCTGACCACTGAAGGGAGTAAAGTAGTTAGAAGACGGATGGATTCGCGGTCGAATGAAAGTCAATCTAGTAGCTCCGATAGTACTTGTGTTGATAATAAGTACTCCAATAAATTGCCTGAGAAATTTGAGCTGCTGTGTAAGTTCTTTGATTGCTTGAATTTTGCAATGCGGTTGTTACGATGTAAAGGTGTAGCCTCCAACTTCTCCCACGTTTGCTCTAAGATTGAAGTCCTCACTGATAGG

Coding sequence (CDS)

ATGGCGGGTGCTTCAAACAAGATTTCTTCACCTTCATCAACTTTACCCTTCAAATCCAACAAAAATGTGAGCTCCAACTCCACATCATTGCTTAAGGATCCGCAGTCTTTGAGCTCCAAGACGCCGGAGAAGCCGGCGGAGCGAACTAGGAAACGGAAGAAGGTTGCGCTTTCCATTGAAGAGGTTGAACGAGCTGCTCAGAGCGTCCATGAATCTAATAGTCAGTTGCTGCCTCATGATCTGACCACTGAAGGGAGTAAAGTAGTTAGAAGACGGATGGATTCGCGGTCGAATGAAAGTCAATCTAGTAGCTCCGATAGTACTTGTGTTGATAATAAGTACTCCAATAAATTGCCTGAGAAATTTGAGCTGCTGTGTAAGTTCTTTGATTGCTTGAATTTTGCAATGCGGTTGTTACGATGTAAAGGTGTAGCCTCCAACTTCTCCCACGTTTGCTCTAAGATTGAAGTCCTCACTGATAGG

Protein sequence

MAGASNKISSPSSTLPFKSNKNVSSNSTSLLKDPQSLSSKTPEKPAERTRKRKKVALSIEEVERAAQSVHESNSQLLPHDLTTEGSKVVRRRMDSRSNESQSSSSDSTCVDNKYSNKLPEKFELLCKFFDCLNFAMRLLRCKGVASNFSHVCSKIEVLTDR
Homology
[Close]
BLAST of CsaV3_3G043220 vs. NCBI nr
Match: XP_008447443.1 (PREDICTED: CDT1-like protein a, chloroplastic [Cucumis melo])

HSP 1 Score: 221.1 bits (562), Expect = 2.7e-54
Identity = 132/161 (81.99%), Postives = 143/161 (88.82%), Query Frame = 0 

Query: 1   MAGASNKISSPSSTLPFKSNKNVSSNSTSLLKDPQSLSSKTPEKPAERTRKRKKVALSIE 60
           MA AS+ ISSPSSTLPFKS KN+ SN  SLLKDPQSLSSKTPEKPAERTRKR KVALSI+
Sbjct: 1   MADASHNISSPSSTLPFKSKKNLGSNFKSLLKDPQSLSSKTPEKPAERTRKR-KVALSIK 60

Query: 61  EVERAAQSVHESNSQLLPHDLTTEGSKVVRRRMDSRSNESQSSSSDSTCVDNKYSNKLPE 120
           EV+RAAQSV+ESN Q LPHDLTT+GSK+VRR+MDS SNES SS S  TCVD K SNKLPE
Sbjct: 61  EVKRAAQSVNESNRQ-LPHDLTTKGSKLVRRQMDSSSNESLSSRS-KTCVDKK-SNKLPE 120

Query: 121 KFELLCKFFDCLNFAMRLLRCKGVASNFSHVCSKIEVLTDR 162
           KFELLCKFFDCL+ AMRLLR KGVASNFS+VC+KIEVLTDR
Sbjct: 121 KFELLCKFFDCLDSAMRLLRFKGVASNFSNVCTKIEVLTDR 157

[Close]
BLAST of CsaV3_3G043220 vs. NCBI nr
Match: XP_004151978.2 (PREDICTED: CDT1-like protein a, chloroplastic [Cucumis sativus] >XP_011651447.1 PREDICTED: CDT1-like protein a, chloroplastic [Cucumis sativus] >KGN57930.1 hypothetical protein Csa_3G394670 [Cucumis sativus])

HSP 1 Score: 220.7 bits (561), Expect = 3.6e-54
Identity = 132/161 (81.99%), Postives = 142/161 (88.20%), Query Frame = 0 

Query: 1   MAGASNKISSPSSTLPFKSNKNVSSNSTSLLKDPQSLSSKTPEKPAERTRKRKKVALSIE 60
           MA ASNKISS SSTLPFKS KN+ SNS+SLLKDPQSLSS+TPEKP ER RKR KVALSI+
Sbjct: 1   MADASNKISSRSSTLPFKSKKNLGSNSSSLLKDPQSLSSRTPEKPVERNRKR-KVALSIK 60

Query: 61  EVERAAQSVHESNSQLLPHDLTTEGSKVVRRRMDSRSNESQSSSSDSTCVDNKYSNKLPE 120
           EV++AAQSVHESN Q L HDLTT GSK+VRR+MDS SNESQSS S  TCVDNK SNKLPE
Sbjct: 61  EVKQAAQSVHESNRQ-LHHDLTTRGSKLVRRQMDSWSNESQSSRS-KTCVDNK-SNKLPE 120

Query: 121 KFELLCKFFDCLNFAMRLLRCKGVASNFSHVCSKIEVLTDR 162
           KFELLCKFFDCL+ AMRLLR KGVASNFS VC+KIEVLTDR
Sbjct: 121 KFELLCKFFDCLDSAMRLLRFKGVASNFSSVCTKIEVLTDR 157

[Close]
BLAST of CsaV3_3G043220 vs. NCBI nr
Match: XP_011652798.1 (PREDICTED: CDT1-like protein a, chloroplastic [Cucumis sativus])

HSP 1 Score: 218.4 bits (555), Expect = 1.8e-53
Identity = 131/161 (81.37%), Postives = 141/161 (87.58%), Query Frame = 0 

Query: 1   MAGASNKISSPSSTLPFKSNKNVSSNSTSLLKDPQSLSSKTPEKPAERTRKRKKVALSIE 60
           MA ASNKISS SSTLPFKS KN+ SNS+SLLKDPQSLSS+TPEKP ER RKR KVALSI+
Sbjct: 1   MADASNKISSRSSTLPFKSKKNLGSNSSSLLKDPQSLSSRTPEKPVERNRKR-KVALSIK 60

Query: 61  EVERAAQSVHESNSQLLPHDLTTEGSKVVRRRMDSRSNESQSSSSDSTCVDNKYSNKLPE 120
           EV++AAQSVHESN Q L HDLTT GSK+VRR+MDS S ESQSS S  TCVDNK SNKLPE
Sbjct: 61  EVKQAAQSVHESNRQ-LHHDLTTRGSKLVRRQMDSWSTESQSSRS-KTCVDNK-SNKLPE 120

Query: 121 KFELLCKFFDCLNFAMRLLRCKGVASNFSHVCSKIEVLTDR 162
           KFELLCKFFDCL+ AMRLLR KGVASNFS VC+KIEVLTDR
Sbjct: 121 KFELLCKFFDCLDSAMRLLRFKGVASNFSSVCTKIEVLTDR 157

[Close]
BLAST of CsaV3_3G043220 vs. NCBI nr
Match: KGN59753.1 (hypothetical protein Csa_3G842990 [Cucumis sativus])

HSP 1 Score: 216.9 bits (551), Expect = 5.2e-53
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0 

Query: 1   MAGASNKISSPSSTLPFKSNKNVSSNSTSLLKDPQSLSSKTPEKPAERTRKRKKVALSIE 60
           MAGASNKISSPSSTLPFKSNKNVSSNSTSLLKDPQSLSSKTPEKPAERTRKRKKVALSIE
Sbjct: 1   MAGASNKISSPSSTLPFKSNKNVSSNSTSLLKDPQSLSSKTPEKPAERTRKRKKVALSIE 60

Query: 61  EVERAAQSVHESNSQLLPHDLTTEGSKVVRRRMDSRSNESQSSSSDSTCVDNKYSNKLPE 120
           EVERAAQSVHESNSQLLPHDLTTEGSKVVRRRMDSRSNESQSSSSDSTCVDNKYSNKLPE
Sbjct: 61  EVERAAQSVHESNSQLLPHDLTTEGSKVVRRRMDSRSNESQSSSSDSTCVDNKYSNKLPE 120

Query: 121 K 122
           K
Sbjct: 121 K 121

[Close]
BLAST of CsaV3_3G043220 vs. NCBI nr
Match: XP_023553630.1 (CDT1-like protein b [Cucurbita pepo subsp. pepo])

HSP 1 Score: 175.3 bits (443), Expect = 1.7e-40
Identity = 116/161 (72.05%), Postives = 125/161 (77.64%), Query Frame = 0 

Query: 4   ASNKISSPSSTLPFKSNKNVSSNSTSLLKDPQSLSSKTPEKPAE---RTRKRKKVALSIE 63
           AS KISSPSS+LPFKS K + SNS SLL+D QSLSSKTPEKPAE   RTR R KV LSI+
Sbjct: 3   ASEKISSPSSSLPFKSKKTLRSNSKSLLQDQQSLSSKTPEKPAELTTRTRSR-KVVLSIK 62

Query: 64  EVERAAQSVHESNSQLLPHDLTTEGSKVVRRRMDSRSNESQSSSSDSTCVDNKYSNKLPE 123
           EV RAA+SV ESN Q LP DLTTEGSK VRR++DS SNES SS    T VD   S KLPE
Sbjct: 63  EVRRAAESVRESNRQ-LPRDLTTEGSKSVRRQIDSWSNESPSSRF-KTSVDK--SKKLPE 122

Query: 124 KFELLCKFFDCLNFAMRLLRCKGVASNFSHVCSKIEVLTDR 162
           KFE L KFFD L+  MRLLR KGVASNFS+VC KIEVLTDR
Sbjct: 123 KFEFLSKFFDSLDSVMRLLRFKGVASNFSNVCPKIEVLTDR 158

[Close]
BLAST of CsaV3_3G043220 vs. TAIR10
Match: AT3G54710.1 (homolog of yeast CDT1 B homolog of yeast CDT1 B)

HSP 1 Score: 52.8 bits (125), Expect = 2.3e-07
Identity = 23/45 (51.11%), Postives = 37/45 (82.22%), Query Frame = 0 

Query: 117 KLPEKFELLCKFFDCLNFAMRLLRCKGVASNFSHVCSKIEVLTDR 162
           KLPE+FE+L +FF+ L+ A+RLL+ KG ++ ++++C KIE LT+R
Sbjct: 45  KLPERFEILEEFFNGLDTAIRLLKLKGSSTTYANICPKIEYLTNR 89

[Close]
BLAST of CsaV3_3G043220 vs. TAIR10
Match: AT2G31270.1 (homolog of yeast CDT1 A)

HSP 1 Score: 43.1 bits (100), Expect = 1.9e-04
Identity = 48/164 (29.27%), Postives = 74/164 (45.12%), Query Frame = 0 

Query: 8   ISSPSS--TLPFKSNKNV-----SSNSTSLLKDPQSLSSKTPEKPAERTRKR---KKVAL 67
           +S+P S  ++PFKS K +     SS S +   +P S++  TPEKP E    R   + VAL
Sbjct: 1   MSTPGSSRSIPFKSKKRLVMDSPSSKSQTGNPNPSSVALPTPEKPLENMLSRSRNRSVAL 60

Query: 68  SIEEVERAAQSVHESNSQLLPHDLTTEGSKVVRRRMDSRSNESQSSSSDSTCVDNKYSNK 127
           S++E+ +AA                                    +  +          K
Sbjct: 61  SVKEIRQAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEKE----------K 120

Query: 128 LPEKFELLCKFFDCLNFAMRLLRCKGVASNFSHVCSKIEVLTDR 162
           LPEK+E L KFF+ L+ +M L + +G    FS++  +IE LT+R
Sbjct: 121 LPEKYENLGKFFEALDNSMLLSKLRGSKPTFSNISKQIEHLTER 154

[Close]
BLAST of CsaV3_3G043220 vs. Swiss-Prot
Match: sp|Q9M1S9|CDT1B_ARATH (CDT1-like protein b OS=Arabidopsis thaliana OX=3702 GN=CDT1B PE=1 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 4.2e-06
Identity = 23/45 (51.11%), Postives = 37/45 (82.22%), Query Frame = 0 

Query: 117 KLPEKFELLCKFFDCLNFAMRLLRCKGVASNFSHVCSKIEVLTDR 162
           KLPE+FE+L +FF+ L+ A+RLL+ KG ++ ++++C KIE LT+R
Sbjct: 45  KLPERFEILEEFFNGLDTAIRLLKLKGSSTTYANICPKIEYLTNR 89

[Close]
BLAST of CsaV3_3G043220 vs. TrEMBL
Match: tr|A0A1S3BGW9|A0A1S3BGW9_CUCME (CDT1-like protein a, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103489888 PE=4 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 1.8e-54
Identity = 132/161 (81.99%), Postives = 143/161 (88.82%), Query Frame = 0 

Query: 1   MAGASNKISSPSSTLPFKSNKNVSSNSTSLLKDPQSLSSKTPEKPAERTRKRKKVALSIE 60
           MA AS+ ISSPSSTLPFKS KN+ SN  SLLKDPQSLSSKTPEKPAERTRKR KVALSI+
Sbjct: 1   MADASHNISSPSSTLPFKSKKNLGSNFKSLLKDPQSLSSKTPEKPAERTRKR-KVALSIK 60

Query: 61  EVERAAQSVHESNSQLLPHDLTTEGSKVVRRRMDSRSNESQSSSSDSTCVDNKYSNKLPE 120
           EV+RAAQSV+ESN Q LPHDLTT+GSK+VRR+MDS SNES SS S  TCVD K SNKLPE
Sbjct: 61  EVKRAAQSVNESNRQ-LPHDLTTKGSKLVRRQMDSSSNESLSSRS-KTCVDKK-SNKLPE 120

Query: 121 KFELLCKFFDCLNFAMRLLRCKGVASNFSHVCSKIEVLTDR 162
           KFELLCKFFDCL+ AMRLLR KGVASNFS+VC+KIEVLTDR
Sbjct: 121 KFELLCKFFDCLDSAMRLLRFKGVASNFSNVCTKIEVLTDR 157

[Close]
BLAST of CsaV3_3G043220 vs. TrEMBL
Match: tr|A0A0A0L7I7|A0A0A0L7I7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G394670 PE=4 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 2.4e-54
Identity = 132/161 (81.99%), Postives = 142/161 (88.20%), Query Frame = 0 

Query: 1   MAGASNKISSPSSTLPFKSNKNVSSNSTSLLKDPQSLSSKTPEKPAERTRKRKKVALSIE 60
           MA ASNKISS SSTLPFKS KN+ SNS+SLLKDPQSLSS+TPEKP ER RKR KVALSI+
Sbjct: 1   MADASNKISSRSSTLPFKSKKNLGSNSSSLLKDPQSLSSRTPEKPVERNRKR-KVALSIK 60

Query: 61  EVERAAQSVHESNSQLLPHDLTTEGSKVVRRRMDSRSNESQSSSSDSTCVDNKYSNKLPE 120
           EV++AAQSVHESN Q L HDLTT GSK+VRR+MDS SNESQSS S  TCVDNK SNKLPE
Sbjct: 61  EVKQAAQSVHESNRQ-LHHDLTTRGSKLVRRQMDSWSNESQSSRS-KTCVDNK-SNKLPE 120

Query: 121 KFELLCKFFDCLNFAMRLLRCKGVASNFSHVCSKIEVLTDR 162
           KFELLCKFFDCL+ AMRLLR KGVASNFS VC+KIEVLTDR
Sbjct: 121 KFELLCKFFDCLDSAMRLLRFKGVASNFSSVCTKIEVLTDR 157

[Close]
BLAST of CsaV3_3G043220 vs. TrEMBL
Match: tr|A0A0A0LD77|A0A0A0LD77_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G842990 PE=4 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 3.4e-53
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0 

Query: 1   MAGASNKISSPSSTLPFKSNKNVSSNSTSLLKDPQSLSSKTPEKPAERTRKRKKVALSIE 60
           MAGASNKISSPSSTLPFKSNKNVSSNSTSLLKDPQSLSSKTPEKPAERTRKRKKVALSIE
Sbjct: 1   MAGASNKISSPSSTLPFKSNKNVSSNSTSLLKDPQSLSSKTPEKPAERTRKRKKVALSIE 60

Query: 61  EVERAAQSVHESNSQLLPHDLTTEGSKVVRRRMDSRSNESQSSSSDSTCVDNKYSNKLPE 120
           EVERAAQSVHESNSQLLPHDLTTEGSKVVRRRMDSRSNESQSSSSDSTCVDNKYSNKLPE
Sbjct: 61  EVERAAQSVHESNSQLLPHDLTTEGSKVVRRRMDSRSNESQSSSSDSTCVDNKYSNKLPE 120

Query: 121 K 122
           K
Sbjct: 121 K 121

[Close]
BLAST of CsaV3_3G043220 vs. TrEMBL
Match: tr|A0A1S3CEP6|A0A1S3CEP6_CUCME (CDT1-like protein b OS=Cucumis melo OX=3656 GN=LOC103500097 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 2.0e-37
Identity = 112/164 (68.29%), Postives = 126/164 (76.83%), Query Frame = 0 

Query: 1   MAGASNKI-SSPSSTLPFKSNKNVSSNSTSLLKDPQSLSSKTPEKPAE-RTRKR-KKVAL 60
           MA AS KI SS SSTLPFK  K + SN  SLL+D QSLSSKTPEKPAE  TR R +KVAL
Sbjct: 1   MADASKKISSSSSSTLPFKLKKPLCSNFKSLLEDSQSLSSKTPEKPAELSTRSRNRKVAL 60

Query: 61  SIEEVERAAQSVHESNSQLLPHDLTTEGSKVVRRRMDSRSNESQSSSSDSTCVDNKYSNK 120
           SI+EV++AA+SV ESN Q LP DL TE  K VRR++DS SNESQS       V+NK S K
Sbjct: 61  SIKEVKQAAKSVRESNRQ-LPLDLATEERKSVRRQIDSWSNESQS-------VENK-SRK 120

Query: 121 LPEKFELLCKFFDCLNFAMRLLRCKGVASNFSHVCSKIEVLTDR 162
           LPEKFE+LCKFF  L+ AMRLLRCKGVASNFS+VC K+E LTDR
Sbjct: 121 LPEKFEMLCKFFYSLDSAMRLLRCKGVASNFSNVCPKVEALTDR 155

[Close]
BLAST of CsaV3_3G043220 vs. TrEMBL
Match: tr|A0A1S3C211|A0A1S3C211_CUCME (CDT1-like protein b OS=Cucumis melo OX=3656 GN=LOC103495953 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 1.3e-23
Identity = 93/168 (55.36%), Postives = 103/168 (61.31%), Query Frame = 0 

Query: 1   MAGASNKI-----SSPSSTLPFKSNKNVSSNSTSLLKDPQSLSSKT--PEKPAERTRKRK 60
           MA AS KI           LPFKS K + SNS SLL+DPQSLSSKT              
Sbjct: 1   MADASKKIXXXXXXXXXXXLPFKSKKPLRSNSKSLLEDPQSLSSKTXXXXXXXXXXXXXX 60

Query: 61  KVALSIEEVERAAQSVHESNSQLLPHDLTTEGSKVVRRRMDSRSNESQSSSSDSTCVDNK 120
                 +EV+RAA SV +SN Q LP  L  E SK VRR++D  SNESQS       VDNK
Sbjct: 61  XXXXXXKEVKRAALSVTQSNRQ-LPLHLAIEESKSVRRQIDLWSNESQS-------VDNK 120

Query: 121 YSNKLPEKFELLCKFFDCLNFAMRLLRCKGVASNFSHVCSKIEVLTDR 162
            S K PEKFE+LCKFF  L+ AMRLLR KGVASNFS+VC KIE LTDR
Sbjct: 121 -SKKFPEKFEMLCKFFYSLDSAMRLLRFKGVASNFSNVCPKIEALTDR 159

The following BLAST results are available for this feature:
BLAST of CsaV3_3G043220 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008447443.12.7e-5481.99PREDICTED: CDT1-like protein a, chloroplastic [Cucumis melo][more]
XP_004151978.23.6e-5481.99PREDICTED: CDT1-like protein a, chloroplastic [Cucumis sativus] >XP_011651447.1 ... [more]
XP_011652798.11.8e-5381.37PREDICTED: CDT1-like protein a, chloroplastic [Cucumis sativus][more]
KGN59753.15.2e-53100.00hypothetical protein Csa_3G842990 [Cucumis sativus][more]
XP_023553630.11.7e-4072.05CDT1-like protein b [Cucurbita pepo subsp. pepo][more]
BLAST of CsaV3_3G043220 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G54710.12.3e-0751.11homolog of yeast CDT1 B homolog of yeast CDT1 B[more]
AT2G31270.11.9e-0429.27homolog of yeast CDT1 A[more]
BLAST of CsaV3_3G043220 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9M1S9|CDT1B_ARATH4.2e-0651.11CDT1-like protein b OS=Arabidopsis thaliana OX=3702 GN=CDT1B PE=1 SV=1[more]
BLAST of CsaV3_3G043220 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BGW9|A0A1S3BGW9_CUCME1.8e-5481.99CDT1-like protein a, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103489888 PE=4 ... [more]
tr|A0A0A0L7I7|A0A0A0L7I7_CUCSA2.4e-5481.99Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G394670 PE=4 SV=1[more]
tr|A0A0A0LD77|A0A0A0LD77_CUCSA3.4e-53100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G842990 PE=4 SV=1[more]
tr|A0A1S3CEP6|A0A1S3CEP6_CUCME2.0e-3768.29CDT1-like protein b OS=Cucumis melo OX=3656 GN=LOC103500097 PE=4 SV=1[more]
tr|A0A1S3C211|A0A1S3C211_CUCME1.3e-2355.36CDT1-like protein b OS=Cucumis melo OX=3656 GN=LOC103495953 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036390WH_DNA-bd_sf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G043220.1CsaV3_3G043220.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..111
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..42
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 43..67
NoneNo IPR availablePANTHERPTHR28637:SF5CDT1-LIKE PROTEIN Bcoord: 6..161
NoneNo IPR availablePANTHERPTHR28637FAMILY NOT NAMEDcoord: 6..161
IPR036390Winged helix DNA-binding domain superfamilySUPERFAMILYSSF46785"Winged helix" DNA-binding domaincoord: 113..161

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_3G043220CSPI03G40710Wild cucumber (PI 183967)cpicucB145
CsaV3_3G043220Cucsa.340470Cucumber (Gy14) v1cgycucB523
CsaV3_3G043220CsGy3G038190Cucumber (Gy14) v2cgybcucB117
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_3G043220Cucurbita maxima (Rimu)cmacucB0293
CsaV3_3G043220Cucurbita moschata (Rifu)cmocucB0277
CsaV3_3G043220Bottle gourd (USVL1VR-Ls)cuclsiB203
CsaV3_3G043220Melon (DHL92) v3.5.1cucmeB218
CsaV3_3G043220Melon (DHL92) v3.6.1cucmedB211
CsaV3_3G043220Watermelon (Charleston Gray)cucwcgB199
CsaV3_3G043220Watermelon (97103) v1cucwmB208
CsaV3_3G043220Watermelon (97103) v2cucwmbB187
CsaV3_3G043220Wax gourdcucwgoB241