CsGy3G038190 (gene) Cucumber (Gy14) v2

Overview
NameCsGy3G038190
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionCDT1-like protein a, chloroplastic
LocationChr3 : 35932372 .. 35934185 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGGTGCTTCAAACAAGATTTCTTCACCTTCATCAACTTTACCCTTCAAATCCAACAAAAATGTGAGCTCCAACTCCACATCATTGCTTAAGGATCCGCAGTCTTCGAGTCTCTGGGAGCGAACTAGGAAACGGAAGAAGGTTGCGCTTTCCATTAAAGAGGTTGAACGAGCTGCTCAGAGCGTCCATGAATTTAATAGTCAGTTGCTGCCTCATGATCTGACCACTGAAGGGAGTAAAGTAGTTAGAAGACGGATGGATTCGCGGTCGAATGAAAGTCAATCTAGTAGCTCCAATAGTACTTGTGTTGATAATAAGTTCTCCAATAAATTGCCTGAGAAGTAAGTCGTTTTGTTTATCTTGATCTTGATGTTTTGCTTATTAATTGATGGTTGGCTGGTTGTTTAGATCTACTTTGAGTGTTTGGTGAATGAGTTTTCTTACTTTGGTGTGTTTTGCAGATTTGAGCTGCTGTGTAAGTTCTTTGATTGCTTGAATTTTGCAATGCGGTTGTTACGATGTAAAGGTGTAGCCTCCAACTTCTCCAACGTTTGCTCTAAAATTGAAGTCCTCACTGATAGGTACTTTACTTATTCTGCCTTCTCCATCCATTTCTGTGCTGATACTGTTCGTAGTAATTTTCCAATAATCTATCTGCCTGGATGACTAAGTAAATTGAAGAAGTTTGTGAATTTTGTTATTGTTGGCTTGTAAAAGAAATAAAGAATACTGCTTTTGTAATGACAAACAATTAAGAACAAGAAAGAATGTGGATCTTGGTCTGCATATATGATTTTTTTATTTATTTTGCGAATTGAAATTGTATTTGTTTGGGTATAGGAAGTTGAGCCTCTTAAGATTTACAATTTTGTGTTGACAAGTTTTAATCCTTCTAGTTTTACTTCATTTTGTGGCACATACATCTTAGACTTCTTATATGACTCAAAGAAGAGTATCTCAAGACGTTATACTGTGTTTTTTTATTATAAATTTGTGTGTTTTTTTATTATAAATTTGATGGTTATGATTGCAGGAGGTTTTCATACAGTCATTTGGCTCAACTGAAGTTTATTTTACCTGAAGCAATTGTGGTTAAGAAAGTTGCGGTCTTTGATGAGTGTACCAACTGGAAGAAGCCAGAATTTCATATATCTTTCAATTTTGGTGTCCTAGCTGTAGACAGTAAGGAAAACCATTATAGGCAATTGAGGAAGTTGTTTAGGATACAGCTTTCAGAATTTGTGAGTTCCCATCCATAAGTATGCCACCATTTTTCTTCTATGATTTGAAAATGTATTTATTTGTATATGTGTTTACAAATCCTAGAATATGTATGTTGGTTCTCTTCGTAGACATTGGCATGAAATGTGAAAACTTATGTGCCCTCTATAGTCATTCTAGTTCTCGCTCTATTTTCAACTCGACATGAAGATTTAAAACAAACTATGTTGACGTTATTTTTTTTCAAATTTTATAGTCAGAATTGGGAATACATTTGGTGAATTGTAGCATTCTGATCATAGAAGTTGTTATCATTAGCATCATGGCCACTTGAGATGGCTTGACTTTTCTCTTTCGTTGACATGCTTTTCTGTATTCAGATTGATGACGTTCCAGCATTCAATTTCAGAACCCAAGATCTTCTCTCAAAAACCAAGACGTTATCTTATGTCAAGACATCAATTGAGCAACTAGCGCCTGGGCAACCAATGCCATCAGCAAAAGGCATTTCCTCTAATCATAATTCAGAAGAAAATCAAGGTTTCCCAATGATTAAATCTACCATGACTGGTCATGGCCCAAATAAATAG

mRNA sequence

ATGGCGGGTGCTTCAAACAAGATTTCTTCACCTTCATCAACTTTACCCTTCAAATCCAACAAAAATGTGAGCTCCAACTCCACATCATTGCTTAAGGATCCGCAGTCTTCGAGTCTCTGGGAGCGAACTAGGAAACGGAAGAAGGTTGCGCTTTCCATTAAAGAGGTTGAACGAGCTGCTCAGAGCGTCCATGAATTTAATAGTCAGTTGCTGCCTCATGATCTGACCACTGAAGGGAGTAAAGTAGTTAGAAGACGGATGGATTCGCGGTCGAATGAAAGTCAATCTAGTAGCTCCAATAGTACTTGTGTTGATAATAAGTTCTCCAATAAATTGCCTGAGAAATTTGAGCTGCTGTGTAAGTTCTTTGATTGCTTGAATTTTGCAATGCGGTTGTTACGATGTAAAGGTGTAGCCTCCAACTTCTCCAACGTTTGCTCTAAAATTGAAGTCCTCACTGATAGGAGGTTTTCATACAGTCATTTGGCTCAACTGAAGTTTATTTTACCTGAAGCAATTGTGGTTAAGAAAGTTGCGATTGATGACGTTCCAGCATTCAATTTCAGAACCCAAGATCTTCTCTCAAAAACCAAGACGTTATCTTATGTCAAGACATCAATTGAGCAACTAGCGCCTGGGCAACCAATGCCATCAGCAAAAGGCATTTCCTCTAATCATAATTCAGAAGAAAATCAAGGTTTCCCAATGATTAAATCTACCATGACTGGTCATGGCCCAAATAAATAG

Coding sequence (CDS)

ATGGCGGGTGCTTCAAACAAGATTTCTTCACCTTCATCAACTTTACCCTTCAAATCCAACAAAAATGTGAGCTCCAACTCCACATCATTGCTTAAGGATCCGCAGTCTTCGAGTCTCTGGGAGCGAACTAGGAAACGGAAGAAGGTTGCGCTTTCCATTAAAGAGGTTGAACGAGCTGCTCAGAGCGTCCATGAATTTAATAGTCAGTTGCTGCCTCATGATCTGACCACTGAAGGGAGTAAAGTAGTTAGAAGACGGATGGATTCGCGGTCGAATGAAAGTCAATCTAGTAGCTCCAATAGTACTTGTGTTGATAATAAGTTCTCCAATAAATTGCCTGAGAAATTTGAGCTGCTGTGTAAGTTCTTTGATTGCTTGAATTTTGCAATGCGGTTGTTACGATGTAAAGGTGTAGCCTCCAACTTCTCCAACGTTTGCTCTAAAATTGAAGTCCTCACTGATAGGAGGTTTTCATACAGTCATTTGGCTCAACTGAAGTTTATTTTACCTGAAGCAATTGTGGTTAAGAAAGTTGCGATTGATGACGTTCCAGCATTCAATTTCAGAACCCAAGATCTTCTCTCAAAAACCAAGACGTTATCTTATGTCAAGACATCAATTGAGCAACTAGCGCCTGGGCAACCAATGCCATCAGCAAAAGGCATTTCCTCTAATCATAATTCAGAAGAAAATCAAGGTTTCCCAATGATTAAATCTACCATGACTGGTCATGGCCCAAATAAATAG

Protein sequence

MAGASNKISSPSSTLPFKSNKNVSSNSTSLLKDPQSSSLWERTRKRKKVALSIKEVERAAQSVHEFNSQLLPHDLTTEGSKVVRRRMDSRSNESQSSSSNSTCVDNKFSNKLPEKFELLCKFFDCLNFAMRLLRCKGVASNFSNVCSKIEVLTDRRFSYSHLAQLKFILPEAIVVKKVAIDDVPAFNFRTQDLLSKTKTLSYVKTSIEQLAPGQPMPSAKGISSNHNSEENQGFPMIKSTMTGHGPNK
Homology
[Close]
BLAST of CsGy3G038190 vs. NCBI nr
Match: XP_004151978.2 (PREDICTED: CDT1-like protein a, chloroplastic [Cucumis sativus] >XP_011651447.1 PREDICTED: CDT1-like protein a, chloroplastic [Cucumis sativus] >KGN57930.1 hypothetical protein Csa_3G394670 [Cucumis sativus])

HSP 1 Score: 307.4 bits (786), Expect = 4.5e-80
Identity = 195/309 (63.11%), Postives = 215/309 (69.58%), Query Frame = 0 

Query: 1   MAGASNKISSPSSTLPFKSNKNVSSNSTSLLKDPQSSSL------WERTRKRKKVALSIK 60
           MA ASNKISS SSTLPFKS KN+ SNS+SLLKDPQS S        ER RKR KVALSIK
Sbjct: 1   MADASNKISSRSSTLPFKSKKNLGSNSSSLLKDPQSLSSRTPEKPVERNRKR-KVALSIK 60

Query: 61  EVERAAQSVHEFNSQLLPHDLTTEGSKVVRRRMDSRSNESQSSSSNSTCVDNKFSNKLPE 120
           EV++AAQSVHE N Q L HDLTT GSK+VRR+MDS SNESQSS S  TCVDNK SNKLPE
Sbjct: 61  EVKQAAQSVHESNRQ-LHHDLTTRGSKLVRRQMDSWSNESQSSRS-KTCVDNK-SNKLPE 120

Query: 121 KFELLCKFFDCLNFAMRLLRCKGVASNFSNVCSKIEVLTDRRFSYSHLAQLKFILPEAIV 180
           KFELLCKFFDCL+ AMRLLR KGVASNFS+VC+KIEVLTDRRFSYSHLAQLKFILPEAI+
Sbjct: 121 KFELLCKFFDCLDSAMRLLRFKGVASNFSSVCTKIEVLTDRRFSYSHLAQLKFILPEAIM 180

Query: 181 VKKVA-------------------------------------------------IDDVP- 240
           +KKV                                                  IDD+P 
Sbjct: 181 LKKVVVFYGLTSCMKPDLHISFNFGVLESKEDQYMQLRKLFRTRLSEFVSSHPEIDDIPK 240

Query: 241 -----AFNFRTQDLLSKTKTLSYVKTSIEQLAPGQPMPSAKGISSNHNSEENQGFPMIKS 249
                 FNFR+ +L  +T +LS VKTSIEQLAP QP+PSA+ I SNH+SE NQGF +IKS
Sbjct: 241 DSLPNPFNFRSLNLFPETNSLSSVKTSIEQLAPEQPLPSAEDIPSNHHSENNQGFRIIKS 300

[Close]
BLAST of CsGy3G038190 vs. NCBI nr
Match: XP_011652798.1 (PREDICTED: CDT1-like protein a, chloroplastic [Cucumis sativus])

HSP 1 Score: 305.1 bits (780), Expect = 2.2e-79
Identity = 194/309 (62.78%), Postives = 214/309 (69.26%), Query Frame = 0 

Query: 1   MAGASNKISSPSSTLPFKSNKNVSSNSTSLLKDPQSSSL------WERTRKRKKVALSIK 60
           MA ASNKISS SSTLPFKS KN+ SNS+SLLKDPQS S        ER RKR KVALSIK
Sbjct: 1   MADASNKISSRSSTLPFKSKKNLGSNSSSLLKDPQSLSSRTPEKPVERNRKR-KVALSIK 60

Query: 61  EVERAAQSVHEFNSQLLPHDLTTEGSKVVRRRMDSRSNESQSSSSNSTCVDNKFSNKLPE 120
           EV++AAQSVHE N Q L HDLTT GSK+VRR+MDS S ESQSS S  TCVDNK SNKLPE
Sbjct: 61  EVKQAAQSVHESNRQ-LHHDLTTRGSKLVRRQMDSWSTESQSSRS-KTCVDNK-SNKLPE 120

Query: 121 KFELLCKFFDCLNFAMRLLRCKGVASNFSNVCSKIEVLTDRRFSYSHLAQLKFILPEAIV 180
           KFELLCKFFDCL+ AMRLLR KGVASNFS+VC+KIEVLTDRRFSYSHLAQLKFILPEAI+
Sbjct: 121 KFELLCKFFDCLDSAMRLLRFKGVASNFSSVCTKIEVLTDRRFSYSHLAQLKFILPEAIM 180

Query: 181 VKKVA-------------------------------------------------IDDVP- 240
           +KKV                                                  IDD+P 
Sbjct: 181 LKKVVVFDERTSCMKPDLHISFNFGVLESKEDQYMQLRKLFRTRLSEFVSSHPEIDDIPK 240

Query: 241 -----AFNFRTQDLLSKTKTLSYVKTSIEQLAPGQPMPSAKGISSNHNSEENQGFPMIKS 249
                 FNFR+ +L  +T +LS VKTSIEQLAP QP+PSA+ I SNH+SE NQGF +IKS
Sbjct: 241 DSLPNPFNFRSLNLFPETNSLSSVKTSIEQLAPEQPLPSAEDIPSNHHSENNQGFRIIKS 300

[Close]
BLAST of CsGy3G038190 vs. NCBI nr
Match: XP_008447443.1 (PREDICTED: CDT1-like protein a, chloroplastic [Cucumis melo])

HSP 1 Score: 297.7 bits (761), Expect = 3.6e-77
Identity = 193/309 (62.46%), Postives = 211/309 (68.28%), Query Frame = 0 

Query: 1   MAGASNKISSPSSTLPFKSNKNVSSNSTSLLKDPQSSSL------WERTRKRKKVALSIK 60
           MA AS+ ISSPSSTLPFKS KN+ SN  SLLKDPQS S        ERTRKR KVALSIK
Sbjct: 1   MADASHNISSPSSTLPFKSKKNLGSNFKSLLKDPQSLSSKTPEKPAERTRKR-KVALSIK 60

Query: 61  EVERAAQSVHEFNSQLLPHDLTTEGSKVVRRRMDSRSNESQSSSSNSTCVDNKFSNKLPE 120
           EV+RAAQSV+E N Q LPHDLTT+GSK+VRR+MDS SNES SS S  TCVD K SNKLPE
Sbjct: 61  EVKRAAQSVNESNRQ-LPHDLTTKGSKLVRRQMDSSSNESLSSRS-KTCVDKK-SNKLPE 120

Query: 121 KFELLCKFFDCLNFAMRLLRCKGVASNFSNVCSKIEVLTDRRFSYSHLAQLKFILPEAIV 180
           KFELLCKFFDCL+ AMRLLR KGVASNFSNVC+KIEVLTDRRFSY+HLAQLKFILPEAI+
Sbjct: 121 KFELLCKFFDCLDSAMRLLRFKGVASNFSNVCTKIEVLTDRRFSYNHLAQLKFILPEAIM 180

Query: 181 VKKVA-------------------------------------------------IDDVP- 240
           +KKV                                                  IDDVP 
Sbjct: 181 LKKVVVFDERTSCMKPDLHISFNFDILESKEDQYMQLRKLFRTRLSEFASSHPEIDDVPK 240

Query: 241 -----AFNFRTQDLLSKTKTLSYVKTSIEQLAPGQPMPSAKGISSNHNSEENQGFPMIKS 249
                 FNFR+Q+L  KT  LS VKTSIEQL P QPMPSA+G+ SNH+ EENQGF +IKS
Sbjct: 241 DLLPNPFNFRSQNLFPKTNPLSSVKTSIEQLGPEQPMPSAEGLLSNHHLEENQGFRIIKS 300

[Close]
BLAST of CsGy3G038190 vs. NCBI nr
Match: XP_008461526.1 (PREDICTED: CDT1-like protein b [Cucumis melo])

HSP 1 Score: 241.9 bits (616), Expect = 2.3e-60
Identity = 168/313 (53.67%), Postives = 194/313 (61.98%), Query Frame = 0 

Query: 1   MAGASNKI-SSPSSTLPFKSNKNVSSNSTSLLKDPQSSS---------LWERTRKRKKVA 60
           MA AS KI SS SSTLPFK  K + SN  SLL+D QS S         L  R+R R KVA
Sbjct: 1   MADASKKISSSSSSTLPFKLKKPLCSNFKSLLEDSQSLSSKTPEKPAELSTRSRNR-KVA 60

Query: 61  LSIKEVERAAQSVHEFNSQLLPHDLTTEGSKVVRRRMDSRSNESQSSSSNSTCVDNKFSN 120
           LSIKEV++AA+SV E N Q LP DL TE  K VRR++DS SNESQS       V+NK S 
Sbjct: 61  LSIKEVKQAAKSVRESNRQ-LPLDLATEERKSVRRQIDSWSNESQS-------VENK-SR 120

Query: 121 KLPEKFELLCKFFDCLNFAMRLLRCKGVASNFSNVCSKIEVLTDRRFSYSHLAQLKFILP 180
           KLPEKFE+LCKFF  L+ AMRLLRCKGVASNFSNVC K+E LTDRRFSY HLAQ KFILP
Sbjct: 121 KLPEKFEMLCKFFYSLDSAMRLLRCKGVASNFSNVCPKVEALTDRRFSYGHLAQFKFILP 180

Query: 181 EAIVVKKVAI-------------------------------------------------D 240
           EAIV+KKV +                                                  
Sbjct: 181 EAIVLKKVVVYDEQTCCMKPDLHISFNFAVLENKEDQYMQLRKLFRARLSEFVSSYPETH 240

Query: 241 DVP------AFNFRTQDLLSKTKTLSYVKTSIEQLAPGQPMPSAKGISSNHNSEENQGFP 249
           DVP       FNFR+QDL++K+ +LS +KTSIEQLAP QPMPS +GI  NH+SEENQGF 
Sbjct: 241 DVPKDLLPNPFNFRSQDLVAKSNSLSSIKTSIEQLAPEQPMPSIEGICFNHHSEENQGFR 300

[Close]
BLAST of CsGy3G038190 vs. NCBI nr
Match: XP_022967387.1 (CDT1-like protein b [Cucurbita maxima])

HSP 1 Score: 226.5 bits (576), Expect = 1.0e-55
Identity = 166/314 (52.87%), Postives = 183/314 (58.28%), Query Frame = 0 

Query: 4   ASNKISSPSSTLPFKSNKNVSSNSTSLLKDPQSSS---------LWERTRKRKKVALSIK 63
           AS KISSPSS+LPFKS K + SNS SLL+D QS S         L  RTR R KVALSIK
Sbjct: 3   ASEKISSPSSSLPFKSKKTLRSNSKSLLQDQQSLSSKTPEKSAELSTRTRSR-KVALSIK 62

Query: 64  EVERAAQSVHEFNSQLLPHDLTTEGSKVVRRRMDSRSNESQSSSSNSTCVDNKFSNKLPE 123
           EV RAA+SV E N Q LP DLTTEGSK VRR++DS SNES SS    T VD     KLPE
Sbjct: 63  EVRRAAESVRESNRQ-LPRDLTTEGSKSVRRQIDSWSNESPSSRF-KTSVDK--YKKLPE 122

Query: 124 KFELLCKFFDCLNFAMRLLRCKGVASNFSNVCSKIEVLTDRRFSYSHLAQLKFILPEAIV 183
           KFE L KFFD L+  MRLLR KGVASNFSNVC KIEVLTDRRFSY HLAQ+KFI+PEAI 
Sbjct: 123 KFEFLSKFFDSLDSVMRLLRFKGVASNFSNVCPKIEVLTDRRFSYGHLAQMKFIVPEAIE 182

Query: 184 VKKV------------------------------------------------------AI 243
           +KKV                                                       I
Sbjct: 183 LKKVLIFDERTSCMKPDLHISFNFGVLDNKDDVETGNQYMQLRKLFKARLSEFASSHPEI 242

Query: 244 DDVP------AFNFRTQDLLSKTKTLSYVKTSIEQLAPGQPMPSAKGISSNHNSEENQGF 249
           DDVP       FN  +QDL  KT  LS VK  IEQLA  QP  S+  ++ +H S ENQGF
Sbjct: 243 DDVPKDLLPKPFNCSSQDLFPKTNFLSSVKAPIEQLAAEQPAISSTSVAEDH-SNENQGF 302

[Close]
BLAST of CsGy3G038190 vs. TAIR10
Match: AT3G54710.1 (homolog of yeast CDT1 B homolog of yeast CDT1 B)

HSP 1 Score: 82.4 bits (202), Expect = 4.3e-16
Identity = 39/68 (57.35%), Postives = 55/68 (80.88%), Query Frame = 0 

Query: 111 KLPEKFELLCKFFDCLNFAMRLLRCKGVASNFSNVCSKIEVLTDRRFSYSHLAQLKFILP 170
           KLPE+FE+L +FF+ L+ A+RLL+ KG ++ ++N+C KIE LT+R FSY HLAQ+K I P
Sbjct: 45  KLPERFEILEEFFNGLDTAIRLLKLKGSSTTYANICPKIEYLTNRIFSYDHLAQMKHIYP 104

Query: 171 EAIVVKKV 179
           EAI +K+V
Sbjct: 105 EAIELKRV 112

[Close]
BLAST of CsGy3G038190 vs. TAIR10
Match: AT2G31270.1 (homolog of yeast CDT1 A)

HSP 1 Score: 73.6 bits (179), Expect = 2.0e-13
Identity = 66/192 (34.38%), Postives = 91/192 (47.40%), Query Frame = 0 

Query: 8   ISSPSS--TLPFKSNKNV---SSNSTSLLKDPQSSS------------LWERTRKRKKVA 67
           +S+P S  ++PFKS K +   S +S S   +P  SS            +  R+R R  VA
Sbjct: 1   MSTPGSSRSIPFKSKKRLVMDSPSSKSQTGNPNPSSVALPTPEKPLENMLSRSRNR-SVA 60

Query: 68  LSIKEVERAAQSVHEFNSQLLPHDLTTEGSKVVRRRMDSRSNESQSSSSNSTCVDNKFSN 127
           LS+KE+ +AA                                    +             
Sbjct: 61  LSVKEIRQAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAE----------KE 120

Query: 128 KLPEKFELLCKFFDCLNFAMRLLRCKGVASNFSNVCSKIEVLTDRRFSYSHLAQLKFILP 183
           KLPEK+E L KFF+ L+ +M L + +G    FSN+  +IE LT+RRF YSHLAQ+K ILP
Sbjct: 121 KLPEKYENLGKFFEALDNSMLLSKLRGSKPTFSNISKQIEHLTERRFCYSHLAQIKHILP 180

[Close]
BLAST of CsGy3G038190 vs. Swiss-Prot
Match: sp|Q9M1S9|CDT1B_ARATH (CDT1-like protein b OS=Arabidopsis thaliana OX=3702 GN=CDT1B PE=1 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 7.7e-15
Identity = 39/68 (57.35%), Postives = 55/68 (80.88%), Query Frame = 0 

Query: 111 KLPEKFELLCKFFDCLNFAMRLLRCKGVASNFSNVCSKIEVLTDRRFSYSHLAQLKFILP 170
           KLPE+FE+L +FF+ L+ A+RLL+ KG ++ ++N+C KIE LT+R FSY HLAQ+K I P
Sbjct: 45  KLPERFEILEEFFNGLDTAIRLLKLKGSSTTYANICPKIEYLTNRIFSYDHLAQMKHIYP 104

Query: 171 EAIVVKKV 179
           EAI +K+V
Sbjct: 105 EAIELKRV 112

[Close]
BLAST of CsGy3G038190 vs. Swiss-Prot
Match: sp|Q9SJW9|CDT1A_ARATH (CDT1-like protein a, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CDT1A PE=1 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 3.6e-12
Identity = 66/192 (34.38%), Postives = 91/192 (47.40%), Query Frame = 0 

Query: 8   ISSPSS--TLPFKSNKNV---SSNSTSLLKDPQSSS------------LWERTRKRKKVA 67
           +S+P S  ++PFKS K +   S +S S   +P  SS            +  R+R R  VA
Sbjct: 1   MSTPGSSRSIPFKSKKRLVMDSPSSKSQTGNPNPSSVALPTPEKPLENMLSRSRNR-SVA 60

Query: 68  LSIKEVERAAQSVHEFNSQLLPHDLTTEGSKVVRRRMDSRSNESQSSSSNSTCVDNKFSN 127
           LS+KE+ +AA                                    +             
Sbjct: 61  LSVKEIRQAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAE----------KE 120

Query: 128 KLPEKFELLCKFFDCLNFAMRLLRCKGVASNFSNVCSKIEVLTDRRFSYSHLAQLKFILP 183
           KLPEK+E L KFF+ L+ +M L + +G    FSN+  +IE LT+RRF YSHLAQ+K ILP
Sbjct: 121 KLPEKYENLGKFFEALDNSMLLSKLRGSKPTFSNISKQIEHLTERRFCYSHLAQIKHILP 180

[Close]
BLAST of CsGy3G038190 vs. TrEMBL
Match: tr|A0A0A0L7I7|A0A0A0L7I7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G394670 PE=4 SV=1)

HSP 1 Score: 307.4 bits (786), Expect = 3.0e-80
Identity = 195/309 (63.11%), Postives = 215/309 (69.58%), Query Frame = 0 

Query: 1   MAGASNKISSPSSTLPFKSNKNVSSNSTSLLKDPQSSSL------WERTRKRKKVALSIK 60
           MA ASNKISS SSTLPFKS KN+ SNS+SLLKDPQS S        ER RKR KVALSIK
Sbjct: 1   MADASNKISSRSSTLPFKSKKNLGSNSSSLLKDPQSLSSRTPEKPVERNRKR-KVALSIK 60

Query: 61  EVERAAQSVHEFNSQLLPHDLTTEGSKVVRRRMDSRSNESQSSSSNSTCVDNKFSNKLPE 120
           EV++AAQSVHE N Q L HDLTT GSK+VRR+MDS SNESQSS S  TCVDNK SNKLPE
Sbjct: 61  EVKQAAQSVHESNRQ-LHHDLTTRGSKLVRRQMDSWSNESQSSRS-KTCVDNK-SNKLPE 120

Query: 121 KFELLCKFFDCLNFAMRLLRCKGVASNFSNVCSKIEVLTDRRFSYSHLAQLKFILPEAIV 180
           KFELLCKFFDCL+ AMRLLR KGVASNFS+VC+KIEVLTDRRFSYSHLAQLKFILPEAI+
Sbjct: 121 KFELLCKFFDCLDSAMRLLRFKGVASNFSSVCTKIEVLTDRRFSYSHLAQLKFILPEAIM 180

Query: 181 VKKVA-------------------------------------------------IDDVP- 240
           +KKV                                                  IDD+P 
Sbjct: 181 LKKVVVFYGLTSCMKPDLHISFNFGVLESKEDQYMQLRKLFRTRLSEFVSSHPEIDDIPK 240

Query: 241 -----AFNFRTQDLLSKTKTLSYVKTSIEQLAPGQPMPSAKGISSNHNSEENQGFPMIKS 249
                 FNFR+ +L  +T +LS VKTSIEQLAP QP+PSA+ I SNH+SE NQGF +IKS
Sbjct: 241 DSLPNPFNFRSLNLFPETNSLSSVKTSIEQLAPEQPLPSAEDIPSNHHSENNQGFRIIKS 300

[Close]
BLAST of CsGy3G038190 vs. TrEMBL
Match: tr|A0A1S3BGW9|A0A1S3BGW9_CUCME (CDT1-like protein a, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103489888 PE=4 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 2.4e-77
Identity = 193/309 (62.46%), Postives = 211/309 (68.28%), Query Frame = 0 

Query: 1   MAGASNKISSPSSTLPFKSNKNVSSNSTSLLKDPQSSSL------WERTRKRKKVALSIK 60
           MA AS+ ISSPSSTLPFKS KN+ SN  SLLKDPQS S        ERTRKR KVALSIK
Sbjct: 1   MADASHNISSPSSTLPFKSKKNLGSNFKSLLKDPQSLSSKTPEKPAERTRKR-KVALSIK 60

Query: 61  EVERAAQSVHEFNSQLLPHDLTTEGSKVVRRRMDSRSNESQSSSSNSTCVDNKFSNKLPE 120
           EV+RAAQSV+E N Q LPHDLTT+GSK+VRR+MDS SNES SS S  TCVD K SNKLPE
Sbjct: 61  EVKRAAQSVNESNRQ-LPHDLTTKGSKLVRRQMDSSSNESLSSRS-KTCVDKK-SNKLPE 120

Query: 121 KFELLCKFFDCLNFAMRLLRCKGVASNFSNVCSKIEVLTDRRFSYSHLAQLKFILPEAIV 180
           KFELLCKFFDCL+ AMRLLR KGVASNFSNVC+KIEVLTDRRFSY+HLAQLKFILPEAI+
Sbjct: 121 KFELLCKFFDCLDSAMRLLRFKGVASNFSNVCTKIEVLTDRRFSYNHLAQLKFILPEAIM 180

Query: 181 VKKVA-------------------------------------------------IDDVP- 240
           +KKV                                                  IDDVP 
Sbjct: 181 LKKVVVFDERTSCMKPDLHISFNFDILESKEDQYMQLRKLFRTRLSEFASSHPEIDDVPK 240

Query: 241 -----AFNFRTQDLLSKTKTLSYVKTSIEQLAPGQPMPSAKGISSNHNSEENQGFPMIKS 249
                 FNFR+Q+L  KT  LS VKTSIEQL P QPMPSA+G+ SNH+ EENQGF +IKS
Sbjct: 241 DLLPNPFNFRSQNLFPKTNPLSSVKTSIEQLGPEQPMPSAEGLLSNHHLEENQGFRIIKS 300

[Close]
BLAST of CsGy3G038190 vs. TrEMBL
Match: tr|A0A1S3CEP6|A0A1S3CEP6_CUCME (CDT1-like protein b OS=Cucumis melo OX=3656 GN=LOC103500097 PE=4 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 1.5e-60
Identity = 168/313 (53.67%), Postives = 194/313 (61.98%), Query Frame = 0 

Query: 1   MAGASNKI-SSPSSTLPFKSNKNVSSNSTSLLKDPQSSS---------LWERTRKRKKVA 60
           MA AS KI SS SSTLPFK  K + SN  SLL+D QS S         L  R+R R KVA
Sbjct: 1   MADASKKISSSSSSTLPFKLKKPLCSNFKSLLEDSQSLSSKTPEKPAELSTRSRNR-KVA 60

Query: 61  LSIKEVERAAQSVHEFNSQLLPHDLTTEGSKVVRRRMDSRSNESQSSSSNSTCVDNKFSN 120
           LSIKEV++AA+SV E N Q LP DL TE  K VRR++DS SNESQS       V+NK S 
Sbjct: 61  LSIKEVKQAAKSVRESNRQ-LPLDLATEERKSVRRQIDSWSNESQS-------VENK-SR 120

Query: 121 KLPEKFELLCKFFDCLNFAMRLLRCKGVASNFSNVCSKIEVLTDRRFSYSHLAQLKFILP 180
           KLPEKFE+LCKFF  L+ AMRLLRCKGVASNFSNVC K+E LTDRRFSY HLAQ KFILP
Sbjct: 121 KLPEKFEMLCKFFYSLDSAMRLLRCKGVASNFSNVCPKVEALTDRRFSYGHLAQFKFILP 180

Query: 181 EAIVVKKVAI-------------------------------------------------D 240
           EAIV+KKV +                                                  
Sbjct: 181 EAIVLKKVVVYDEQTCCMKPDLHISFNFAVLENKEDQYMQLRKLFRARLSEFVSSYPETH 240

Query: 241 DVP------AFNFRTQDLLSKTKTLSYVKTSIEQLAPGQPMPSAKGISSNHNSEENQGFP 249
           DVP       FNFR+QDL++K+ +LS +KTSIEQLAP QPMPS +GI  NH+SEENQGF 
Sbjct: 241 DVPKDLLPNPFNFRSQDLVAKSNSLSSIKTSIEQLAPEQPMPSIEGICFNHHSEENQGFR 300

[Close]
BLAST of CsGy3G038190 vs. TrEMBL
Match: tr|A0A1S3C211|A0A1S3C211_CUCME (CDT1-like protein b OS=Cucumis melo OX=3656 GN=LOC103495953 PE=4 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 1.1e-50
Identity = 154/316 (48.73%), Postives = 176/316 (55.70%), Query Frame = 0 

Query: 1   MAGASNKI-----SSPSSTLPFKSNKNVSSNSTSLLKDPQSSS--------LWERTRKRK 60
           MA AS KI           LPFKS K + SNS SLL+DPQS S                 
Sbjct: 1   MADASKKIXXXXXXXXXXXLPFKSKKPLRSNSKSLLEDPQSLSSKTXXXXXXXXXXXXXX 60

Query: 61  KVALSIKEVERAAQSVHEFNSQLLPHDLTTEGSKVVRRRMDSRSNESQSSSSNSTCVDNK 120
                 KEV+RAA SV + N Q LP  L  E SK VRR++D  SNESQS       VDNK
Sbjct: 61  XXXXXXKEVKRAALSVTQSNRQ-LPLHLAIEESKSVRRQIDLWSNESQS-------VDNK 120

Query: 121 FSNKLPEKFELLCKFFDCLNFAMRLLRCKGVASNFSNVCSKIEVLTDRRFSYSHLAQLKF 180
            S K PEKFE+LCKFF  L+ AMRLLR KGVASNFSNVC KIE LTDRRF+Y HLAQ KF
Sbjct: 121 -SKKFPEKFEMLCKFFYSLDSAMRLLRFKGVASNFSNVCPKIEALTDRRFTYGHLAQFKF 180

Query: 181 ILPEAIVVKKVAI----------------------------------------------- 240
           IL EAIV+KKV +                                               
Sbjct: 181 ILREAIVLKKVLVYDERTCCMKPDLHISFNFGVPENQEDQYMQLRKLFRARLSEFVSSYP 240

Query: 241 --DDVP------AFNFRTQDLLSKTKTLSYVKTSIEQLAPGQPMPSAKGISSNHNSEENQ 249
             DDVP       FNFR+QDL++K+ +LS +KTSIEQLAP QPMPS +GIS NH+SEE+Q
Sbjct: 241 ETDDVPKDLLPNPFNFRSQDLVAKSNSLSSIKTSIEQLAPEQPMPSIEGISFNHHSEEHQ 300

[Close]
BLAST of CsGy3G038190 vs. TrEMBL
Match: tr|A0A0A0LD77|A0A0A0LD77_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G842990 PE=4 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 5.9e-44
Identity = 108/121 (89.26%), Postives = 111/121 (91.74%), Query Frame = 0 

Query: 1   MAGASNKISSPSSTLPFKSNKNVSSNSTSLLKDPQSSSL------WERTRKRKKVALSIK 60
           MAGASNKISSPSSTLPFKSNKNVSSNSTSLLKDPQS S        ERTRKRKKVALSI+
Sbjct: 1   MAGASNKISSPSSTLPFKSNKNVSSNSTSLLKDPQSLSSKTPEKPAERTRKRKKVALSIE 60

Query: 61  EVERAAQSVHEFNSQLLPHDLTTEGSKVVRRRMDSRSNESQSSSSNSTCVDNKFSNKLPE 116
           EVERAAQSVHE NSQLLPHDLTTEGSKVVRRRMDSRSNESQSSSS+STCVDNK+SNKLPE
Sbjct: 61  EVERAAQSVHESNSQLLPHDLTTEGSKVVRRRMDSRSNESQSSSSDSTCVDNKYSNKLPE 120

The following BLAST results are available for this feature:
BLAST of CsGy3G038190 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004151978.24.5e-8063.11PREDICTED: CDT1-like protein a, chloroplastic [Cucumis sativus] >XP_011651447.1 ... [more]
XP_011652798.12.2e-7962.78PREDICTED: CDT1-like protein a, chloroplastic [Cucumis sativus][more]
XP_008447443.13.6e-7762.46PREDICTED: CDT1-like protein a, chloroplastic [Cucumis melo][more]
XP_008461526.12.3e-6053.67PREDICTED: CDT1-like protein b [Cucumis melo][more]
XP_022967387.11.0e-5552.87CDT1-like protein b [Cucurbita maxima][more]
BLAST of CsGy3G038190 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G54710.14.3e-1657.35homolog of yeast CDT1 B homolog of yeast CDT1 B[more]
AT2G31270.12.0e-1334.38homolog of yeast CDT1 A[more]
BLAST of CsGy3G038190 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9M1S9|CDT1B_ARATH7.7e-1557.35CDT1-like protein b OS=Arabidopsis thaliana OX=3702 GN=CDT1B PE=1 SV=1[more]
sp|Q9SJW9|CDT1A_ARATH3.6e-1234.38CDT1-like protein a, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CDT1A PE=1... [more]
BLAST of CsGy3G038190 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L7I7|A0A0A0L7I7_CUCSA3.0e-8063.11Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G394670 PE=4 SV=1[more]
tr|A0A1S3BGW9|A0A1S3BGW9_CUCME2.4e-7762.46CDT1-like protein a, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103489888 PE=4 ... [more]
tr|A0A1S3CEP6|A0A1S3CEP6_CUCME1.5e-6053.67CDT1-like protein b OS=Cucumis melo OX=3656 GN=LOC103500097 PE=4 SV=1[more]
tr|A0A1S3C211|A0A1S3C211_CUCME1.1e-5048.73CDT1-like protein b OS=Cucumis melo OX=3656 GN=LOC103495953 PE=4 SV=1[more]
tr|A0A0A0LD77|A0A0A0LD77_CUCSA5.9e-4489.26Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G842990 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036390WH_DNA-bd_sf
IPR014939CDT1_Gemini-bd-like
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy3G038190.1CsGy3G038190.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR014939CDT1 Geminin-binding domain-likeSMARTSM01075CDT1_2coord: 112..243
e-value: 0.0049
score: 2.2
IPR014939CDT1 Geminin-binding domain-likePFAMPF08839CDT1coord: 112..176
e-value: 7.0E-12
score: 45.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 212..248
NoneNo IPR availablePANTHERPTHR28637FAMILY NOT NAMEDcoord: 20..180
NoneNo IPR availablePANTHERPTHR28637:SF5CDT1-LIKE PROTEIN Bcoord: 20..180
IPR036390Winged helix DNA-binding domain superfamilySUPERFAMILYSSF46785"Winged helix" DNA-binding domaincoord: 105..185

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy3G038190CSPI03G40710Wild cucumber (PI 183967)cgybcpiB111
CsGy3G038190CsaV3_3G043220Cucumber (Chinese Long) v3cgybcucB117
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy3G038190Cucurbita maxima (Rimu)cgybcmaB320
CsGy3G038190Cucurbita moschata (Rifu)cgybcmoB286
CsGy3G038190Cucumber (Chinese Long) v2cgybcuB110
CsGy3G038190Bottle gourd (USVL1VR-Ls)cgyblsiB171
CsGy3G038190Melon (DHL92) v3.5.1cgybmeB184
CsGy3G038190Melon (DHL92) v3.6.1cgybmedB185
CsGy3G038190Watermelon (Charleston Gray)cgybwcgB179
CsGy3G038190Watermelon (97103) v1cgybwmB187
CsGy3G038190Watermelon (97103) v2cgybwmbB178
CsGy3G038190Wax gourdcgybwgoB226