CsaV3_3G039490 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G039490
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
Descriptionacanthoscurrin-2-like
Locationchr3 : 32475513 .. 32476828 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAGTTAAAAGTATACGAGCGAATAAAAGATTTTAAAAGTACACAAACAAATGAACCAAAATGGAAAGTAAACATACTAAAGTAGTATATATAATATAAACCTACTGCTAATGAATTCAATACTAAATCGAATATGAAGAGTACTATAGGTAAAAAGAACACTAAAAAAATCTGGAAAGAAAGCTTACACGTCTAAGATTGAGATATTTCAAAGGGATATTGTGAATATGTTAAAGAAGATCACTAGATTTCATAAAGGGAACAAGAATGACAACAACCAAATCACAACTTATGAGAGAGAGTTAAGACATTCATGAGGTTCATGTTACTCAAAACCTAAATTGATCACAATGGATCCTATGCCATAGCATTAACTAAAGTTTGCTACCCCTATTCAATTTCCCCTCAACAGTCCACCGTCTTCTATTCCCTTTAAAAAGACTCACAAATTTGATATCCTTTCACCACACACAAAAATTAAACAGCCCTTCAAATGGCAAATTACAAGCTTAATTTGATGTTGGTTATGGCAATGGCTATGGCTGCATTTGCGTTCCATGTTACTGCAAGAACTGTCCCAAATGATCAGGCTGCAAAAGGGCTCAATGACCAAAAGAACTTCCTCAACTATGGTGGTGTTGGTGGTTTCTCTGGCATTGGTGACAGTGGACTCCCCTTCGGAGGCGGTATCGGCGGGGGAGGGCTCGGAGGAGGTGGTGGCTTAGGCGGGCTTGGTGGTGGCATTGGTGGGTTCGGTGGGGTTGGCATTGGTGGCATTGGTGGCGGAGTTGGTGGTGGAGTGATAGGGGGAATTGGAGGGATTGGTGGTGGTGGTGGACTCGTTAAACTTCCTTAAACTATTAATCTAAGAGTGGAGGATTCGTTTACAAAGTTTGGTGTGTTTCTTATGTGTGTTTTATTGTAATGTTTTAATTTGGAGTTTCTTTAGGGTTTATATAAGAAAAAGATAAGTAATTTGTGTGTTTGGTTTGCAATGTTAGTTTGATCACTACATCTTGTTGATGTAAGTTTGATGACAATTGCTCTTGTTTCTTTTAAATGTCTAATTGAAAATGGTGGATGGCTACCTTTACTCATAAAGGGAAATGCATATGTGTGTGTGGGTTTATGTTAGAATGATGTTGAGTTAAAGGAAAGAAAAGATAAAGATTGGGCCTCGTTTTGGCATCAAGAAAGTAGCACACGTACTACTAGCAACTAATCTTAAATGATGTTAATTGATCAAAATCAAAATGATTTTATGTATTTAATTTTGTTTATAATAACATCTTATTTCAAATATATGTGATTTTCTC

mRNA sequence

ATGGCAAATTACAAGCTTAATTTGATGTTGGTTATGGCAATGGCTATGGCTGCATTTGCGTTCCATGTTACTGCAAGAACTGTCCCAAATGATCAGGCTGCAAAAGGGCTCAATGACCAAAAGAACTTCCTCAACTATGGTGGTGTTGGTGGTTTCTCTGGCATTGGTGACAGTGGACTCCCCTTCGGAGGCGGTATCGGCGGGGGAGGGCTCGGAGGAGGTGGTGGCTTAGGCGGGCTTGGTGGTGGCATTGGTGGGTTCGGTGGGGTTGGCATTGGTGGCATTGGTGGCGGAGTTGGTGGTGGAGTGATAGGGGGAATTGGAGGGATTGGTGGTGGTGGTGGACTCGTTAAACTTCCTTAA

Coding sequence (CDS)

ATGGCAAATTACAAGCTTAATTTGATGTTGGTTATGGCAATGGCTATGGCTGCATTTGCGTTCCATGTTACTGCAAGAACTGTCCCAAATGATCAGGCTGCAAAAGGGCTCAATGACCAAAAGAACTTCCTCAACTATGGTGGTGTTGGTGGTTTCTCTGGCATTGGTGACAGTGGACTCCCCTTCGGAGGCGGTATCGGCGGGGGAGGGCTCGGAGGAGGTGGTGGCTTAGGCGGGCTTGGTGGTGGCATTGGTGGGTTCGGTGGGGTTGGCATTGGTGGCATTGGTGGCGGAGTTGGTGGTGGAGTGATAGGGGGAATTGGAGGGATTGGTGGTGGTGGTGGACTCGTTAAACTTCCTTAA

Protein sequence

MANYKLNLMLVMAMAMAAFAFHVTARTVPNDQAAKGLNDQKNFLNYGGVGGFSGIGDSGLPFGGGIGGGGLGGGGGLGGLGGGIGGFGGVGIGGIGGGVGGGVIGGIGGIGGGGGLVKLP
Homology
[Close]
BLAST of CsaV3_3G039490 vs. NCBI nr
Match: XP_011652144.1 (PREDICTED: glycine-rich cell wall structural protein 1-like [Cucumis sativus] >KGN59369.1 hypothetical protein Csa_3G814360 [Cucumis sativus])

HSP 1 Score: 75.5 bits (184), Expect = 1.4e-10
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 0 

Query: 1  MANYKLNLXXXXXXXXXXXXXHVTARTVPNDQAAKGLNDQKNFLNYGGVG 51
          MANYKLNLXXXXXXXXXXXXXHVTARTVPNDQAAKGLNDQKNFLNYGGVG
Sbjct: 1  MANYKLNLXXXXXXXXXXXXXHVTARTVPNDQAAKGLNDQKNFLNYGGVG 50

[Close]
BLAST of CsaV3_3G039490 vs. NCBI nr
Match: XP_008447334.1 (PREDICTED: acanthoscurrin-2-like [Cucumis melo])

HSP 1 Score: 59.7 bits (143), Expect = 8.0e-06
Identity = 33/50 (66.00%), Postives = 34/50 (68.00%), Query Frame = 0 

Query: 1  MANYKLNLXXXXXXXXXXXXXHVTARTVPNDQAAKGLNDQKNFLNYGGVG 51
          MANYKLNL             HV ART PN +AAKGLNDQKNFLNYGGVG
Sbjct: 1  MANYKLNL--MLVMAMAALALHVAARTAPN-EAAKGLNDQKNFLNYGGVG 47

[Close]
BLAST of CsaV3_3G039490 vs. TrEMBL
Match: tr|A0A0A0LEM4|A0A0A0LEM4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G814360 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 9.3e-11
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 0 

Query: 1  MANYKLNLXXXXXXXXXXXXXHVTARTVPNDQAAKGLNDQKNFLNYGGVG 51
          MANYKLNLXXXXXXXXXXXXXHVTARTVPNDQAAKGLNDQKNFLNYGGVG
Sbjct: 1  MANYKLNLXXXXXXXXXXXXXHVTARTVPNDQAAKGLNDQKNFLNYGGVG 50

[Close]
BLAST of CsaV3_3G039490 vs. TrEMBL
Match: tr|A0A1S3BI24|A0A1S3BI24_CUCME (acanthoscurrin-2-like OS=Cucumis melo OX=3656 GN=LOC103489805 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 5.3e-06
Identity = 33/50 (66.00%), Postives = 34/50 (68.00%), Query Frame = 0 

Query: 1  MANYKLNLXXXXXXXXXXXXXHVTARTVPNDQAAKGLNDQKNFLNYGGVG 51
          MANYKLNL             HV ART PN +AAKGLNDQKNFLNYGGVG
Sbjct: 1  MANYKLNL--MLVMAMAALALHVAARTAPN-EAAKGLNDQKNFLNYGGVG 47

The following BLAST results are available for this feature:
BLAST of CsaV3_3G039490 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011652144.11.4e-10100.00PREDICTED: glycine-rich cell wall structural protein 1-like [Cucumis sativus] >K... [more]
XP_008447334.18.0e-0666.00PREDICTED: acanthoscurrin-2-like [Cucumis melo][more]
BLAST of CsaV3_3G039490 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G039490 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G039490 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LEM4|A0A0A0LEM4_CUCSA9.3e-11100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G814360 PE=4 SV=1[more]
tr|A0A1S3BI24|A0A1S3BI24_CUCME5.3e-0666.00acanthoscurrin-2-like OS=Cucumis melo OX=3656 GN=LOC103489805 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G039490.1CsaV3_3G039490.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34463:SF1GLYCINE-RICH PROTEIN LIKEcoord: 1..115
NoneNo IPR availablePANTHERPTHR34463FAMILY NOT NAMEDcoord: 1..115

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_3G039490CSPI03G37160Wild cucumber (PI 183967)cpicucB145
CsaV3_3G039490Cucsa.337150Cucumber (Gy14) v1cgycucB523
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_3G039490Silver-seed gourdcarcucB0178
CsaV3_3G039490Silver-seed gourdcarcucB0279
CsaV3_3G039490Cucumber (Gy14) v2cgybcucB117
CsaV3_3G039490Cucurbita maxima (Rimu)cmacucB0279
CsaV3_3G039490Cucurbita maxima (Rimu)cmacucB0976
CsaV3_3G039490Cucurbita moschata (Rifu)cmocucB0270
CsaV3_3G039490Cucurbita moschata (Rifu)cmocucB0962
CsaV3_3G039490Cucurbita pepo (Zucchini)cpecucB0747
CsaV3_3G039490Cucurbita pepo (Zucchini)cpecucB1060
CsaV3_3G039490Bottle gourd (USVL1VR-Ls)cuclsiB182
CsaV3_3G039490Bottle gourd (USVL1VR-Ls)cuclsiB203
CsaV3_3G039490Melon (DHL92) v3.5.1cucmeB218
CsaV3_3G039490Melon (DHL92) v3.6.1cucmedB211
CsaV3_3G039490Watermelon (Charleston Gray)cucwcgB199
CsaV3_3G039490Watermelon (97103) v1cucwmB208
CsaV3_3G039490Watermelon (97103) v2cucwmbB187
CsaV3_3G039490Wax gourdcucwgoB227