CSPI03G37160 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI03G37160
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Glycine-rich family protein
Location	Chr3 : 32242411 .. 32243242 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCTATGCCATAGCATTAACTAAAGTTTGCTACCCCTATTCAATTTCCCCTCAACAGTCCACCGTCTTCTATTCCCTTTAAAAAGACTCACAAATTTGATATCCTTTCACCACACACAAAAATTAAACAGCCCTTCAAATGGCAAATTACAAGCTTAATTTGATGTTGGTTATGGCAATGGCTATGGCTGCATTTGCGCTCCATGTTACTGCAAGAACTGTCCCAAATGATCAGGCTGCAAAAGGGCTCAATGACCAAAAGAACTTCCTCAACTATGGTGGTGTTGGTGGTTTCTCTGGCATTGGTGACAGTGGACTCCCCTTCGGAGGCGGTATCGGCGGGGGAGGGCTGGGAGGAGGTGGTGGCTTAGGCGGGCTTGGTGGTGGCATTGGTGGGTTCGGTGGGGTTGGCATTGGTGGCATTGGTGGCGGAGTTGGTGGTGGAGTGATAGGGGGAATTGGAGGGATTGGTGGTGGTGGTGGACTCGTTAAACTTCCTTAAACTATTAATCTAAGAGTGGAGGATTCGTTTACAAAGTTTGGTGTGTTTCTTATGTGTGTTTTATTGTAATGTTTTAATTTGGAGTTTCTTTAGGGTTTATATAAGAAAAAGATAAGTAATTTGTGTGTTTGGTTTGCAATGTTAGTTTGATCACTACATCTTGTTGATGTAAGTTTGATGACAATTGCTCTTGTTTCTTTTAAATGTCTAATTGAAAATGGTGGATGGCTACCTTTACTCATAAAGGGAAATGCATATGTGTGTGTGGGTTTATGTTAGAATGATGTTGAGTTAAAGGAAAGAAAAGATAAAGATTGGGCCTCGTTTTGGCA

mRNA sequence

ATGGCAAATTACAAGCTTAATTTGATGTTGGTTATGGCAATGGCTATGGCTGCATTTGCGCTCCATGTTACTGCAAGAACTGTCCCAAATGATCAGGCTGCAAAAGGGCTCAATGACCAAAAGAACTTCCTCAACTATGGTGGTGTTGGTGGTTTCTCTGGCATTGGTGACAGTGGACTCCCCTTCGGAGGCGGTATCGGCGGGGGAGGGCTGGGAGGAGGTGGTGGCTTAGGCGGGCTTGGTGGTGGCATTGGTGGGTTCGGTGGGGTTGGCATTGGTGGCATTGGTGGCGGAGTTGGTGGTGGAGTGATAGGGGGAATTGGAGGGATTGGTGGTGGTGGTGGACTCGTTAAACTTCCTTAA

Coding sequence (CDS)

ATGGCAAATTACAAGCTTAATTTGATGTTGGTTATGGCAATGGCTATGGCTGCATTTGCGCTCCATGTTACTGCAAGAACTGTCCCAAATGATCAGGCTGCAAAAGGGCTCAATGACCAAAAGAACTTCCTCAACTATGGTGGTGTTGGTGGTTTCTCTGGCATTGGTGACAGTGGACTCCCCTTCGGAGGCGGTATCGGCGGGGGAGGGCTGGGAGGAGGTGGTGGCTTAGGCGGGCTTGGTGGTGGCATTGGTGGGTTCGGTGGGGTTGGCATTGGTGGCATTGGTGGCGGAGTTGGTGGTGGAGTGATAGGGGGAATTGGAGGGATTGGTGGTGGTGGTGGACTCGTTAAACTTCCTTAA

Homology

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BLAST of CSPI03G37160 vs. TrEMBL
Match: A0A0A0LEM4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G814360 PE=4 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 4.5e-44
Identity = 119/120 (99.17%), Postives = 119/120 (99.17%), Query Frame = 1


Query: 1   MANYKLNLMLVMAMAMAAFALHVTARTVPNDQAAKGLNDQKNFLNYGGVGGFSGIGDSGL 60
           MANYKLNLMLVMAMAMAAFA HVTARTVPNDQAAKGLNDQKNFLNYGGVGGFSGIGDSGL
Sbjct: 1   MANYKLNLMLVMAMAMAAFAFHVTARTVPNDQAAKGLNDQKNFLNYGGVGGFSGIGDSGL 60

Query: 61  PFGGGIGGGGLGGGGGLGGLGGGIGGFGGVGIGGIGGGVGGGVIGGIGGIGGGGGLVKLP 120
           PFGGGIGGGGLGGGGGLGGLGGGIGGFGGVGIGGIGGGVGGGVIGGIGGIGGGGGLVKLP
Sbjct: 61  PFGGGIGGGGLGGGGGLGGLGGGIGGFGGVGIGGIGGGVGGGVIGGIGGIGGGGGLVKLP 120

[Close]

BLAST of CSPI03G37160 vs. TrEMBL
Match: B9GR90_POPTR (Glycine-rich family protein OS=Populus trichocarpa GN=POPTR_0002s25370g PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.5e-10
Identity = 79/140 (56.43%), Postives = 97/140 (69.29%), Query Frame = 1


Query: 1   MANYKLNLMLVMAMAMAAFALHVTARTVPNDQ-----------AAKGLNDQKNFLNYGGV 60
           MA   + ++LV+A+A    A+H +AR VP ++           +  GL DQKNF++YGGV
Sbjct: 1   MARSYVCVVLVLALA----AVHTSARDVPTEKNMHVASTKNAPSDAGLTDQKNFVSYGGV 60

Query: 61  GGFSGIGDSGLPFG--GGIGG--------GGLGGGGGLGGLGGGIGGFGGVGIGGIGGGV 117
           GG+SGIG  GLPFG  GGIGG        GGLGGGGGLGGLGGGIGG GG G+GG+GGGV
Sbjct: 61  GGYSGIGAGGLPFGGVGGIGGVAPLDGGFGGLGGGGGLGGLGGGIGGLGG-GVGGLGGGV 120

[Close]

BLAST of CSPI03G37160 vs. TrEMBL
Match: I1JPC2_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_03G170900 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 3.6e-09
Identity = 72/117 (61.54%), Postives = 88/117 (75.21%), Query Frame = 1


Query: 8   LMLVMAMAMAAFALHVTARTVPNDQAAKGLNDQKNFLNYGGVGGFSGIGDSGLPFGG-GI 67
           L+LV+A+A+A      +AR VPN + A GL DQKNF++YGGVGG+SGIG++GLPFGG G 
Sbjct: 7   LVLVLALAVAT-----SARNVPNPKDA-GLKDQKNFISYGGVGGYSGIGNNGLPFGGAGA 66

Query: 68  G-GGGLGGGGGL-GGLGGGIGGFGGVGIGGIGGGVGGGVIGGIG-GIGGGGGLVKLP 121
           G GGG GGGGGL GGLGG  GG G  G GG G GVGGG+ GG+G G+GGG G++  P
Sbjct: 67  GIGGGFGGGGGLGGGLGGPTGGIG--GFGGTGSGVGGGIGGGVGTGVGGGSGVLPFP 115

[Close]

BLAST of CSPI03G37160 vs. TrEMBL
Match: V4U408_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022672mg PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 6.8e-08
Identity = 77/139 (55.40%), Postives = 93/139 (66.91%), Query Frame = 1


Query: 1   MANYKLNLMLVMAMAMAAFALHVTARTVPNDQ-------AAK------GLNDQKNFLNYG 60
           MA +  N+MLV+A+A    A+H +AR  P+D         AK      GL+DQKNFL YG
Sbjct: 1   MAKWCANVMLVLAVA----AVHTSARNTPSDHDDQVVHNTAKSAPTDAGLDDQKNFLTYG 60

Query: 61  GVGGFSGIGDSGLPFGG--------GIGG-GGLGGGGGLGGLGG--GIGGFGGV-GIGGI 115
           GVGGFSGIG +GLPFGG        G+GG GGLGG GG+GGLGG  G+GG  G+ G+GG+
Sbjct: 61  GVGGFSGIGSNGLPFGGVGGLGGITGLGGAGGLGGIGGVGGLGGASGLGGSSGLGGVGGV 120

[Close]

BLAST of CSPI03G37160 vs. TrEMBL
Match: I1N9Y7_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_19G171900 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 8.9e-08
Identity = 70/117 (59.83%), Postives = 84/117 (71.79%), Query Frame = 1


Query: 8   LMLVMAMAMAAFALHVTARTVPNDQAAKGLNDQKNFLNYGGVGGFSGIGDSGLPFGG--- 67
           L+LV+A+A+A      +AR VPN + A GL DQKNF++YGGVG +SGIG +GLPFGG   
Sbjct: 7   LVLVLALALAT-----SARNVPNPKDA-GLKDQKNFISYGGVGAYSGIGSNGLPFGGVGA 66

Query: 68  GIGGGGLGG-GGGLGGLGGGIGGFGGVGIGGIGGGVGGGVIGGIGGIGGGGGLVKLP 121
           GIGGG  GG GGGLGGLGG  GG G  G GG GGGVGGG +G   G+GGG G++  P
Sbjct: 67  GIGGGFGGGLGGGLGGLGGTTGGIG--GFGGTGGGVGGGGVG--TGVGGGSGVLPFP 113

[Close]

BLAST of CSPI03G37160 vs. TAIR10
Match: AT4G29030.1 (AT4G29030.1 Putative membrane lipoprotein)

HSP 1 Score: 47.4 bits (111), Expect = 7.4e-06
Identity = 62/117 (52.99%), Postives = 76/117 (64.96%), Query Frame = 1


Query: 1   MANYKLNLMLVMAMAMAAFALHVTARTVPNDQAAKGLNDQKNFLNYGGVGGFSGIGDSGL 60
           MA +   + LV A+A A   L   AR VP      GL+DQKN+L YGG  G+SG+GD+GL
Sbjct: 1   MAKWFFTIFLVFALASA---LACGARNVP-----VGLSDQKNYLGYGG--GYSGVGDNGL 60

Query: 61  PFGGGIGGGGLGGGGGLGGLGGGIGGFGGVGIGGIGGGVGGGVIGGI-GGIGGGGGL 117
           PF GG+GGG  G GG L     G GGFGG G GG+GGG+GGG   G+ GG+GGG G+
Sbjct: 61  PF-GGVGGGVSGPGGNL-----GYGGFGGAG-GGLGGGLGGGAGSGLGGGLGGGSGI 100

[Close]

BLAST of CSPI03G37160 vs. NCBI nr
Match: gi|778685012|ref|XP_011652144.1| (PREDICTED: glycine-rich cell wall structural protein 1-like [Cucumis sativus])

HSP 1 Score: 185.3 bits (469), Expect = 6.5e-44
Identity = 119/120 (99.17%), Postives = 119/120 (99.17%), Query Frame = 1


Query: 1   MANYKLNLMLVMAMAMAAFALHVTARTVPNDQAAKGLNDQKNFLNYGGVGGFSGIGDSGL 60
           MANYKLNLMLVMAMAMAAFA HVTARTVPNDQAAKGLNDQKNFLNYGGVGGFSGIGDSGL
Sbjct: 1   MANYKLNLMLVMAMAMAAFAFHVTARTVPNDQAAKGLNDQKNFLNYGGVGGFSGIGDSGL 60

Query: 61  PFGGGIGGGGLGGGGGLGGLGGGIGGFGGVGIGGIGGGVGGGVIGGIGGIGGGGGLVKLP 120
           PFGGGIGGGGLGGGGGLGGLGGGIGGFGGVGIGGIGGGVGGGVIGGIGGIGGGGGLVKLP
Sbjct: 61  PFGGGIGGGGLGGGGGLGGLGGGIGGFGGVGIGGIGGGVGGGVIGGIGGIGGGGGLVKLP 120

[Close]

BLAST of CSPI03G37160 vs. NCBI nr
Match: gi|659093013|ref|XP_008447334.1| (PREDICTED: acanthoscurrin-2-like [Cucumis melo])

HSP 1 Score: 161.4 bits (407), Expect = 1.0e-36
Identity = 110/120 (91.67%), Postives = 112/120 (93.33%), Query Frame = 1


Query: 1   MANYKLNLMLVMAMAMAAFALHVTARTVPNDQAAKGLNDQKNFLNYGGVGGFSGIGDSGL 60
           MANYKLNLMLVMAMA  A ALHV ART PN+ AAKGLNDQKNFLNYGGVGGFSGIGD GL
Sbjct: 1   MANYKLNLMLVMAMA--ALALHVAARTAPNE-AAKGLNDQKNFLNYGGVGGFSGIGDGGL 60

Query: 61  PFGGGIGGGGLGGGGGLGGLGGGIGGFGGVGIGGIGGGVGGGVIGGIGGIGGGGGLVKLP 120
           PFGGG GGGGLGGGGGLGGLGGG+GGFGGVGIGGIGGGVGGGVIGGIGGIGGGGGLVKLP
Sbjct: 61  PFGGGFGGGGLGGGGGLGGLGGGVGGFGGVGIGGIGGGVGGGVIGGIGGIGGGGGLVKLP 117

[Close]

BLAST of CSPI03G37160 vs. NCBI nr
Match: gi|224065479|ref|XP_002301827.1| (glycine-rich family protein [Populus trichocarpa])

HSP 1 Score: 73.9 bits (180), Expect = 2.1e-10
Identity = 79/140 (56.43%), Postives = 97/140 (69.29%), Query Frame = 1


Query: 1   MANYKLNLMLVMAMAMAAFALHVTARTVPNDQ-----------AAKGLNDQKNFLNYGGV 60
           MA   + ++LV+A+A    A+H +AR VP ++           +  GL DQKNF++YGGV
Sbjct: 1   MARSYVCVVLVLALA----AVHTSARDVPTEKNMHVASTKNAPSDAGLTDQKNFVSYGGV 60

Query: 61  GGFSGIGDSGLPFG--GGIGG--------GGLGGGGGLGGLGGGIGGFGGVGIGGIGGGV 117
           GG+SGIG  GLPFG  GGIGG        GGLGGGGGLGGLGGGIGG GG G+GG+GGGV
Sbjct: 61  GGYSGIGAGGLPFGGVGGIGGVAPLDGGFGGLGGGGGLGGLGGGIGGLGG-GVGGLGGGV 120

[Close]

BLAST of CSPI03G37160 vs. NCBI nr
Match: gi|356505106|ref|XP_003521333.1| (PREDICTED: acanthoscurrin-1-like [Glycine max])

HSP 1 Score: 69.3 bits (168), Expect = 5.2e-09
Identity = 72/117 (61.54%), Postives = 88/117 (75.21%), Query Frame = 1


Query: 8   LMLVMAMAMAAFALHVTARTVPNDQAAKGLNDQKNFLNYGGVGGFSGIGDSGLPFGG-GI 67
           L+LV+A+A+A      +AR VPN + A GL DQKNF++YGGVGG+SGIG++GLPFGG G 
Sbjct: 7   LVLVLALAVAT-----SARNVPNPKDA-GLKDQKNFISYGGVGGYSGIGNNGLPFGGAGA 66

Query: 68  G-GGGLGGGGGL-GGLGGGIGGFGGVGIGGIGGGVGGGVIGGIG-GIGGGGGLVKLP 121
           G GGG GGGGGL GGLGG  GG G  G GG G GVGGG+ GG+G G+GGG G++  P
Sbjct: 67  GIGGGFGGGGGLGGGLGGPTGGIG--GFGGTGSGVGGGIGGGVGTGVGGGSGVLPFP 115

[Close]

BLAST of CSPI03G37160 vs. NCBI nr
Match: gi|593799230|ref|XP_007162653.1| (hypothetical protein PHAVU_001G168900g [Phaseolus vulgaris])

HSP 1 Score: 68.6 bits (166), Expect = 8.8e-09
Identity = 76/119 (63.87%), Postives = 86/119 (72.27%), Query Frame = 1


Query: 8   LMLVMAMAMAAFALHVTARTVPNDQAAKGLNDQKNFLNYGGVGGFSGIGDSGLPFGG-GI 67
           L+LV+A+A+A      +AR  P D    GL DQKNFL YGGVGG+SGIG +GLPFGG G 
Sbjct: 7   LVLVLALAVAT-----SARNAPTDA---GLKDQKNFLTYGGVGGYSGIGSNGLPFGGVGA 66

Query: 68  G-GGGLGGGGGLGG-LGG--GIGGFGGVGIGGIGGGVGGGVIGGIG-GIGGGGGLVKLP 121
           G GGG G GGGLGG LGG  GIGG GG  +GG GGGVGGGV GG+G GIGGG G+V  P
Sbjct: 67  GIGGGFGAGGGLGGGLGGTTGIGGLGG--LGGTGGGVGGGVGGGVGTGIGGGSGVVPFP 115

The following BLAST results are available for this feature:

BLAST of CSPI03G37160 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI03G37160 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LEM4_CUCSA	4.5e-44	99.17	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G814360 PE=4 SV=1	[more]
B9GR90_POPTR	1.5e-10	56.43	Glycine-rich family protein OS=Populus trichocarpa GN=POPTR_0002s25370g PE=4 SV=...	[more]
I1JPC2_SOYBN	3.6e-09	61.54	Uncharacterized protein OS=Glycine max GN=GLYMA_03G170900 PE=4 SV=1	[more]
V4U408_9ROSI	6.8e-08	55.40	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022672mg PE=4 SV=1	[more]
I1N9Y7_SOYBN	8.9e-08	59.83	Uncharacterized protein OS=Glycine max GN=GLYMA_19G171900 PE=4 SV=1	[more]

BLAST of CSPI03G37160 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G29030.1	7.4e-06	52.99	Putative membrane lipoprotein	[more]

BLAST of CSPI03G37160 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778685012\|ref\|XP_011652144.1\|	6.5e-44	99.17	PREDICTED: glycine-rich cell wall structural protein 1-like [Cucumis sativus]	[more]
gi\|659093013\|ref\|XP_008447334.1\|	1.0e-36	91.67	PREDICTED: acanthoscurrin-2-like [Cucumis melo]	[more]
gi\|224065479\|ref\|XP_002301827.1\|	2.1e-10	56.43	glycine-rich family protein [Populus trichocarpa]	[more]
gi\|356505106\|ref\|XP_003521333.1\|	5.2e-09	61.54	PREDICTED: acanthoscurrin-1-like [Glycine max]	[more]
gi\|593799230\|ref\|XP_007162653.1\|	8.8e-09	63.87	hypothetical protein PHAVU_001G168900g [Phaseolus vulgaris]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G37160.1	CSPI03G37160.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI03G37160	Csa3G814360	Cucumber (Chinese Long) v2	cpicuB120
CSPI03G37160	CsaV3_3G039490	Cucumber (Chinese Long) v3	cpicucB145
CSPI03G37160	Cucsa.337150	Cucumber (Gy14) v1	cgycpiB504

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI03G37160	Cucurbita maxima (Rimu)	cmacpiB241
CSPI03G37160	Cucurbita maxima (Rimu)	cmacpiB839
CSPI03G37160	Cucurbita moschata (Rifu)	cmocpiB229
CSPI03G37160	Cucurbita moschata (Rifu)	cmocpiB824
CSPI03G37160	Melon (DHL92) v3.5.1	cpimeB214
CSPI03G37160	Watermelon (Charleston Gray)	cpiwcgB195
CSPI03G37160	Watermelon (97103) v1	cpiwmB198
CSPI03G37160	Cucurbita pepo (Zucchini)	cpecpiB599
CSPI03G37160	Cucurbita pepo (Zucchini)	cpecpiB866
CSPI03G37160	Bottle gourd (USVL1VR-Ls)	cpilsiB184
CSPI03G37160	Melon (DHL92) v3.6.1	cpimedB208
CSPI03G37160	Cucumber (Gy14) v2	cgybcpiB111
CSPI03G37160	Silver-seed gourd	carcpiB0178
CSPI03G37160	Silver-seed gourd	carcpiB0280
CSPI03G37160	Watermelon (97103) v2	cpiwmbB189
CSPI03G37160	Wax gourd	cpiwgoB223