CsaV3_3G037900 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G037900
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionRNA pyrophosphohydrolase
Locationchr3 : 31212482 .. 31216805 (+)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAATTGAATTAAATAGAATGTTTTTTTTTTCTCAGGCCCCATCAGATTTGATGGACTCAACGTCTAAAAAGAGAAAAATCTCACATACAACTAAACCTTAATTCCATAATCTCACATATAAAACTGTTTCACAAATACACTCTCTCCTCCATGTTTAGACTTAAAGAATAACAAAATGACGTAAACATGAAGAGAAAAAGAAAATGTGAAATAAAAAAATCCACATAATTTTGAACTCCCATATTTAAGGTATAGCTTCTTGAAAGGATTCAATACTATAAAGAAAAGGGAAATCCCGATCCAACCCCCAAACATGACACAATACAGATACATGAAGAGAAGGAGTGAATGGTGATTTTGGAAGGACTACAAAAGAAACGAATAGCTAGAATTGAGAATCGTCTCCTTCAACAATAAATTTCGACCAAATATAAAATTAAATTAAGAACCTAGAAGAAAAATATAATAACAATAATAATAATATCAATATTGAAAAAGTAGTATTGTTCCAGTCCAAGGTCGTAGAAACTGCACAGAACGTGATCCTTTTTTCCTTACGTTTCTCACCAAAACAAAAAAAGAAGAAGAAGAAAAGAAACTCTTTCCTCCTATTGGTCAAAATAGTCTCACAAATTTAAAAGAAAAAAAAAAAGAAAATTAGGTGGATGATGGACCCACCTACTTGGGTATGATCAACGGCTGCTGCGATCCTACGGATCAAATTGGCTGCCAATGGGAAGGACTTCGGTACACTCTTCTTACGATGTACTCGACTTCACGGGAACAGTCCCCGCACCATTCCTTCTCCTTCTCAAACCTACTCTGTTATTCACACGCACCGCACAATGCACATAACATCAATTCTAAAACAACCTCAATTCGGGTCGGATTATTACTCCGATTCTTTTACGGGTCGGGCTATTGGACCCGCGTGTGACCGGAATCCCGCCGTCACCGCGTCGTTCGCGCAGCAGTGAAATCCCGCCGCCACCCCTCTTTCTTTTGCACTCAAGCAATCTCCGCAGATTCTCCTTTCCGATCTCCCACTCTTGTTCCGCCCCCCATCTCCGCCATCCCCCATCCTCAGGTTGCTCATCTGTATGCTCATTAAATACTTCTCCTTCTCCAATTGCAGCTTCCTAATTCGGTCTTCGTATTCGTATCGATCCATCACCGGCGAGATGAAGCCAGCGAGCAATTCGTTTTCGATGCCTCCGTTCCGTCTCAACAGCATCACATTCTCTGGTGGATTCTTCTTCTTTAATAGATTCGTCTTTGTTTGCGTCTTCGTCGCCGACGAGAAGTAATAATCCTCTTCGTTGTCGTGGATGACCTTTCGCCTCCTCTCGCGTCTTGACCGTTTCAAAACCACAAGAAAGAAACTATTCTTCTCGCCGGAGATTGCGCCAAAATTGACCTTCCCAGTAATAGGAATTCTCCGCCGAATCTTCGTGGAGGAATCCAGAGAGATCTTATACTCCGCGAGATAAACCGTGAACTGGTGCGAAGAGATTCCAATCATCTTGCTCAAACTGGACTGGAAATTCTTGAACTCCGTCGAAGAAGAAACGATAACGGAACCGATGTTGGTATCACGTTCGCCATCGTGGAAAACGATCGGGAACGAAACGCCCTCGACGGTCTCCGCCATCGCCTCTACAAATAAAAGAAAAACTCTTCAATTAAGGAACAGAAGGAAACTTTCATAAAAAAAGAAAGAAAGAAAGAAGAGGGTTTTACGGAGAAATCTTGAAGAAGACTATGGAAGGTTTTTACTTTAACAAGTGGGTTTTAGGTTTTTATGGTAACAACCTCAAGGCGGTGAGGGTATTTTCGGAATAAGATATTAGATTTATGGCCTTCGTACCTAAGGAAGCCAAACGAAGAACTAAGAAGGAAACTTCAAAACGTTTATATAGAAGGAAAGAGACTTGGGAATCAAGTAAAATATAAACGACATCGTAATAGTCAGCTTGGCTGTGTTTAGACCAAAATGCCCCCGTCTTCTAATTAAATCCTCGTCAACGCATTTTTGGAAGGGGTCGTCTTCTTCTTCATCTACCATCCTCCATCCATGGAGTTTCCTCCAGAAGGTTACAGAAGAGGCGTTGGGATTTGCCTTCTTAATTCTTCTGGAAAAGTAATTTCGCTTCGTTGCCTTCTTCTTTCGCTCTTATCTTGTTTTCTTCTGATCATAACCAATTTTTCTCTCTCCAATTCATCTTTTGCAGATTTTTGCAGCTTCGAGACCGAACGGGCATGAAATCTGGGAAATGCCTCAGGTAGTTTCTATTCCGTTGTATTTTCAGCTTTATTCATTGGGAAACAGGAAAAGTACTATCTCTCTGCTTTTCTTTAAGTACTTCTCTCGCTCTCGCTTTATTCTGTGCGAATTAGGGCACATATTTATAGGTTCCATCTCTGATTTCCTTGTGGGAATATCCCAAAATTCTTTCTTGAGATCCCTTTTTGAAGAAATTCGAGGATCAGCTGAAAATGAGAATGGGATTTTTGAGTAATCTGTACCCATTTCTCTCGAATTTTCTCTTTGAACGTAGTGTTGGTGGAATTCTTGCAATGGTGCTGCGGGTTCTGGTTCTTTCCATTAGAGAATTGTATTAGCTTTCAGAAAGCTGTTTATTATGGTTCTGATGGAAACTTTGGTGGGATTCTCATCTTTTCAATCATGAGACGGAGAGGTGTTTGATATTATGTCTTTATTTCTTTTACAATTGGAGTATCTACATGAGTTAGCTTATATACTATTTAACTAGGAAACTCATAGTTGACTTCAAATGATGGATTGATCCAGTAACTTCAAAATCATATAGATCTGTATTGCCTTGTGGAACTTGAAGCTTGTGGAGGATCCTTAAGTTTGTGTTCCCTGACACTGATTTTCCATCATACAGGGTGGTGTAAATGAAGGGGAAGATCTCAAAACTGCAGCCAAGAGAGAACTCATGGAAGAAACAGGAGTAGTTTCTGCAGAAATTATAGCTGAGGTATGCATTTTGAGATGGTTACAGTTATATAACTTTGCAGCTTCCATATCTCGTCTTAAGTACACTGTATGATGAACTTTAGAAAAATGAATTCTGGCTTCATTTGAATTGGGACTGATTCGATCCATGGTTAAATATAGCTACCCTACTGGCTTTCTTACGATTTCTCTCCCGAAGTAAGCATCAGACACATCAAACACTGGGGAGTCAGATACAAAGGCCAGACCCATAAGTGGTATTGCCTCCATAAAATCCGACTCCTATAACATTTTCTTGTTAAGGAACTTTCCTTTTTGGAAAGCATCTCCACATTTTTTTTTTTACTTTCTTTGCATGATCCTATTTTCTTTTAATCCTCAAAGAACTGTACATAGTTGGTAACTTTTTCTTTCTTTCAGCTTCAAAGAATTGATCAACGTATATGGATTATATTATTTCCCCTTCAAGCTTCCGCGTTCAATTGATCAATCATAAAGCTCGTGAACAGGTTTCTCATGAAGTTTACCGGAAAAGACGAAGAGATAAATCTTCTAGGTGATGGAACAGAAAGGCAAGAGTTTGGGAAATGGTCATGGATGTCAATTGAACAGCTACTGAACCAAGTGTGTAAACAACTTCTACCTAATTCATTCTTTCTCCTGCAACAATTTTTCACAAACCTTTACAATCATTTGAACAGGCTAAGAAATCCCGGAAGCCTGTTTACGAACAAGTGATGAAGGAGTTTGGTAACATCATACTTGGAATTGTGGGTGACGATCTTTCTCTCACGCAGAGTGAAACTCAGTTGGATATTTGATGGGTTTCGAATATATTTATCGATAGTACCACGAACATATACCATACGAATCACAGGTTCATATAAGATGTTATGTAGTCATATCTAAGTTTGATTTTTAAAATAAGAGATGCCTTTATTTAGAGATAAGGCAGATATGTTTGATCCTCTTGGAACTTGAAGTGGTGGATTAATGAAATCTGAGGCCAAGATATTGGAATCAGAACCTTCACTAAATTGTGCAGCTGTAAAAGGATTTAAGTGTCCAAATAAGAGATAAAGGGATTTTGATTTATAGAAAGGAATCAAAACGTGGGATTCACTTTTAAATTTCGGAATTATTCTCTTAAAAGTGATTGGATTTTCATTGCCCAAACAAAACATTTTCAAAACTTTGTTCTCCTTTCCTATTTTGTGAAATCTATTGCTTATTTTTCAATCTTTTGTATTTAAAACTTTTAGGGGTTGTTGGATAAAGAATTGTTTAAACTCGAGTTGTTAAGTTCATATTCCAACTTTCTTTTTTAATCAATGCTATAGG

mRNA sequence

ATGGAGTTTCCTCCAGAAGGTTACAGAAGAGGCGTTGGGATTTGCCTTCTTAATTCTTCTGGAAAAATTTTTGCAGCTTCGAGACCGAACGGGCATGAAATCTGGGAAATGCCTCAGGGTGGTGTAAATGAAGGGGAAGATCTCAAAACTGCAGCCAAGAGAGAACTCATGGAAGAAACAGGAGTAGTTTCTGCAGAAATTATAGCTGAGCTACCCTACTGGCTTTCTTACGATTTCTCTCCCGAAGTAAGCATCAGACACATCAAACACTGGGGAGTCAGATACAAAGGCCAGACCCATAAGTGCTTCAAAGAATTGATCAACGTATATGGATTATATTATTTCCCCTTCAAGCTTCCGCGTTCAATTGATCAATCATAA

Coding sequence (CDS)

ATGGAGTTTCCTCCAGAAGGTTACAGAAGAGGCGTTGGGATTTGCCTTCTTAATTCTTCTGGAAAAATTTTTGCAGCTTCGAGACCGAACGGGCATGAAATCTGGGAAATGCCTCAGGGTGGTGTAAATGAAGGGGAAGATCTCAAAACTGCAGCCAAGAGAGAACTCATGGAAGAAACAGGAGTAGTTTCTGCAGAAATTATAGCTGAGCTACCCTACTGGCTTTCTTACGATTTCTCTCCCGAAGTAAGCATCAGACACATCAAACACTGGGGAGTCAGATACAAAGGCCAGACCCATAAGTGCTTCAAAGAATTGATCAACGTATATGGATTATATTATTTCCCCTTCAAGCTTCCGCGTTCAATTGATCAATCATAA

Protein sequence

MEFPPEGYRRGVGICLLNSSGKIFAASRPNGHEIWEMPQGGVNEGEDLKTAAKRELMEETGVVSAEIIAELPYWLSYDFSPEVSIRHIKHWGVRYKGQTHKCFKELINVYGLYYFPFKLPRSIDQS
Homology
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BLAST of CsaV3_3G037900 vs. NCBI nr
Match: KGN59203.1 (hypothetical protein Csa_3G781040 [Cucumis sativus])

HSP 1 Score: 271.9 bits (694), Expect = 1.1e-69
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0 

Query: 1   MEFPPEGYRRGVGICLLNSSGKIFAASRPNGHEIWEMPQGGVNEGEDLKTAAKRELMEET 60
           MEFPPEGYRRGVGICLLNSSGKIFAASRPNGHEIWEMPQGGVNEGEDLKTAAKRELMEET
Sbjct: 1   MEFPPEGYRRGVGICLLNSSGKIFAASRPNGHEIWEMPQGGVNEGEDLKTAAKRELMEET 60

Query: 61  GVVSAEIIAELPYWLSYDFSPEVSIRHIKHWGVRYKGQTHKCFKELINVYGLYYFPFKLP 120
           GVVSAEIIAELPYWLSYDFSPEVSIRHIKHWGVRYKGQTHKCFKELINVYGLYYFPFKLP
Sbjct: 61  GVVSAEIIAELPYWLSYDFSPEVSIRHIKHWGVRYKGQTHKCFKELINVYGLYYFPFKLP 120

Query: 121 RSIDQS 127
           RSIDQS
Sbjct: 121 RSIDQS 126

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BLAST of CsaV3_3G037900 vs. NCBI nr
Match: XP_011652033.1 (PREDICTED: nudix hydrolase 26, chloroplastic-like [Cucumis sativus])

HSP 1 Score: 219.2 bits (557), Expect = 8.2e-54
Identity = 102/103 (99.03%), Postives = 102/103 (99.03%), Query Frame = 0 

Query: 1   MEFPPEGYRRGVGICLLNSSGKIFAASRPNGHEIWEMPQGGVNEGEDLKTAAKRELMEET 60
           MEFPPEGYRRGVGICLLNSSGKIFAASRPNGHEIWEMPQGGVNEGEDLKTAAKRELMEET
Sbjct: 1   MEFPPEGYRRGVGICLLNSSGKIFAASRPNGHEIWEMPQGGVNEGEDLKTAAKRELMEET 60

Query: 61  GVVSAEIIAELPYWLSYDFSPEVSIRHIKHWGVRYKGQTHKCF 104
           GVVSAEIIAELPYWLSYDFSPEVSIRHIKHWGVRYKGQTHK F
Sbjct: 61  GVVSAEIIAELPYWLSYDFSPEVSIRHIKHWGVRYKGQTHKWF 103

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BLAST of CsaV3_3G037900 vs. NCBI nr
Match: XP_008443595.2 (PREDICTED: nudix hydrolase 26, chloroplastic-like [Cucumis melo])

HSP 1 Score: 212.2 bits (539), Expect = 1.0e-51
Identity = 99/103 (96.12%), Postives = 99/103 (96.12%), Query Frame = 0 

Query: 1   MEFPPEGYRRGVGICLLNSSGKIFAASRPNGHEIWEMPQGGVNEGEDLKTAAKRELMEET 60
           MEFPPEGYRRGVGICL NSSGKIFAASR NGHEIWEMPQGGVNEGEDLKTAAKRELMEET
Sbjct: 1   MEFPPEGYRRGVGICLFNSSGKIFAASRLNGHEIWEMPQGGVNEGEDLKTAAKRELMEET 60

Query: 61  GVVSAEIIAELPYWLSYDFSPEVSIRHIKHWGVRYKGQTHKCF 104
           GVVSAEIIAELPYWLSYDFSPEVSIRHIKHWG RYKGQTHK F
Sbjct: 61  GVVSAEIIAELPYWLSYDFSPEVSIRHIKHWGARYKGQTHKWF 103

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BLAST of CsaV3_3G037900 vs. NCBI nr
Match: XP_023528158.1 (nudix hydrolase 26, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 184.1 bits (466), Expect = 2.9e-43
Identity = 91/117 (77.78%), Postives = 95/117 (81.20%), Query Frame = 0 

Query: 2   EFPPEGYRRGVGICLLNSSGKIFAASRPNGHEIWEMPQGGVNEGEDLKTAAKRELMEETG 61
           EFPPEGYRR VGICL N SGKIFAASR N  E+WEMPQGGVNEGEDL TAAKREL EETG
Sbjct: 45  EFPPEGYRRNVGICLFNPSGKIFAASRLNRPEVWEMPQGGVNEGEDLTTAAKRELAEETG 104

Query: 62  VVSAEIIAELPYWLSYDFSPEVSIRHIKHWGVRYKGQTHKCF-------KELINVYG 112
           VVSAEIIAELPYWLSYDFSPE SI+  KHWGVRYKGQT K F       +E IN+ G
Sbjct: 105 VVSAEIIAELPYWLSYDFSPETSIKLSKHWGVRYKGQTQKWFLMKFTGKEEEINLLG 161

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BLAST of CsaV3_3G037900 vs. NCBI nr
Match: XP_022983100.1 (nudix hydrolase 26, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 182.2 bits (461), Expect = 1.1e-42
Identity = 89/117 (76.07%), Postives = 95/117 (81.20%), Query Frame = 0 

Query: 2   EFPPEGYRRGVGICLLNSSGKIFAASRPNGHEIWEMPQGGVNEGEDLKTAAKRELMEETG 61
           EFPPEGYRR VGICL N SGKIFAASR N  E+WEMPQGGVNEGEDL TAAKREL EETG
Sbjct: 45  EFPPEGYRRNVGICLFNPSGKIFAASRLNRPEVWEMPQGGVNEGEDLNTAAKRELTEETG 104

Query: 62  VVSAEIIAELPYWLSYDFSPEVSIRHIKHWGVRYKGQTHKCF-------KELINVYG 112
           VVSAEII+ELPYWL+YDFSPE SI+  KHWGVRYKGQT K F       +E IN+ G
Sbjct: 105 VVSAEIISELPYWLTYDFSPETSIKLSKHWGVRYKGQTQKWFLMKFTGKEEEINLLG 161

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BLAST of CsaV3_3G037900 vs. TAIR10
Match: AT3G10620.1 (nudix hydrolase homolog 26)

HSP 1 Score: 132.5 bits (332), Expect = 1.8e-31
Identity = 61/103 (59.22%), Postives = 75/103 (72.82%), Query Frame = 0 

Query: 1   MEFPPEGYRRGVGICLLNSSGKIFAASRPNGHEIWEMPQGGVNEGEDLKTAAKRELMEET 60
           ME PPEGYRR VG+CL+NSS KIF ASR +    W+MPQGG++EGED + A  REL EET
Sbjct: 56  MESPPEGYRRNVGVCLMNSSKKIFTASRLDIPSAWQMPQGGIDEGEDPRVAVMRELKEET 115

Query: 61  GVVSAEIIAELPYWLSYDFSPEVSIRHIKHWGVRYKGQTHKCF 104
           GV SAEI+AE P+W++YDF P+V  +    WG  +KGQ  K F
Sbjct: 116 GVHSAEILAEAPHWITYDFPPDVREKLKVRWGSDWKGQAQKWF 158

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BLAST of CsaV3_3G037900 vs. TAIR10
Match: AT5G06340.1 (nudix hydrolase homolog 27)

HSP 1 Score: 124.0 bits (310), Expect = 6.5e-29
Identity = 62/118 (52.54%), Postives = 78/118 (66.10%), Query Frame = 0 

Query: 1   MEFPPEGYRRGVGICLLNSSGKIFAASRPNGHEIWEMPQGGVNEGEDLKTAAKRELMEET 60
           +E PP GYR+ VGICL++   KIF AS+ +  + W+MPQGG +EGEDL+ AA REL EET
Sbjct: 55  VESPPVGYRKNVGICLVSPCRKIFTASKIHIPDTWQMPQGGADEGEDLRNAAFRELREET 114

Query: 61  GVVSAEIIAELPYWLSYDFSPEVSIRHIKHWGVRYKGQTHKCF-------KELINVYG 112
           GV SAE IAE+P WL+YDF  EV  +  + W   YKGQ  K F       +E IN+ G
Sbjct: 115 GVTSAEFIAEIPNWLTYDFPREVKDKLNRKWRTSYKGQAQKWFLFKFTGKEEEINLLG 172

[Close]
BLAST of CsaV3_3G037900 vs. TAIR10
Match: AT1G30110.1 (nudix hydrolase homolog 25)

HSP 1 Score: 122.1 bits (305), Expect = 2.5e-28
Identity = 56/103 (54.37%), Postives = 71/103 (68.93%), Query Frame = 0 

Query: 1   MEFPPEGYRRGVGICLLNSSGKIFAASRPNGHEIWEMPQGGVNEGEDLKTAAKRELMEET 60
           ME  P GYR  VG+CL+NS   +F ASR N    W+MPQGG+ +GED K+AA REL EET
Sbjct: 1   MENLPPGYRPNVGVCLINSDNLVFVASRLNVPGAWQMPQGGIEDGEDPKSAAMRELQEET 60

Query: 61  GVVSAEIIAELPYWLSYDFSPEVSIRHIKHWGVRYKGQTHKCF 104
           GVVSAEI++E+P WL+YDF P V  +  + WG  + GQ  K +
Sbjct: 61  GVVSAEIVSEVPNWLTYDFPPAVKAKVNRLWGGEWHGQAQKWY 103

[Close]
BLAST of CsaV3_3G037900 vs. TAIR10
Match: AT2G04450.1 (nudix hydrolase homolog 6)

HSP 1 Score: 43.1 bits (100), Expect = 1.5e-04
Identity = 23/60 (38.33%), Postives = 34/60 (56.67%), Query Frame = 0 

Query: 8   YRRGVGICLLNSSGK-IFAASRPNGH----EIWEMPQGGVNEGEDLKTAAKRELMEETGV 63
           +R GVG  +LN   K +      +GH     +W++P G V EGE++   A RE+ EETG+
Sbjct: 102 HRIGVGAFVLNKKTKEVLVVQEIDGHFKGTGVWKLPTGVVKEGENIWEGALREVEEETGI 161

[Close]
BLAST of CsaV3_3G037900 vs. TAIR10
Match: AT5G47240.1 (nudix hydrolase homolog 8)

HSP 1 Score: 40.8 bits (94), Expect = 7.3e-04
Identity = 23/65 (35.38%), Postives = 38/65 (58.46%), Query Frame = 0 

Query: 11  GVGICLLNSSGKIFAASR----PNGHEIWEMPQGGVNEGEDLKTAAKRELMEETGVVS-- 70
           GVG  +LN   ++         P+   +W++P G +NE E++ + A RE+ EETGV +  
Sbjct: 192 GVGGFVLNQHKEVLVVQEKYCAPSITGLWKLPTGFINESEEIFSGAVREVKEETGVDTEF 251

[Close]
BLAST of CsaV3_3G037900 vs. Swiss-Prot
Match: sp|Q9CAF2|NUD26_ARATH (Nudix hydrolase 26, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=NUDT26 PE=1 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 3.3e-30
Identity = 61/103 (59.22%), Postives = 75/103 (72.82%), Query Frame = 0 

Query: 1   MEFPPEGYRRGVGICLLNSSGKIFAASRPNGHEIWEMPQGGVNEGEDLKTAAKRELMEET 60
           ME PPEGYRR VG+CL+NSS KIF ASR +    W+MPQGG++EGED + A  REL EET
Sbjct: 56  MESPPEGYRRNVGVCLMNSSKKIFTASRLDIPSAWQMPQGGIDEGEDPRVAVMRELKEET 115

Query: 61  GVVSAEIIAELPYWLSYDFSPEVSIRHIKHWGVRYKGQTHKCF 104
           GV SAEI+AE P+W++YDF P+V  +    WG  +KGQ  K F
Sbjct: 116 GVHSAEILAEAPHWITYDFPPDVREKLKVRWGSDWKGQAQKWF 158

[Close]
BLAST of CsaV3_3G037900 vs. Swiss-Prot
Match: sp|Q9FNH4|NUD27_ARATH (Nudix hydrolase 27, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=NUDT27 PE=1 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 1.2e-27
Identity = 62/118 (52.54%), Postives = 78/118 (66.10%), Query Frame = 0 

Query: 1   MEFPPEGYRRGVGICLLNSSGKIFAASRPNGHEIWEMPQGGVNEGEDLKTAAKRELMEET 60
           +E PP GYR+ VGICL++   KIF AS+ +  + W+MPQGG +EGEDL+ AA REL EET
Sbjct: 55  VESPPVGYRKNVGICLVSPCRKIFTASKIHIPDTWQMPQGGADEGEDLRNAAFRELREET 114

Query: 61  GVVSAEIIAELPYWLSYDFSPEVSIRHIKHWGVRYKGQTHKCF-------KELINVYG 112
           GV SAE IAE+P WL+YDF  EV  +  + W   YKGQ  K F       +E IN+ G
Sbjct: 115 GVTSAEFIAEIPNWLTYDFPREVKDKLNRKWRTSYKGQAQKWFLFKFTGKEEEINLLG 172

[Close]
BLAST of CsaV3_3G037900 vs. Swiss-Prot
Match: sp|Q9C6Z2|NUD25_ARATH (Nudix hydrolase 25 OS=Arabidopsis thaliana OX=3702 GN=NUDT25 PE=1 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 4.5e-27
Identity = 56/103 (54.37%), Postives = 71/103 (68.93%), Query Frame = 0 

Query: 1   MEFPPEGYRRGVGICLLNSSGKIFAASRPNGHEIWEMPQGGVNEGEDLKTAAKRELMEET 60
           ME  P GYR  VG+CL+NS   +F ASR N    W+MPQGG+ +GED K+AA REL EET
Sbjct: 1   MENLPPGYRPNVGVCLINSDNLVFVASRLNVPGAWQMPQGGIEDGEDPKSAAMRELQEET 60

Query: 61  GVVSAEIIAELPYWLSYDFSPEVSIRHIKHWGVRYKGQTHKCF 104
           GVVSAEI++E+P WL+YDF P V  +  + WG  + GQ  K +
Sbjct: 61  GVVSAEIVSEVPNWLTYDFPPAVKAKVNRLWGGEWHGQAQKWY 103

[Close]
BLAST of CsaV3_3G037900 vs. Swiss-Prot
Match: sp|Q2RV14|RPPH_RHORT (RNA pyrophosphohydrolase OS=Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG 4362 / NCIB 8255 / S1) OX=269796 GN=rppH PE=3 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 5.0e-18
Identity = 45/96 (46.88%), Postives = 62/96 (64.58%), Query Frame = 0 

Query: 8   YRRGVGICLLNSSGKIFAASRPNGHEIWEMPQGGVNEGEDLKTAAKRELMEETGVVSAEI 67
           YR+GVGI L+N+ G++F A R +  E W+MPQGG++ GED +TAA RE+ EE G  +A +
Sbjct: 14  YRQGVGIMLINARGQVFVARRLDSPEAWQMPQGGIDAGEDPETAAWREMEEEIGTRNALL 73

Query: 68  IAELPYWLSYDFSPEVSIRHIKHWGVRYKGQTHKCF 104
           + E   WL YD   E+  R    WG R++GQ  K F
Sbjct: 74  LGETAGWLGYDLPEELRGR---LWGGRFQGQRQKWF 106

[Close]
BLAST of CsaV3_3G037900 vs. Swiss-Prot
Match: sp|A8LKJ8|RPPH_DINSH (RNA pyrophosphohydrolase OS=Dinoroseobacter shibae (strain DSM 16493 / NCIMB 14021 / DFL 12) OX=398580 GN=rppH PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 2.5e-17
Identity = 44/97 (45.36%), Postives = 61/97 (62.89%), Query Frame = 0 

Query: 8   YRRGVGICLLNSSGKIFAASRPNGH-EIWEMPQGGVNEGEDLKTAAKRELMEETGVV--S 67
           YR+ VG+ L + +G++F   R +     W+MPQGG+ +GED +TAA REL+EETGV    
Sbjct: 11  YRKCVGVVLWDGAGRVFTGQRYDSELPAWQMPQGGIEDGEDARTAALRELVEETGVAVEK 70

Query: 68  AEIIAELPYWLSYDFSPEVSIRHIKHWGVRYKGQTHK 102
            E++AE P W+ YD  PE+  R    W  RYKGQ  +
Sbjct: 71  VEVLAETPDWIKYDLPPEIVPR---IWKGRYKGQAQR 104

[Close]
BLAST of CsaV3_3G037900 vs. TrEMBL
Match: tr|A0A0A0LBJ8|A0A0A0LBJ8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G781040 PE=3 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 7.1e-70
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0 

Query: 1   MEFPPEGYRRGVGICLLNSSGKIFAASRPNGHEIWEMPQGGVNEGEDLKTAAKRELMEET 60
           MEFPPEGYRRGVGICLLNSSGKIFAASRPNGHEIWEMPQGGVNEGEDLKTAAKRELMEET
Sbjct: 1   MEFPPEGYRRGVGICLLNSSGKIFAASRPNGHEIWEMPQGGVNEGEDLKTAAKRELMEET 60

Query: 61  GVVSAEIIAELPYWLSYDFSPEVSIRHIKHWGVRYKGQTHKCFKELINVYGLYYFPFKLP 120
           GVVSAEIIAELPYWLSYDFSPEVSIRHIKHWGVRYKGQTHKCFKELINVYGLYYFPFKLP
Sbjct: 61  GVVSAEIIAELPYWLSYDFSPEVSIRHIKHWGVRYKGQTHKCFKELINVYGLYYFPFKLP 120

Query: 121 RSIDQS 127
           RSIDQS
Sbjct: 121 RSIDQS 126

[Close]
BLAST of CsaV3_3G037900 vs. TrEMBL
Match: tr|A0A1S3B8G6|A0A1S3B8G6_CUCME (nudix hydrolase 26, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103487152 PE=3 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 6.7e-52
Identity = 99/103 (96.12%), Postives = 99/103 (96.12%), Query Frame = 0 

Query: 1   MEFPPEGYRRGVGICLLNSSGKIFAASRPNGHEIWEMPQGGVNEGEDLKTAAKRELMEET 60
           MEFPPEGYRRGVGICL NSSGKIFAASR NGHEIWEMPQGGVNEGEDLKTAAKRELMEET
Sbjct: 1   MEFPPEGYRRGVGICLFNSSGKIFAASRLNGHEIWEMPQGGVNEGEDLKTAAKRELMEET 60

Query: 61  GVVSAEIIAELPYWLSYDFSPEVSIRHIKHWGVRYKGQTHKCF 104
           GVVSAEIIAELPYWLSYDFSPEVSIRHIKHWG RYKGQTHK F
Sbjct: 61  GVVSAEIIAELPYWLSYDFSPEVSIRHIKHWGARYKGQTHKWF 103

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BLAST of CsaV3_3G037900 vs. TrEMBL
Match: tr|B9H9A4|B9H9A4_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_006G203700v3 PE=3 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 1.3e-31
Identity = 67/103 (65.05%), Postives = 75/103 (72.82%), Query Frame = 0 

Query: 1   MEFPPEGYRRGVGICLLNSSGKIFAASRPNGHEIWEMPQGGVNEGEDLKTAAKRELMEET 60
           ME PP+GYRR VGICL+NSS KIF A R N  + W+MPQGG  EGEDL TAA REL EET
Sbjct: 59  METPPDGYRRNVGICLVNSSKKIFTALRINISDTWQMPQGGAGEGEDLLTAAMRELREET 118

Query: 61  GVVSAEIIAELPYWLSYDFSPEVSIRHIKHWGVRYKGQTHKCF 104
           GV SAE +AE PYWL+YDF P+   R  + WG  YKGQT K F
Sbjct: 119 GVTSAEFVAEAPYWLTYDFPPQTRERLSRRWGTNYKGQTQKWF 161

[Close]
BLAST of CsaV3_3G037900 vs. TrEMBL
Match: tr|A0A2K2A599|A0A2K2A599_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_006G203700v3 PE=3 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 1.3e-31
Identity = 67/103 (65.05%), Postives = 75/103 (72.82%), Query Frame = 0 

Query: 1   MEFPPEGYRRGVGICLLNSSGKIFAASRPNGHEIWEMPQGGVNEGEDLKTAAKRELMEET 60
           ME PP+GYRR VGICL+NSS KIF A R N  + W+MPQGG  EGEDL TAA REL EET
Sbjct: 59  METPPDGYRRNVGICLVNSSKKIFTALRINISDTWQMPQGGAGEGEDLLTAAMRELREET 118

Query: 61  GVVSAEIIAELPYWLSYDFSPEVSIRHIKHWGVRYKGQTHKCF 104
           GV SAE +AE PYWL+YDF P+   R  + WG  YKGQT K F
Sbjct: 119 GVTSAEFVAEAPYWLTYDFPPQTRERLSRRWGTNYKGQTQKWF 161

[Close]
BLAST of CsaV3_3G037900 vs. TrEMBL
Match: tr|A0A2K2A5A2|A0A2K2A5A2_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_006G203700v3 PE=3 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 1.3e-31
Identity = 67/103 (65.05%), Postives = 75/103 (72.82%), Query Frame = 0 

Query: 1   MEFPPEGYRRGVGICLLNSSGKIFAASRPNGHEIWEMPQGGVNEGEDLKTAAKRELMEET 60
           ME PP+GYRR VGICL+NSS KIF A R N  + W+MPQGG  EGEDL TAA REL EET
Sbjct: 59  METPPDGYRRNVGICLVNSSKKIFTALRINISDTWQMPQGGAGEGEDLLTAAMRELREET 118

Query: 61  GVVSAEIIAELPYWLSYDFSPEVSIRHIKHWGVRYKGQTHKCF 104
           GV SAE +AE PYWL+YDF P+   R  + WG  YKGQT K F
Sbjct: 119 GVTSAEFVAEAPYWLTYDFPPQTRERLSRRWGTNYKGQTQKWF 161

The following BLAST results are available for this feature:
BLAST of CsaV3_3G037900 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN59203.11.1e-69100.00hypothetical protein Csa_3G781040 [Cucumis sativus][more]
XP_011652033.18.2e-5499.03PREDICTED: nudix hydrolase 26, chloroplastic-like [Cucumis sativus][more]
XP_008443595.21.0e-5196.12PREDICTED: nudix hydrolase 26, chloroplastic-like [Cucumis melo][more]
XP_023528158.12.9e-4377.78nudix hydrolase 26, chloroplastic-like [Cucurbita pepo subsp. pepo][more]
XP_022983100.11.1e-4276.07nudix hydrolase 26, chloroplastic-like [Cucurbita maxima][more]
BLAST of CsaV3_3G037900 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G10620.11.8e-3159.22nudix hydrolase homolog 26[more]
AT5G06340.16.5e-2952.54nudix hydrolase homolog 27[more]
AT1G30110.12.5e-2854.37nudix hydrolase homolog 25[more]
AT2G04450.11.5e-0438.33nudix hydrolase homolog 6[more]
AT5G47240.17.3e-0435.38nudix hydrolase homolog 8[more]
BLAST of CsaV3_3G037900 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9CAF2|NUD26_ARATH3.3e-3059.22Nudix hydrolase 26, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=NUDT26 PE=1... [more]
sp|Q9FNH4|NUD27_ARATH1.2e-2752.54Nudix hydrolase 27, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=NUDT27 PE=1... [more]
sp|Q9C6Z2|NUD25_ARATH4.5e-2754.37Nudix hydrolase 25 OS=Arabidopsis thaliana OX=3702 GN=NUDT25 PE=1 SV=1[more]
sp|Q2RV14|RPPH_RHORT5.0e-1846.88RNA pyrophosphohydrolase OS=Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1... [more]
sp|A8LKJ8|RPPH_DINSH2.5e-1745.36RNA pyrophosphohydrolase OS=Dinoroseobacter shibae (strain DSM 16493 / NCIMB 140... [more]
BLAST of CsaV3_3G037900 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LBJ8|A0A0A0LBJ8_CUCSA7.1e-70100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G781040 PE=3 SV=1[more]
tr|A0A1S3B8G6|A0A1S3B8G6_CUCME6.7e-5296.12nudix hydrolase 26, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103487152 P... [more]
tr|B9H9A4|B9H9A4_POPTR1.3e-3165.05Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_006G203700v3 PE=... [more]
tr|A0A2K2A599|A0A2K2A599_POPTR1.3e-3165.05Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_006G203700v3 PE=... [more]
tr|A0A2K2A5A2|A0A2K2A5A2_POPTR1.3e-3165.05Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_006G203700v3 PE=... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
Vocabulary: INTERPRO
TermDefinition
IPR015797NUDIX_hydrolase-like_dom_sf
IPR020084NUDIX_hydrolase_CS
IPR000086NUDIX_hydrolase_dom
IPR020476Nudix_hydrolase
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0008152 metabolic process
biological_process GO:0006753 nucleoside phosphate metabolic process
biological_process GO:0006144 purine nucleobase metabolic process
biological_process GO:0019243 methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione
cellular_component GO:0005575 cellular_component
cellular_component GO:0009507 chloroplast
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0004551 nucleotide diphosphatase activity
molecular_function GO:0034432 bis(5'-adenosyl)-pentaphosphatase activity
molecular_function GO:0008893 guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G037900.1CsaV3_3G037900.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR020476NUDIX hydrolasePRINTSPR00502NUDIXFAMILYcoord: 35..49
score: 38.64
coord: 49..64
score: 47.79
IPR000086NUDIX hydrolase domainPFAMPF00293NUDIXcoord: 8..90
e-value: 1.6E-18
score: 66.9
IPR000086NUDIX hydrolase domainPROSITEPS51462NUDIXcoord: 7..126
score: 13.109
NoneNo IPR availableGENE3DG3DSA:3.90.79.10coord: 1..110
e-value: 3.1E-29
score: 103.8
NoneNo IPR availablePANTHERPTHR11839UDP/ADP-SUGAR PYROPHOSPHATASEcoord: 1..103
NoneNo IPR availablePANTHERPTHR11839:SF8NUDIX HYDROLASE 25coord: 1..103
IPR020084NUDIX hydrolase, conserved sitePROSITEPS00893NUDIX_BOXcoord: 40..61
IPR015797NUDIX hydrolase-like domain superfamilySUPERFAMILYSSF55811Nudixcoord: 5..102

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_3G037900CSPI03G35570Wild cucumber (PI 183967)cpicucB145
CsaV3_3G037900Cucsa.241780Cucumber (Gy14) v1cgycucB363
CsaV3_3G037900CmaCh14G003540Cucurbita maxima (Rimu)cmacucB0279
CsaV3_3G037900CmoCh14G003520Cucurbita moschata (Rifu)cmocucB0270
CsaV3_3G037900Cp4.1LG03g00590Cucurbita pepo (Zucchini)cpecucB0747
CsaV3_3G037900Carg03632Silver-seed gourdcarcucB0279
CsaV3_3G037900MELO3C009535Melon (DHL92) v3.5.1cucmeB228
CsaV3_3G037900Lsi03G018260Bottle gourd (USVL1VR-Ls)cuclsiB207
CsaV3_3G037900MELO3C009535.2Melon (DHL92) v3.6.1cucmedB221
CsaV3_3G037900Bhi11G001992Wax gourdcucwgoB243
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_3G037900Cucumber (Chinese Long) v3cuccucB023
CsaV3_3G037900Cucumber (Chinese Long) v3cuccucB136
CsaV3_3G037900Cucumber (Chinese Long) v3cuccucB139
CsaV3_3G037900Silver-seed gourdcarcucB0269
CsaV3_3G037900Silver-seed gourdcarcucB0445
CsaV3_3G037900Silver-seed gourdcarcucB0714
CsaV3_3G037900Silver-seed gourdcarcucB0846
CsaV3_3G037900Cucumber (Gy14) v2cgybcucB117
CsaV3_3G037900Cucumber (Gy14) v2cgybcucB268
CsaV3_3G037900Cucumber (Gy14) v2cgybcucB272
CsaV3_3G037900Cucumber (Gy14) v1cgycucB084
CsaV3_3G037900Cucumber (Gy14) v1cgycucB296
CsaV3_3G037900Cucumber (Gy14) v1cgycucB498
CsaV3_3G037900Cucurbita maxima (Rimu)cmacucB0658
CsaV3_3G037900Cucurbita maxima (Rimu)cmacucB0720
CsaV3_3G037900Cucurbita maxima (Rimu)cmacucB0788
CsaV3_3G037900Cucurbita maxima (Rimu)cmacucB0966
CsaV3_3G037900Cucurbita maxima (Rimu)cmacucB1014
CsaV3_3G037900Cucurbita pepo (Zucchini)cpecucB1057
CsaV3_3G037900Cucurbita moschata (Rifu)cmocucB0708
CsaV3_3G037900Cucurbita moschata (Rifu)cmocucB0771
CsaV3_3G037900Cucurbita moschata (Rifu)cmocucB0954
CsaV3_3G037900Cucurbita moschata (Rifu)cmocucB0997
CsaV3_3G037900Cucurbita pepo (Zucchini)cpecucB0594
CsaV3_3G037900Wild cucumber (PI 183967)cpicucB030
CsaV3_3G037900Wild cucumber (PI 183967)cpicucB337
CsaV3_3G037900Bottle gourd (USVL1VR-Ls)cuclsiB178
CsaV3_3G037900Bottle gourd (USVL1VR-Ls)cuclsiB185
CsaV3_3G037900Bottle gourd (USVL1VR-Ls)cuclsiB203
CsaV3_3G037900Melon (DHL92) v3.5.1cucmeB218
CsaV3_3G037900Melon (DHL92) v3.5.1cucmeB234
CsaV3_3G037900Melon (DHL92) v3.5.1cucmeB261
CsaV3_3G037900Melon (DHL92) v3.6.1cucmedB211
CsaV3_3G037900Melon (DHL92) v3.6.1cucmedB226
CsaV3_3G037900Melon (DHL92) v3.6.1cucmedB256
CsaV3_3G037900Watermelon (Charleston Gray)cucwcgB199
CsaV3_3G037900Watermelon (Charleston Gray)cucwcgB216
CsaV3_3G037900Watermelon (97103) v1cucwmB208
CsaV3_3G037900Watermelon (97103) v1cucwmB277
CsaV3_3G037900Watermelon (97103) v2cucwmbB187
CsaV3_3G037900Watermelon (97103) v2cucwmbB198
CsaV3_3G037900Wax gourdcucwgoB327
CsaV3_3G037900Wax gourdcucwgoB337