CsaV3_3G031740 (gene) Cucumber (Chinese Long) v3

NameCsaV3_3G031740
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr3 : 27454924 .. 27456101 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTTATTTAAAAAATAAAAATATTATTTTTTTGGATTCTGGGTTATTCACTCAAATTCCATTTAAAACTCGCTTCAACGCTTCTTCCTCCTCCAAATGCCGTTCTCATTCTCCTCTGCTTCATTTTTGCTCCTCCATGGCGGATTCTTCAGAAAATATACCTCCCTCCAAATCCCCACTCCATTTCCTCTTCAGTTGCTTCCGATCTTCCTCCAAACTTCCTACGAAAAAGGCTTCTTCGATCGCCCCACGCATCCGCCGGACTTCGTCGCGTACTTTCCGATTCAAGAAATCCTCTGCAACTGTTCCGGTCGACGTCGCCGATCCATCTCATGATGAGCTCTCTTTTTTGCCGGAGTTCAAGAAATCGCCTCCACTGTCGTTCATTATGCCGAAAGCGCCACAGGTCGGAGGTGAGATCGTTGTGGATTCGTCACTAAAGCCGAGTCAAACTCGGAAGAAGCCCCATTCAACTCAGTCAAATTTCACGACGAAGAAACTCTCGCCGACGAGAAAAACAGCCGCGTTGTTGCACTCCGTATCTCTTCCTTCTCAGCAATTGACCCGCCAGAAATATTTTAAAAAACCAGTCTCTGGTCATCTCCCTGCCGCCGTCGCAACCACCTCCCCGGCGTTTTCAGACGGTAATAAACCGACCCCGAAGTTGCCTACGTATTATCCGGTCAAGAATTTCGATCGGGTGATTATGGTTGTTATTGTGGCGATTGTGATGCTGTGGGGACGACTATGCGCCATACTCTGCACAACAGCGCTGTTCTACTTGGGACGTCGAATGAGATCGGAAATCGAACCGGACGGCGGCGGCAGCGGCAGAGGTAGGCTTAGCGGGAATTCTTGAGAGGATTAGGCGAAAATACGTTGGTGAATTGAACACGGTTACGGAAAACCGCCATGCGAGAGAAGGTTGGAGAAGAGGTTTTCTTTGAATGACGGAAGAGAGATGGTGTTATTTTTGTAAATTTAATGGTCAGTGGTGTTTAAACTCTGTAAAAAACTAATAATTTGACTAATTCATAAAATTATTTTTTTTTTTTTCTCTTGTATTTTTTGTGGATTTATTCTATAGTCTTCTTTCTACATTTCTACTTTCTTTTTCTTTCTTTCTTATTGAGATCCAGTTGAAAGCATATAACATAAATAAAGTGTAGATAATCAAAT

mRNA sequence

ATGGCGGATTCTTCAGAAAATATACCTCCCTCCAAATCCCCACTCCATTTCCTCTTCAGTTGCTTCCGATCTTCCTCCAAACTTCCTACGAAAAAGGCTTCTTCGATCGCCCCACGCATCCGCCGGACTTCGTCGCGTACTTTCCGATTCAAGAAATCCTCTGCAACTGTTCCGGTCGACGTCGCCGATCCATCTCATGATGAGCTCTCTTTTTTGCCGGAGTTCAAGAAATCGCCTCCACTGTCGTTCATTATGCCGAAAGCGCCACAGGTCGGAGGTGAGATCGTTGTGGATTCGTCACTAAAGCCGAGTCAAACTCGGAAGAAGCCCCATTCAACTCAGTCAAATTTCACGACGAAGAAACTCTCGCCGACGAGAAAAACAGCCGCGTTGTTGCACTCCGTATCTCTTCCTTCTCAGCAATTGACCCGCCAGAAATATTTTAAAAAACCAGTCTCTGGTCATCTCCCTGCCGCCGTCGCAACCACCTCCCCGGCGTTTTCAGACGGTAATAAACCGACCCCGAAGTTGCCTACGTATTATCCGGTCAAGAATTTCGATCGGGTGATTATGGTTGTTATTGTGGCGATTGTGATGCTGTGGGGACGACTATGCGCCATACTCTGCACAACAGCGCTGTTCTACTTGGGACGTCGAATGAGATCGGAAATCGAACCGGACGGCGGCGGCAGCGGCAGAGGTAGGCTTAGCGGGAATTCTTGA

Coding sequence (CDS)

ATGGCGGATTCTTCAGAAAATATACCTCCCTCCAAATCCCCACTCCATTTCCTCTTCAGTTGCTTCCGATCTTCCTCCAAACTTCCTACGAAAAAGGCTTCTTCGATCGCCCCACGCATCCGCCGGACTTCGTCGCGTACTTTCCGATTCAAGAAATCCTCTGCAACTGTTCCGGTCGACGTCGCCGATCCATCTCATGATGAGCTCTCTTTTTTGCCGGAGTTCAAGAAATCGCCTCCACTGTCGTTCATTATGCCGAAAGCGCCACAGGTCGGAGGTGAGATCGTTGTGGATTCGTCACTAAAGCCGAGTCAAACTCGGAAGAAGCCCCATTCAACTCAGTCAAATTTCACGACGAAGAAACTCTCGCCGACGAGAAAAACAGCCGCGTTGTTGCACTCCGTATCTCTTCCTTCTCAGCAATTGACCCGCCAGAAATATTTTAAAAAACCAGTCTCTGGTCATCTCCCTGCCGCCGTCGCAACCACCTCCCCGGCGTTTTCAGACGGTAATAAACCGACCCCGAAGTTGCCTACGTATTATCCGGTCAAGAATTTCGATCGGGTGATTATGGTTGTTATTGTGGCGATTGTGATGCTGTGGGGACGACTATGCGCCATACTCTGCACAACAGCGCTGTTCTACTTGGGACGTCGAATGAGATCGGAAATCGAACCGGACGGCGGCGGCAGCGGCAGAGGTAGGCTTAGCGGGAATTCTTGA

Protein sequence

MADSSENIPPSKSPLHFLFSCFRSSSKLPTKKASSIAPRIRRTSSRTFRFKKSSATVPVDVADPSHDELSFLPEFKKSPPLSFIMPKAPQVGGEIVVDSSLKPSQTRKKPHSTQSNFTTKKLSPTRKTAALLHSVSLPSQQLTRQKYFKKPVSGHLPAAVATTSPAFSDGNKPTPKLPTYYPVKNFDRVIMVVIVAIVMLWGRLCAILCTTALFYLGRRMRSEIEPDGGGSGRGRLSGNS
BLAST of CsaV3_3G031740 vs. NCBI nr
Match: KGN58547.1 (hypothetical protein Csa_3G680630 [Cucumis sativus])

HSP 1 Score: 464.5 bits (1194), Expect = 2.1e-127
Identity = 240/240 (100.00%), Postives = 240/240 (100.00%), Query Frame = 0

Query: 1   MADSSENIPPSKSPLHFLFSCFRSSSKLPTKKASSIAPRIRRTSSRTFRFKKSSATVPVD 60
           MADSSENIPPSKSPLHFLFSCFRSSSKLPTKKASSIAPRIRRTSSRTFRFKKSSATVPVD
Sbjct: 1   MADSSENIPPSKSPLHFLFSCFRSSSKLPTKKASSIAPRIRRTSSRTFRFKKSSATVPVD 60

Query: 61  VADPSHDELSFLPEFKKSPPLSFIMPKAPQVGGEIVVDSSLKPSQTRKKPHSTQSNFTTK 120
           VADPSHDELSFLPEFKKSPPLSFIMPKAPQVGGEIVVDSSLKPSQTRKKPHSTQSNFTTK
Sbjct: 61  VADPSHDELSFLPEFKKSPPLSFIMPKAPQVGGEIVVDSSLKPSQTRKKPHSTQSNFTTK 120

Query: 121 KLSPTRKTAALLHSVSLPSQQLTRQKYFKKPVSGHLPAAVATTSPAFSDGNKPTPKLPTY 180
           KLSPTRKTAALLHSVSLPSQQLTRQKYFKKPVSGHLPAAVATTSPAFSDGNKPTPKLPTY
Sbjct: 121 KLSPTRKTAALLHSVSLPSQQLTRQKYFKKPVSGHLPAAVATTSPAFSDGNKPTPKLPTY 180

Query: 181 YPVKNFDRVIMVVIVAIVMLWGRLCAILCTTALFYLGRRMRSEIEPDGGGSGRGRLSGNS 240
           YPVKNFDRVIMVVIVAIVMLWGRLCAILCTTALFYLGRRMRSEIEPDGGGSGRGRLSGNS
Sbjct: 181 YPVKNFDRVIMVVIVAIVMLWGRLCAILCTTALFYLGRRMRSEIEPDGGGSGRGRLSGNS 240

BLAST of CsaV3_3G031740 vs. NCBI nr
Match: XP_022949237.1 (uncharacterized protein LOC111452650 [Cucurbita moschata])

HSP 1 Score: 211.8 bits (538), Expect = 2.5e-51
Identity = 131/238 (55.04%), Postives = 159/238 (66.81%), Query Frame = 0

Query: 1   MADSSENIPPSKSPLHFLFSCFRSSSKLPTKKASSIAPRIRRTSSRTFRFKKSSATVPVD 60
           MA++SE + PSK PLHFL  CF SS K+ TKK  +   R  R  S  FRFKKSSATVP+D
Sbjct: 1   MAEASEKMSPSKRPLHFLLRCFGSSPKVQTKKNPTTGRRDSRIPSPRFRFKKSSATVPID 60

Query: 61  VADPS-----HDELSFLPEFKKSPPLSFIMPKAPQVGGEIVVDSSLKPSQTRKKPHSTQS 120
           VA P       D+ SF PEFKK PP   I  +AP V  +IV    +KPSQ  KK  ST+S
Sbjct: 61  VAVPEITVPCDDKASFSPEFKKPPPSPLIKSRAPTVRTKIV--ELIKPSQPWKKTESTRS 120

Query: 121 NFTTKKLSPTRKTAALLHSVSLPSQQLTRQKYFKKPVSGHLPAAVATTSPAFSDGNKPTP 180
           +F    L+P ++TAALLHS+SLPS++L RQK FKK VS HL +AV T +P  S+  KP  
Sbjct: 121 DF----LTPAKRTAALLHSISLPSRRLNRQKDFKKTVS-HL-SAVKTPTPTSSERRKPAD 180

Query: 181 KLPTYYPVKNFDRVIMVVIVAIVMLWGRLCAILCTTALFYLGRRMRSEIEPDGGGSGR 234
           K P   P K  D +I++V VAIV+LWG+LCAILCTTALFY  RR+RSE E +GGG  R
Sbjct: 181 KPPMNSPAKILDLIIVIVAVAIVVLWGQLCAILCTTALFYFCRRLRSETELEGGGEMR 230

BLAST of CsaV3_3G031740 vs. NCBI nr
Match: XP_022934627.1 (uncharacterized protein LOC111441760 [Cucurbita moschata] >XP_022934628.1 uncharacterized protein LOC111441760 [Cucurbita moschata] >XP_022934629.1 uncharacterized protein LOC111441760 [Cucurbita moschata])

HSP 1 Score: 151.4 bits (381), Expect = 4.0e-33
Identity = 116/245 (47.35%), Postives = 134/245 (54.69%), Query Frame = 0

Query: 1   MADSSENIPPSKSPLHFLFSCFRSSSKLPTKKASSIAPRIRRTSSRTFRFKKSSATVPVD 60
           MA+SS+     K  LHFLF CFRSS  +  +KA  IA   RRT S  FRFKKSSATVP+D
Sbjct: 1   MAESSD-----KPRLHFLFRCFRSSPNVQRQKAHPIASPNRRTPSLRFRFKKSSATVPLD 60

Query: 61  VADPSHDELSFLPEFKKSPPLSFIMPKAPQVGGEIVVDS---SLKPSQTRKKPHSTQSNF 120
            A P HDELS  PEF   PP        P + GEI+VDS   ++KPS+TRKK      + 
Sbjct: 61  AAVPCHDELSLSPEFNTPPP-------PPLIKGEIIVDSGCKTIKPSKTRKK------SX 120

Query: 121 TTKKLSPTRKTAALLHSVSLPSQQLTRQKYFKKPVSGHLPAAVA--TTSPAFSDGNKPTP 180
                                       K  KK +S HLP A A  TTS   SD  KP  
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXKGLKKSIS-HLPTAAAALTTSLPSSDRWKP-- 180

Query: 181 KLPTYYPVKNFDRVIMVVIVAIVMLWGRLCAILCTTALFYLGRRMRSEIEPD---GGGSG 238
             PT  P K FD VI++V VAIV+LWGRLCAILCT ALFYL R +RS+ E D    GG  
Sbjct: 181 --PTNSPNKKFDLVIVIVAVAIVVLWGRLCAILCTAALFYLRRCLRSKAELDVVIHGGGA 222

BLAST of CsaV3_3G031740 vs. NCBI nr
Match: XP_022982640.1 (uncharacterized protein LOC111481455 [Cucurbita maxima] >XP_022982641.1 uncharacterized protein LOC111481455 [Cucurbita maxima])

HSP 1 Score: 143.7 bits (361), Expect = 8.3e-31
Identity = 107/243 (44.03%), Postives = 127/243 (52.26%), Query Frame = 0

Query: 1   MADSSENIPPSKSPLHFLFSCFRSSSKLPTKKASSIAPRIRRTSSRTFRFKKSSATVPVD 60
           MA+SS+     K  LHFLF CFRSS  +  +KA  IA   RRT S  FRFKK SATVP+D
Sbjct: 1   MAESSD-----KPRLHFLFRCFRSSPNVQRQKAQQIASPNRRTPSLRFRFKKCSATVPLD 60

Query: 61  VADPSHDELSFLPEFKKSPPLSFIMPKAPQVGGEIVVDS---SLKPSQTRKKPHSTQSNF 120
            A P HDELSF PEF   PP S        + GEI+VDS   ++K S             
Sbjct: 61  AAVPCHDELSFSPEFNTPPPPS-------PIKGEIIVDSGCKTIKQSXXXXXXXXXXXXX 120

Query: 121 TTKKLSPTRKTAALLHSVSLPSQQLTRQKYFKKPVSGHLPAAVATTSPAFSDGNKPTPKL 180
                          HS          +K  KK +S HLP AVA   P  S  +  + K 
Sbjct: 121 XXXXXXXXXXXXXXXHS----------EKGLKKSIS-HLPIAVADADPTTSLASSDSWKA 180

Query: 181 PTYYPVKNFDRVIMVVIVAIVMLWGRLCAILCTTALFYLGRRMRSEIEPD---GGGSGRG 238
           PT  P   FD V ++V VAIV+LWGRLCAILCT ALFYL R +RS+ E D    GG   G
Sbjct: 181 PTNSPTIKFDLVTVIVAVAIVVLWGRLCAILCTAALFYLRRCLRSKAELDVVVDGGGAFG 220

BLAST of CsaV3_3G031740 vs. TrEMBL
Match: tr|A0A0A0LCZ2|A0A0A0LCZ2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G680630 PE=4 SV=1)

HSP 1 Score: 464.5 bits (1194), Expect = 1.4e-127
Identity = 240/240 (100.00%), Postives = 240/240 (100.00%), Query Frame = 0

Query: 1   MADSSENIPPSKSPLHFLFSCFRSSSKLPTKKASSIAPRIRRTSSRTFRFKKSSATVPVD 60
           MADSSENIPPSKSPLHFLFSCFRSSSKLPTKKASSIAPRIRRTSSRTFRFKKSSATVPVD
Sbjct: 1   MADSSENIPPSKSPLHFLFSCFRSSSKLPTKKASSIAPRIRRTSSRTFRFKKSSATVPVD 60

Query: 61  VADPSHDELSFLPEFKKSPPLSFIMPKAPQVGGEIVVDSSLKPSQTRKKPHSTQSNFTTK 120
           VADPSHDELSFLPEFKKSPPLSFIMPKAPQVGGEIVVDSSLKPSQTRKKPHSTQSNFTTK
Sbjct: 61  VADPSHDELSFLPEFKKSPPLSFIMPKAPQVGGEIVVDSSLKPSQTRKKPHSTQSNFTTK 120

Query: 121 KLSPTRKTAALLHSVSLPSQQLTRQKYFKKPVSGHLPAAVATTSPAFSDGNKPTPKLPTY 180
           KLSPTRKTAALLHSVSLPSQQLTRQKYFKKPVSGHLPAAVATTSPAFSDGNKPTPKLPTY
Sbjct: 121 KLSPTRKTAALLHSVSLPSQQLTRQKYFKKPVSGHLPAAVATTSPAFSDGNKPTPKLPTY 180

Query: 181 YPVKNFDRVIMVVIVAIVMLWGRLCAILCTTALFYLGRRMRSEIEPDGGGSGRGRLSGNS 240
           YPVKNFDRVIMVVIVAIVMLWGRLCAILCTTALFYLGRRMRSEIEPDGGGSGRGRLSGNS
Sbjct: 181 YPVKNFDRVIMVVIVAIVMLWGRLCAILCTTALFYLGRRMRSEIEPDGGGSGRGRLSGNS 240

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN58547.12.1e-127100.00hypothetical protein Csa_3G680630 [Cucumis sativus][more]
XP_022949237.12.5e-5155.04uncharacterized protein LOC111452650 [Cucurbita moschata][more]
XP_022934627.14.0e-3347.35uncharacterized protein LOC111441760 [Cucurbita moschata] >XP_022934628.1 unchar... [more]
XP_022982640.18.3e-3144.03uncharacterized protein LOC111481455 [Cucurbita maxima] >XP_022982641.1 uncharac... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0LCZ2|A0A0A0LCZ2_CUCSA1.4e-127100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G680630 PE=4 SV=1[more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G031740.1CsaV3_3G031740.1mRNA


Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 101..120

The following gene(s) are paralogous to this gene:

None