CsaV3_3G030170 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_3G030170
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	protein RALF-like 30
Location	chr3 : 25904553 .. 25905938 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CTAAAATTAACAATTTACTAAAGGTACGCATTTTGACTCAAATTTAATTTTGAAAAGGCTTATAAATAAGGAGATCAGAACACACACAAAAAAAAACAACACATCATCCACAAATCATCTAAAAAATTATTGTAAAGAAAAGAAAAGAAGAAGAGAAATTTTCTTGAAAAGAAATAAGATGAGGTCGTGGATGATATGTGTGGTTTTCATTAGCATGGTGGTGATGTTCCAAAATGTTGAAGCAGACAGAAAATATCTTAAATTTGTAGATTGTAATCAACCGAAGCCACCTCCATTTTGCGGACTTTTGAAATCAACCCAGCTAGTAGAACGTGGATGCTCGGCTCTCCCCAGTATCTGTCGTGGAAGTGGATCAGCAGCACGCCGACCCAATCCATAGGTTTTTGAAACAATTACCTTCTTCATGCATCCTAGTTGTTCCTTTTGGATTTTTGAGAAGTATATACAGAAAATGAATCTTCTAGGATGTACCAACTATTTCCCTTATTCATTTACCATAACTCATATGCAATCCCACCCTGATATTTATTTATCATGGAAGCAGAGACCAAAACAATGTATCACTTTCAAAGGTTAAATTGCAAATTTACTTCCACCCTCACATTTGTATCAATTTAGTTCTTCAAAACTAAAATTTACAATTCTACTACTCTAACTATCAAATTTCAACTTATCTAATTTATTTTTTCTTTCATTCAAAATTGTCAGGTCGGCATTAGAGGACAACCAAAATTTGATTGCCATATATTTCACTCCTACCTTTTTATTAATTCTCTCCAAATATATGTGTACATGTAATGTATATAATCTTCAACTATAGAAGCCCACAGCTATTAAATTACATTATTGAAAAGCATATCAAATGTAAATCAAAATTTGTCAAATAAATATATTTTTATGGGTAGCTCCAAAATTCTATAGAATTCAAATGATATAAGAATATGAATAAAAAGTAATAGTACGATAGAAATTAGTAATGTGAAAGGAAGATAAATAAATTGCAAAAGAATGGCTAAATTTGGCATTGGATATTTGGATGTTGGGTTTTGCATTTTATCTCCCTTTTACCTTTTACTTGTGGGTGGAGATTGAAATTGAAGTGTTGAAGAAGGCAGCACATCCAAGTTTTTGTATGGTATCCTTTTTGTTTTAATCTAATTTGTTTTGTATTTGATTGATTTTTAGTTTGATGTAGAGAGAGACAAGAAATAGATTGTTCATGTTTAGGTAAAAAATAATGATATTAATTTGCCAAACAAAATACATAATAATTAAAAGAGAAAAGAGTAAAAGAGAAAAGAAAAGTAGCCGTTAGGTGTAGCATAAATAAAAACGGGCGTTGAAAAAGTGGACCACGCGTTGATG

mRNA sequence

ATGAGGTCGTGGATGATATGTGTGGTTTTCATTAGCATGGTGGTGATGTTCCAAAATGTTGAAGCAGACAGAAAATATCTTAAATTTGTAGATTGTAATCAACCGAAGCCACCTCCATTTTGCGGACTTTTGAAATCAACCCAGCTAGTAGAACGTGGATGCTCGGCTCTCCCCAGTATCTGTCGTGGAAGTGGATCAGCAGCACGCCGACCCAATCCATAG

Coding sequence (CDS)

ATGAGGTCGTGGATGATATGTGTGGTTTTCATTAGCATGGTGGTGATGTTCCAAAATGTTGAAGCAGACAGAAAATATCTTAAATTTGTAGATTGTAATCAACCGAAGCCACCTCCATTTTGCGGACTTTTGAAATCAACCCAGCTAGTAGAACGTGGATGCTCGGCTCTCCCCAGTATCTGTCGTGGAAGTGGATCAGCAGCACGCCGACCCAATCCATAG

Protein sequence

MRSWMICVVFISMVVMFQNVEADRKYLKFVDCNQPKPPPFCGLLKSTQLVERGCSALPSICRGSGSAARRPNP

Homology

[Close]

BLAST of CsaV3_3G030170 vs. NCBI nr
Match: KGN61625.1 (hypothetical protein Csa_2G191310 [Cucumis sativus])

HSP 1 Score: 63.2 bits (152), Expect = 4.4e-07
Identity = 32/69 (46.38%), Postives = 44/69 (63.77%), Query Frame = 0


Query: 1  MRSWMICVVFISMVVMFQNVEADRKYLKFVD-CNQPKPPPFC---GLLKSTQLVERGCSA 60
          M+SW+IC+  I M+V+ Q V A+ K+LKF+D CNQP PPP C     ++      R CSA
Sbjct: 1  MKSWLICLALIGMLVVGQEVAAETKHLKFIDPCNQPSPPPTCPNRDKVEEANPYNRDCSA 60

Query: 61 LPSICRGSG 66
          + + CRG G
Sbjct: 61 I-NRCRGGG 68

[Close]

BLAST of CsaV3_3G030170 vs. NCBI nr
Match: XP_022947821.1 (protein RALF-like 10 [Cucurbita moschata])

HSP 1 Score: 60.5 bits (145), Expect = 2.9e-06
Identity = 31/66 (46.97%), Postives = 43/66 (65.15%), Query Frame = 0


Query: 1  MRSWMICVVFISMVVMFQNVEADRKYLKFVD-CNQPKPPPFCGLLKSTQL--VERGCSAL 60
          MRSW+IC+V I M+V+ Q+V ++ K+LKF D C QP PPP C +  +       RGCS +
Sbjct: 1  MRSWLICLVLIGMLVVSQDVASETKFLKFPDPCQQPNPPPGCSIGNAVPANPYRRGCSKI 60

Query: 61 PSICRG 64
           + CRG
Sbjct: 61 -TRCRG 65

[Close]

BLAST of CsaV3_3G030170 vs. NCBI nr
Match: KGN66777.1 (hypothetical protein Csa_1G690160 [Cucumis sativus])

HSP 1 Score: 60.1 bits (144), Expect = 3.7e-06
Identity = 34/68 (50.00%), Postives = 42/68 (61.76%), Query Frame = 0


Query: 1  MRSWMICVVFISMVVMFQNVEADRKYLKFVD-CNQPKPPPFCGLL----KSTQLVERGCS 60
          M+SW+ICVVFISM+VM Q V A   +LKF + C+ P PPP C         T   +RGCS
Sbjct: 1  MKSWLICVVFISMLVMSQEVGAQTNHLKFPNPCDLPSPPPSCSSKVKDHAPTNPYDRGCS 60

Query: 61 ALPSICRG 64
          A+   CRG
Sbjct: 61 AIHR-CRG 67

[Close]

BLAST of CsaV3_3G030170 vs. NCBI nr
Match: XP_023533089.1 (protein RALF-like 10 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 58.5 bits (140), Expect = 1.1e-05
Identity = 31/66 (46.97%), Postives = 42/66 (63.64%), Query Frame = 0


Query: 1  MRSWMICVVFISMVVMFQNVEADRKYLKFVD-CNQPKPPPFCGLLKSTQL--VERGCSAL 60
          MRSW+IC+V ISM+V+ Q V ++ K+LKF D C QP PP  C +  +       RGCS +
Sbjct: 1  MRSWLICIVLISMLVVSQEVASETKFLKFPDPCQQPNPPLGCSIGNAVPANPYRRGCSKI 60

Query: 61 PSICRG 64
           + CRG
Sbjct: 61 -TRCRG 65

[Close]

BLAST of CsaV3_3G030170 vs. NCBI nr
Match: XP_023533090.1 (protein RALF-like 11 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 53.5 bits (127), Expect = 3.5e-04
Identity = 24/44 (54.55%), Postives = 31/44 (70.45%), Query Frame = 0


Query: 1  MRSWMICVVFISMVVMFQNVEADRKYLKFVD-CNQPKPPPFCGL 44
          MRSW+IC+V I M V+ Q V ++ K+LKF D C QP PPP C +
Sbjct: 1  MRSWLICLVLIGMFVVSQEVASETKFLKFPDPCQQPNPPPGCSV 44

[Close]

BLAST of CsaV3_3G030170 vs. TrEMBL
Match: tr|A0A0A0LI94|A0A0A0LI94_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G191310 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.9e-07
Identity = 32/69 (46.38%), Postives = 44/69 (63.77%), Query Frame = 0


Query: 1  MRSWMICVVFISMVVMFQNVEADRKYLKFVD-CNQPKPPPFC---GLLKSTQLVERGCSA 60
          M+SW+IC+  I M+V+ Q V A+ K+LKF+D CNQP PPP C     ++      R CSA
Sbjct: 1  MKSWLICLALIGMLVVGQEVAAETKHLKFIDPCNQPSPPPTCPNRDKVEEANPYNRDCSA 60

Query: 61 LPSICRGSG 66
          + + CRG G
Sbjct: 61 I-NRCRGGG 68

[Close]

BLAST of CsaV3_3G030170 vs. TrEMBL
Match: tr|A0A0A0M0X3|A0A0A0M0X3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G690160 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.5e-06
Identity = 34/68 (50.00%), Postives = 42/68 (61.76%), Query Frame = 0


Query: 1  MRSWMICVVFISMVVMFQNVEADRKYLKFVD-CNQPKPPPFCGLL----KSTQLVERGCS 60
          M+SW+ICVVFISM+VM Q V A   +LKF + C+ P PPP C         T   +RGCS
Sbjct: 1  MKSWLICVVFISMLVMSQEVGAQTNHLKFPNPCDLPSPPPSCSSKVKDHAPTNPYDRGCS 60

Query: 61 ALPSICRG 64
          A+   CRG
Sbjct: 61 AIHR-CRG 67

[Close]

BLAST of CsaV3_3G030170 vs. TrEMBL
Match: tr|A0A1S4DY33|A0A1S4DY33_CUCME (protein RALF-like 30 OS=Cucumis melo OX=3656 GN=LOC107991083 PE=4 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 6.7e-04
Identity = 30/67 (44.78%), Postives = 39/67 (58.21%), Query Frame = 0


Query: 1  MRSWMICVVFISMVVMFQNVEADRKYLKFVD-CNQPKPPPFC---GLLKSTQLVERGCSA 60
          M+SW+IC   +SM+VM   V A  K+LKF+D C QP PP  C     + S    +RGCS 
Sbjct: 1  MKSWLICFALLSMLVMGHEVAAKTKFLKFLDPCLQPSPPRSCYKHERVDSPIAYDRGCSP 60

Query: 61 LPSICRG 64
          +   CRG
Sbjct: 61 ILR-CRG 66

The following BLAST results are available for this feature:

BLAST of CsaV3_3G030170 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN61625.1	4.4e-07	46.38	hypothetical protein Csa_2G191310 [Cucumis sativus]	[more]
XP_022947821.1	2.9e-06	46.97	protein RALF-like 10 [Cucurbita moschata]	[more]
KGN66777.1	3.7e-06	50.00	hypothetical protein Csa_1G690160 [Cucumis sativus]	[more]
XP_023533089.1	1.1e-05	46.97	protein RALF-like 10 [Cucurbita pepo subsp. pepo]	[more]
XP_023533090.1	3.5e-04	54.55	protein RALF-like 11 [Cucurbita pepo subsp. pepo]	[more]

BLAST of CsaV3_3G030170 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G030170 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G030170 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LI94\|A0A0A0LI94_CUCSA	2.9e-07	46.38	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G191310 PE=4 SV=1	[more]
tr\|A0A0A0M0X3\|A0A0A0M0X3_CUCSA	2.5e-06	50.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G690160 PE=4 SV=1	[more]
tr\|A0A1S4DY33\|A0A1S4DY33_CUCME	6.7e-04	44.78	protein RALF-like 30 OS=Cucumis melo OX=3656 GN=LOC107991083 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0051276	chromosome organization
biological_process	GO:0006259	DNA metabolic process
biological_process	GO:0044763	single-organism cellular process
biological_process	GO:0044710	single-organism metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0004386	helicase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G030170.1	CsaV3_3G030170.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_3G030170	Cucsa.150000	Cucumber (Gy14) v1	cgycucB227
CsaV3_3G030170	Cp4.1LG15g01560	Cucurbita pepo (Zucchini)	cpecucB0297
CsaV3_3G030170	MELO3C030887.2	Melon (DHL92) v3.6.1	cucmedB199

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_3G030170	Silver-seed gourd	carcucB0819
CsaV3_3G030170	Cucumber (Gy14) v2	cgybcucB117
CsaV3_3G030170	Cucurbita maxima (Rimu)	cmacucB0614
CsaV3_3G030170	Cucurbita maxima (Rimu)	cmacucB0716
CsaV3_3G030170	Cucurbita moschata (Rifu)	cmocucB0598
CsaV3_3G030170	Cucurbita moschata (Rifu)	cmocucB0703
CsaV3_3G030170	Cucurbita pepo (Zucchini)	cpecucB0893
CsaV3_3G030170	Wild cucumber (PI 183967)	cpicucB144
CsaV3_3G030170	Bottle gourd (USVL1VR-Ls)	cuclsiB219
CsaV3_3G030170	Melon (DHL92) v3.5.1	cucmeB206
CsaV3_3G030170	Watermelon (Charleston Gray)	cucwcgB258
CsaV3_3G030170	Watermelon (97103) v1	cucwmB234
CsaV3_3G030170	Watermelon (97103) v2	cucwmbB238
CsaV3_3G030170	Wax gourd	cucwgoB311