Cp4.1LG15g01560 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG15g01560
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG15 : 1267138 .. 1267377 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGTTGTGGATGATATGCTTAGTTTTGATTAGCATGGTGGTGATGGCCCGAGCAGATGAAGAGGAGAGTAAACCCATTGAGTTTTTGAATTGCAATCAACCAAAGCCTCCTCCGGCTTGCCTTGAAATAATACATAGGAGATTTCCCCGCCCTCCCTTACATGATGACCGTGGTTGCAACGCAATTACCCGTTGTCGTGGAGGAATTGGATCAGGTAGACCACCACCGCACATTTGA

mRNA sequence

ATGAAGTTGTGGATGATATGCTTAGTTTTGATTAGCATGGTGGTGATGGCCCGAGCAGATGAAGAGGAGAGTAAACCCATTGAGTTTTTGAATTGCAATCAACCAAAGCCTCCTCCGGCTTGCCTTGAAATAATACATAGGAGATTTCCCCGCCCTCCCTTACATGATGACCGTGGTTGCAACGCAATTACCCGTTGTCGTGGAGGAATTGGATCAGGTAGACCACCACCGCACATTTGA

Coding sequence (CDS)

ATGAAGTTGTGGATGATATGCTTAGTTTTGATTAGCATGGTGGTGATGGCCCGAGCAGATGAAGAGGAGAGTAAACCCATTGAGTTTTTGAATTGCAATCAACCAAAGCCTCCTCCGGCTTGCCTTGAAATAATACATAGGAGATTTCCCCGCCCTCCCTTACATGATGACCGTGGTTGCAACGCAATTACCCGTTGTCGTGGAGGAATTGGATCAGGTAGACCACCACCGCACATTTGA

Protein sequence

MKLWMICLVLISMVVMARADEEESKPIEFLNCNQPKPPPACLEIIHRRFPRPPLHDDRGCNAITRCRGGIGSGRPPPHI
Homology
[Close]
BLAST of Cp4.1LG15g01560 vs. TrEMBL
Match: A0A0A0M0X3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G690160 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 6.4e-07
Identity = 31/69 (44.93%), Postives = 44/69 (63.77%), Query Frame = 1 

Query: 1  MKLWMICLVLISMVVMARADEEESKPIEFLN-CNQPKPPPACLEIIHRRFPRPPLHDDRG 60
          MK W+IC+V ISM+VM++    ++  ++F N C+ P PPP+C   +    P  P   DRG
Sbjct: 1  MKSWLICVVFISMLVMSQEVGAQTNHLKFPNPCDLPSPPPSCSSKVKDHAPTNPY--DRG 60

Query: 61 CNAITRCRG 69
          C+AI RCRG
Sbjct: 61 CSAIHRCRG 67

[Close]
BLAST of Cp4.1LG15g01560 vs. TrEMBL
Match: A0A0A0LI94_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G191310 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 4.1e-06
Identity = 31/70 (44.29%), Postives = 42/70 (60.00%), Query Frame = 1 

Query: 1  MKLWMICLVLISMVVMARADEEESKPIEFLN-CNQPKPPPACLEIIHRRFPRPPLHDDRG 60
          MK W+ICL LI M+V+ +    E+K ++F++ CNQP PPP C          P    +R 
Sbjct: 1  MKSWLICLALIGMLVVGQEVAAETKHLKFIDPCNQPSPPPTCPNRDKVEEANP---YNRD 60

Query: 61 CNAITRCRGG 70
          C+AI RCRGG
Sbjct: 61 CSAINRCRGG 67

[Close]
BLAST of Cp4.1LG15g01560 vs. NCBI nr
Match: gi|700211681|gb|KGN66777.1| (hypothetical protein Csa_1G690160 [Cucumis sativus])

HSP 1 Score: 61.2 bits (147), Expect = 9.2e-07
Identity = 31/69 (44.93%), Postives = 44/69 (63.77%), Query Frame = 1 

Query: 1  MKLWMICLVLISMVVMARADEEESKPIEFLN-CNQPKPPPACLEIIHRRFPRPPLHDDRG 60
          MK W+IC+V ISM+VM++    ++  ++F N C+ P PPP+C   +    P  P   DRG
Sbjct: 1  MKSWLICVVFISMLVMSQEVGAQTNHLKFPNPCDLPSPPPSCSSKVKDHAPTNPY--DRG 60

Query: 61 CNAITRCRG 69
          C+AI RCRG
Sbjct: 61 CSAIHRCRG 67

[Close]
BLAST of Cp4.1LG15g01560 vs. NCBI nr
Match: gi|700206506|gb|KGN61625.1| (hypothetical protein Csa_2G191310 [Cucumis sativus])

HSP 1 Score: 58.5 bits (140), Expect = 6.0e-06
Identity = 31/70 (44.29%), Postives = 42/70 (60.00%), Query Frame = 1 

Query: 1  MKLWMICLVLISMVVMARADEEESKPIEFLN-CNQPKPPPACLEIIHRRFPRPPLHDDRG 60
          MK W+ICL LI M+V+ +    E+K ++F++ CNQP PPP C          P    +R 
Sbjct: 1  MKSWLICLALIGMLVVGQEVAAETKHLKFIDPCNQPSPPPTCPNRDKVEEANP---YNRD 60

Query: 61 CNAITRCRGG 70
          C+AI RCRGG
Sbjct: 61 CSAINRCRGG 67

The following BLAST results are available for this feature:
BLAST of Cp4.1LG15g01560 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG15g01560 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0M0X3_CUCSA6.4e-0744.93Uncharacterized protein OS=Cucumis sativus GN=Csa_1G690160 PE=4 SV=1[more]
A0A0A0LI94_CUCSA4.1e-0644.29Uncharacterized protein OS=Cucumis sativus GN=Csa_2G191310 PE=4 SV=1[more]
BLAST of Cp4.1LG15g01560 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG15g01560 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700211681|gb|KGN66777.1|9.2e-0744.93hypothetical protein Csa_1G690160 [Cucumis sativus][more]
gi|700206506|gb|KGN61625.1|6.0e-0644.29hypothetical protein Csa_2G191310 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG15g01560.1Cp4.1LG15g01560.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG15g01560CmoCh19G001980Cucurbita moschata (Rifu)cmocpeB481
Cp4.1LG15g01560MELO3C030887.2Melon (DHL92) v3.6.1cpemedB268
Cp4.1LG15g01560CsaV3_3G030170Cucumber (Chinese Long) v3cpecucB0297
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG15g01560Cucurbita pepo (Zucchini)cpecpeB273
Cp4.1LG15g01560Cucumber (Gy14) v1cgycpeB0399
Cp4.1LG15g01560Cucurbita maxima (Rimu)cmacpeB522
Cp4.1LG15g01560Cucurbita maxima (Rimu)cmacpeB615
Cp4.1LG15g01560Cucurbita moschata (Rifu)cmocpeB564
Cp4.1LG15g01560Wild cucumber (PI 183967)cpecpiB242
Cp4.1LG15g01560Cucumber (Chinese Long) v2cpecuB238
Cp4.1LG15g01560Bottle gourd (USVL1VR-Ls)cpelsiB209
Cp4.1LG15g01560Watermelon (Charleston Gray)cpewcgB240
Cp4.1LG15g01560Watermelon (97103) v1cpewmB258
Cp4.1LG15g01560Melon (DHL92) v3.5.1cpemeB229
Cp4.1LG15g01560Cucumber (Gy14) v2cgybcpeB331
Cp4.1LG15g01560Silver-seed gourdcarcpeB1094
Cp4.1LG15g01560Wax gourdcpewgoB0327