CsaV3_3G029850 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G029850
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr3 : 25594981 .. 25596269 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GAAACAAATAATAAATTCAAAACTTTTAATTTTATTTGACCGTAATAAAAAAAAAATTAAAAAATATTAAGGGGCTTTCAATTTTCATTTAAGTCTCCACGTCAAGTTTGGCTATGGTTCTTTCTCAGACAAATTAAATGTGCATCGAATTTCAAATCTTCTCTGCTTTTTTTTTCACTTTGCCTTTTTCTCCTTTTTATCTCTCTCTCTCTCTCTCTTTCATGGGTATTTGAACCTCCACCATCCTCTTCATAACCTTAATCTTTCTCCACAATTTGCATGGCCGCAGCAACTATTTCAACATCACCAATTTCTCAATCCCTTAAACAATCTCACACTCAACATCATTATCATCATCTCTTTCACCTAATTCCATCTCTAACTCTTCTCTTCCTCTTTCTCACAATCACCATCCTCGGTAGCCCTTCCATGGCTGCCTTGGAGCCCACGAACTCTGAGTCGGAATCCACAGGCACAAGGCGGAGAGATGATCTTCGTTTTGAATCTGCAGTTTTACAGGTTCCGAGCGGACTGAAACCTACTTCGAACAATTTGTTGCAGAAACAGAGGTTGGCGTCCGAATCCTGCAGCAGACTGCGGAGAGACTATCGTCGTTTTGAATCTGACGAATCGAAACCCATTTCCAACATTCCGATGCAGAAACTGGTGTCGGAGTCAGAATTAAACGGCAGGCGGTGGAGAGGCTATCGTCGGTTTGAATCTGCTGCGAGCGGAACGAAACCTAGTTCGAACAATCCGCCGCGGAAAAAGAGATTGAAGTTGGAATCTAGCGGTAGGCGGTGGAGAGACTATCGTCGATTTCAATCCGCAGTTCTCAAAGTTCCAACCGGCAAAAGGAATCACGCTTCGAACAATCCGCCGCTGAAACAGAAGCCGAACTCGGAATCCGGCGACAGGCGGAGGAGAAATGACCATCTATTTGAATCTGCGGCGCATGAAGTTCCGAGTGGGCCGAATCCGATTTCGAACTAACAAAAACAGAATTTTGTCAATGGGCGGTTTTGAGCGAAGACGTGGAAGTGTTTTTCTTCTGTAAATGAATGGCGAGCTGCAATGATTTTTTCATCTTCGCATGGATACTAACTGATCGACAAGAACAACCGAATCCGCCATTGAAGCGTCTCCTTTACACTGCTCTTCATCTCAATTTTTAATCTTCTTTTCTTCTTTCTTCCCTGTTTCTGTGTGGTTTGTTATTTATATATATAAACATATAGAGAGAGTTCATATTCGCAATATATAAATATATATTTAAACTGTCTTAGATA

mRNA sequence

ATGGCCGCAGCAACTATTTCAACATCACCAATTTCTCAATCCCTTAAACAATCTCACACTCAACATCATTATCATCATCTCTTTCACCTAATTCCATCTCTAACTCTTCTCTTCCTCTTTCTCACAATCACCATCCTCGGTAGCCCTTCCATGGCTGCCTTGGAGCCCACGAACTCTGAGTCGGAATCCACAGGCACAAGGCGGAGAGATGATCTTCGTTTTGAATCTGCAGTTTTACAGGTTCCGAGCGGACTGAAACCTACTTCGAACAATTTGTTGCAGAAACAGAGGTTGGCGTCCGAATCCTGCAGCAGACTGCGGAGAGACTATCGTCGTTTTGAATCTGACGAATCGAAACCCATTTCCAACATTCCGATGCAGAAACTGGTGTCGGAGTCAGAATTAAACGGCAGGCGGTGGAGAGGCTATCGTCGGTTTGAATCTGCTGCGAGCGGAACGAAACCTAGTTCGAACAATCCGCCGCGGAAAAAGAGATTGAAGTTGGAATCTAGCGGTAGGCGGAGGAGAAATGACCATCTATTTGAATCTGCGGCGCATGAAGTTCCGAGTGGGCCGAATCCGATTTCGAACTAA

Coding sequence (CDS)

ATGGCCGCAGCAACTATTTCAACATCACCAATTTCTCAATCCCTTAAACAATCTCACACTCAACATCATTATCATCATCTCTTTCACCTAATTCCATCTCTAACTCTTCTCTTCCTCTTTCTCACAATCACCATCCTCGGTAGCCCTTCCATGGCTGCCTTGGAGCCCACGAACTCTGAGTCGGAATCCACAGGCACAAGGCGGAGAGATGATCTTCGTTTTGAATCTGCAGTTTTACAGGTTCCGAGCGGACTGAAACCTACTTCGAACAATTTGTTGCAGAAACAGAGGTTGGCGTCCGAATCCTGCAGCAGACTGCGGAGAGACTATCGTCGTTTTGAATCTGACGAATCGAAACCCATTTCCAACATTCCGATGCAGAAACTGGTGTCGGAGTCAGAATTAAACGGCAGGCGGTGGAGAGGCTATCGTCGGTTTGAATCTGCTGCGAGCGGAACGAAACCTAGTTCGAACAATCCGCCGCGGAAAAAGAGATTGAAGTTGGAATCTAGCGGTAGGCGGAGGAGAAATGACCATCTATTTGAATCTGCGGCGCATGAAGTTCCGAGTGGGCCGAATCCGATTTCGAACTAA

Protein sequence

MAAATISTSPISQSLKQSHTQHHYHHLFHLIPSLTLLFLFLTITILGSPSMAALEPTNSESESTGTRRRDDLRFESAVLQVPSGLKPTSNNLLQKQRLASESCSRLRRDYRRFESDESKPISNIPMQKLVSESELNGRRWRGYRRFESAASGTKPSSNNPPRKKRLKLESSGRRRRNDHLFESAAHEVPSGPNPISN
Homology
[Close]
BLAST of CsaV3_3G029850 vs. NCBI nr
Match: KGN58351.1 (hypothetical protein Csa_3G626150 [Cucumis sativus])

HSP 1 Score: 186.8 bits (473), Expect = 7.1e-44
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0 

Query: 1   MAAATISTSPISQSLKQXXXXXXXXXXXXXXPSLTLLFXFLTITILGSPSMAALEPTNSE 60
           MAAATISTSPISQSLKQXXXXXXXXXXXXXXPSLTLLFXFLTITILGSPSMAALEPTNSE
Sbjct: 1   MAAATISTSPISQSLKQXXXXXXXXXXXXXXPSLTLLFXFLTITILGSPSMAALEPTNSE 60

Query: 61  SESTGTRRRDDLRFESAVLQVPSGLKPTSNNLLQKQRLASESCSRLRRDYRRFESDES 119
           SESTGTRRRDDLRFESAVLQVPSGLKPTSNNLLQKQRLASESCSRLRRDYRRFESDES
Sbjct: 61  SESTGTRRRDDLRFESAVLQVPSGLKPTSNNLLQKQRLASESCSRLRRDYRRFESDES 118

[Close]
BLAST of CsaV3_3G029850 vs. TrEMBL
Match: tr|A0A0A0LE33|A0A0A0LE33_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G626150 PE=4 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 4.7e-44
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0 

Query: 1   MAAATISTSPISQSLKQXXXXXXXXXXXXXXPSLTLLFXFLTITILGSPSMAALEPTNSE 60
           MAAATISTSPISQSLKQXXXXXXXXXXXXXXPSLTLLFXFLTITILGSPSMAALEPTNSE
Sbjct: 1   MAAATISTSPISQSLKQXXXXXXXXXXXXXXPSLTLLFXFLTITILGSPSMAALEPTNSE 60

Query: 61  SESTGTRRRDDLRFESAVLQVPSGLKPTSNNLLQKQRLASESCSRLRRDYRRFESDES 119
           SESTGTRRRDDLRFESAVLQVPSGLKPTSNNLLQKQRLASESCSRLRRDYRRFESDES
Sbjct: 61  SESTGTRRRDDLRFESAVLQVPSGLKPTSNNLLQKQRLASESCSRLRRDYRRFESDES 118

The following BLAST results are available for this feature:
BLAST of CsaV3_3G029850 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN58351.17.1e-44100.00hypothetical protein Csa_3G626150 [Cucumis sativus][more]
BLAST of CsaV3_3G029850 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G029850 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G029850 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LE33|A0A0A0LE33_CUCSA4.7e-44100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G626150 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G029850.1CsaV3_3G029850.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 162..183
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 145..197

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_3G029850CSPI03G27380Wild cucumber (PI 183967)cpicucB144
CsaV3_3G029850CmaCh02G016870Cucurbita maxima (Rimu)cmacucB0716
CsaV3_3G029850CmoCh02G017310Cucurbita moschata (Rifu)cmocucB0703
CsaV3_3G029850CsGy3G025520Cucumber (Gy14) v2cgybcucB117
CsaV3_3G029850Cla002724Watermelon (97103) v1cucwmB234
CsaV3_3G029850ClCG07G001880Watermelon (Charleston Gray)cucwcgB258
CsaV3_3G029850Lsi05G011100Bottle gourd (USVL1VR-Ls)cuclsiB219
CsaV3_3G029850Cla97C07G130160Watermelon (97103) v2cucwmbB238
CsaV3_3G029850Bhi05G000065Wax gourdcucwgoB311
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_3G029850Cucumber (Chinese Long) v3cuccucB114
CsaV3_3G029850Cucumber (Chinese Long) v3cuccucB159
CsaV3_3G029850Silver-seed gourdcarcucB0819
CsaV3_3G029850Silver-seed gourdcarcucB1002
CsaV3_3G029850Cucumber (Gy14) v2cgybcucB125
CsaV3_3G029850Cucumber (Gy14) v2cgybcucB331
CsaV3_3G029850Cucumber (Gy14) v1cgycucB079
CsaV3_3G029850Cucumber (Gy14) v1cgycucB386
CsaV3_3G029850Cucurbita maxima (Rimu)cmacucB0287
CsaV3_3G029850Cucurbita maxima (Rimu)cmacucB0434
CsaV3_3G029850Cucurbita maxima (Rimu)cmacucB0614
CsaV3_3G029850Cucurbita maxima (Rimu)cmacucB0984
CsaV3_3G029850Cucurbita maxima (Rimu)cmacucB1058
CsaV3_3G029850Cucurbita moschata (Rifu)cmocucB0279
CsaV3_3G029850Cucurbita moschata (Rifu)cmocucB0429
CsaV3_3G029850Cucurbita moschata (Rifu)cmocucB0598
CsaV3_3G029850Cucurbita moschata (Rifu)cmocucB0967
CsaV3_3G029850Cucurbita moschata (Rifu)cmocucB1040
CsaV3_3G029850Cucurbita pepo (Zucchini)cpecucB0160
CsaV3_3G029850Cucurbita pepo (Zucchini)cpecucB0297
CsaV3_3G029850Cucurbita pepo (Zucchini)cpecucB0383
CsaV3_3G029850Cucurbita pepo (Zucchini)cpecucB0755
CsaV3_3G029850Cucurbita pepo (Zucchini)cpecucB0893
CsaV3_3G029850Cucurbita pepo (Zucchini)cpecucB1053
CsaV3_3G029850Wild cucumber (PI 183967)cpicucB156
CsaV3_3G029850Bottle gourd (USVL1VR-Ls)cuclsiB173
CsaV3_3G029850Bottle gourd (USVL1VR-Ls)cuclsiB196
CsaV3_3G029850Bottle gourd (USVL1VR-Ls)cuclsiB220
CsaV3_3G029850Melon (DHL92) v3.5.1cucmeB216
CsaV3_3G029850Melon (DHL92) v3.5.1cucmeB230
CsaV3_3G029850Melon (DHL92) v3.5.1cucmeB253
CsaV3_3G029850Melon (DHL92) v3.6.1cucmedB208
CsaV3_3G029850Melon (DHL92) v3.6.1cucmedB222
CsaV3_3G029850Melon (DHL92) v3.6.1cucmedB249
CsaV3_3G029850Watermelon (Charleston Gray)cucwcgB193
CsaV3_3G029850Watermelon (Charleston Gray)cucwcgB246
CsaV3_3G029850Watermelon (97103) v1cucwmB261
CsaV3_3G029850Watermelon (97103) v1cucwmB286
CsaV3_3G029850Watermelon (97103) v2cucwmbB224
CsaV3_3G029850Watermelon (97103) v2cucwmbB230
CsaV3_3G029850Wax gourdcucwgoB267