CmoCh02G017310 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh02G017310
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr02 : 9874383 .. 9874850 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCACAGCAAGCAGTTCAAGTTCGCCAAATTCTTCTAGTTCTCGTAATTTAATTCCATCTCTTACTCTTCTCTTTGTATTTCTCACTGCTGTCGTGCTCGGCAGCCCTTCCATGGCTGCCTCGGAGTCGCAGACACGTCTAATTCCACATTCCTTGAACAATCCGCCGCGAAAACATAGGTTGGAGTCGGAATCTGGCGGCCGAAGACCGAGAGACGATCGTCCACTTGAATCTGCGGTTTTCGAGGTTACGAGCGGAACGAATCATGTTTTGAACAATCCGCCGCGGAAACAGAGGTCGGACTCGGAGTCCGGCGGGCGAGGGAGGAGAAACGATCGCGATTCCAACAGTCCGCCGCGGCAACAATCGTTGGACAAGAAATCCGGCGGCCAGCGGAGAGACGATAGTCGATTTGAATCTGCGGCGCACGAAGTTCCGAGCGGGCCGAATCCTATTTCGAACTAG

mRNA sequence

ATGGCCACAGCAAGCAGTTCAAGTTCGCCAAATTCTTCTAGTTCTCGTAATTTAATTCCATCTCTTACTCTTCTCTTTGTATTTCTCACTGCTGTCGTGCTCGGCAGCCCTTCCATGGCTGCCTCGGAGTCGCAGACACGTCTAATTCCACATTCCTTGAACAATCCGCCGCGAAAACATAGGTTGGAGTCGGAATCTGGCGGCCGAAGACCGAGAGACGATCGTCCACTTGAATCTGCGGTTTTCGAGGTTACGAGCGGAACGAATCATGTTTTGAACAATCCGCCGCGGAAACAGAGGTCGGACTCGGAGTCCGGCGGGCGAGGGAGGAGAAACGATCGCGATTCCAACAGTCCGCCGCGGCAACAATCGTTGGACAAGAAATCCGGCGGCCAGCGGAGAGACGATAGTCGATTTGAATCTGCGGCGCACGAAGTTCCGAGCGGGCCGAATCCTATTTCGAACTAG

Coding sequence (CDS)

ATGGCCACAGCAAGCAGTTCAAGTTCGCCAAATTCTTCTAGTTCTCGTAATTTAATTCCATCTCTTACTCTTCTCTTTGTATTTCTCACTGCTGTCGTGCTCGGCAGCCCTTCCATGGCTGCCTCGGAGTCGCAGACACGTCTAATTCCACATTCCTTGAACAATCCGCCGCGAAAACATAGGTTGGAGTCGGAATCTGGCGGCCGAAGACCGAGAGACGATCGTCCACTTGAATCTGCGGTTTTCGAGGTTACGAGCGGAACGAATCATGTTTTGAACAATCCGCCGCGGAAACAGAGGTCGGACTCGGAGTCCGGCGGGCGAGGGAGGAGAAACGATCGCGATTCCAACAGTCCGCCGCGGCAACAATCGTTGGACAAGAAATCCGGCGGCCAGCGGAGAGACGATAGTCGATTTGAATCTGCGGCGCACGAAGTTCCGAGCGGGCCGAATCCTATTTCGAACTAG
Homology
[Close]
BLAST of CmoCh02G017310 vs. TrEMBL
Match: A0A0A0LE33_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G626150 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.3e-14
Identity = 57/105 (54.29%), Postives = 62/105 (59.05%), Query Frame = 1 

Query: 52  SLNNPPRKHRLESESGGRRPRDDRPLESAVFEVTSGT-NHVLNNPPRKQRSDSESGGRGR 111
           S NNPPRK RL+ ES GRR RD R  ESAV +V +G  NH  NNPP KQ+ +SESG R R
Sbjct: 156 SSNNPPRKKRLKLESSGRRWRDYRRFESAVLKVPTGKRNHASNNPPLKQKPNSESGDRRR 215

Query: 112 RNDRDSNSPPRQQSLDKKSGGQRRDDSRFESAAHEVPSGPNPISN 156
           RND                         FESAAHEVPSGPNPISN
Sbjct: 216 RNDH-----------------------LFESAAHEVPSGPNPISN 237

[Close]
BLAST of CmoCh02G017310 vs. NCBI nr
Match: gi|700203218|gb|KGN58351.1| (hypothetical protein Csa_3G626150 [Cucumis sativus])

HSP 1 Score: 87.8 bits (216), Expect = 1.8e-14
Identity = 57/105 (54.29%), Postives = 62/105 (59.05%), Query Frame = 1 

Query: 52  SLNNPPRKHRLESESGGRRPRDDRPLESAVFEVTSGT-NHVLNNPPRKQRSDSESGGRGR 111
           S NNPPRK RL+ ES GRR RD R  ESAV +V +G  NH  NNPP KQ+ +SESG R R
Sbjct: 156 SSNNPPRKKRLKLESSGRRWRDYRRFESAVLKVPTGKRNHASNNPPLKQKPNSESGDRRR 215

Query: 112 RNDRDSNSPPRQQSLDKKSGGQRRDDSRFESAAHEVPSGPNPISN 156
           RND                         FESAAHEVPSGPNPISN
Sbjct: 216 RNDH-----------------------LFESAAHEVPSGPNPISN 237

The following BLAST results are available for this feature:
BLAST of CmoCh02G017310 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh02G017310 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LE33_CUCSA1.3e-1454.29Uncharacterized protein OS=Cucumis sativus GN=Csa_3G626150 PE=4 SV=1[more]
BLAST of CmoCh02G017310 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh02G017310 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700203218|gb|KGN58351.1|1.8e-1454.29hypothetical protein Csa_3G626150 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh02G017310.1CmoCh02G017310.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh02G017310CmaCh02G016870Cucurbita maxima (Rimu)cmacmoB619
CmoCh02G017310Cla002724Watermelon (97103) v1cmowmB552
CmoCh02G017310Csa3G626150Cucumber (Chinese Long) v2cmocuB590
CmoCh02G017310ClCG07G001880Watermelon (Charleston Gray)cmowcgB566
CmoCh02G017310CSPI03G27380Wild cucumber (PI 183967)cmocpiB595
CmoCh02G017310Lsi05G011100Bottle gourd (USVL1VR-Ls)cmolsiB565
CmoCh02G017310CsaV3_3G029850Cucumber (Chinese Long) v3cmocucB0703
CmoCh02G017310Cla97C07G130160Watermelon (97103) v2cmowmbB631
CmoCh02G017310Bhi05G000065Wax gourdcmowgoB0725
CmoCh02G017310CsGy3G025520Cucumber (Gy14) v2cgybcmoB368
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh02G017310Cucurbita moschata (Rifu)cmocmoB213
CmoCh02G017310Cucurbita moschata (Rifu)cmocmoB303
CmoCh02G017310Cucurbita moschata (Rifu)cmocmoB387
CmoCh02G017310Cucurbita moschata (Rifu)cmocmoB437
CmoCh02G017310Cucurbita moschata (Rifu)cmocmoB446
CmoCh02G017310Cucumber (Gy14) v1cgycmoB0713
CmoCh02G017310Cucurbita maxima (Rimu)cmacmoB261
CmoCh02G017310Cucurbita maxima (Rimu)cmacmoB359
CmoCh02G017310Cucurbita maxima (Rimu)cmacmoB523
CmoCh02G017310Cucurbita maxima (Rimu)cmacmoB909
CmoCh02G017310Wild cucumber (PI 183967)cmocpiB588
CmoCh02G017310Watermelon (97103) v1cmowmB604
CmoCh02G017310Cucurbita pepo (Zucchini)cmocpeB549
CmoCh02G017310Cucurbita pepo (Zucchini)cmocpeB564
CmoCh02G017310Cucurbita pepo (Zucchini)cmocpeB580
CmoCh02G017310Cucurbita pepo (Zucchini)cmocpeB590
CmoCh02G017310Cucurbita pepo (Zucchini)cmocpeB596
CmoCh02G017310Cucurbita pepo (Zucchini)cmocpeB599
CmoCh02G017310Bottle gourd (USVL1VR-Ls)cmolsiB518
CmoCh02G017310Bottle gourd (USVL1VR-Ls)cmolsiB566
CmoCh02G017310Cucumber (Gy14) v2cgybcmoB362
CmoCh02G017310Melon (DHL92) v3.6.1cmomedB644
CmoCh02G017310Melon (DHL92) v3.6.1cmomedB648
CmoCh02G017310Silver-seed gourdcarcmoB0321
CmoCh02G017310Silver-seed gourdcarcmoB1057
CmoCh02G017310Silver-seed gourdcarcmoB1287
CmoCh02G017310Silver-seed gourdcarcmoB1450
CmoCh02G017310Cucumber (Chinese Long) v3cmocucB0695
CmoCh02G017310Watermelon (97103) v2cmowmbB622
CmoCh02G017310Watermelon (97103) v2cmowmbB627
CmoCh02G017310Wax gourdcmowgoB0710