CsaV3_3G028730 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_3G028730
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Zinc finger protein, putative
Location	chr3 : 25308349 .. 25308719 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAATATGAAGAAAGCCTTTCAAAAGTAGTTGAAATTGAAACCAACGACAACAATATTGTTGAAAAAGTAGTTGAAATGGAAGAAGCCCCATCAAGAGTTTTCCCCTGTTTGTTCTGTTCAAGAAAGTTTCAAAGCTCCCAAGCTTTAGGAGGCCATCAAAATGCTCATAAGAAAGAGAGGACTGCCGCAAGGAAAGCCAAGCGAATCTGCGATTACTCGGTGTCACCACCATCACCGTTCCCGGCACCGACATCGTTGGTTTTTGCAGCTAGCCAGCAGCAACATCATCCAGGGCTATTGCCACATCCTGTTTATATTGCTACTCATGGAGCTAATCTTCATTGTTTCCCTAATAACCAACAATTGTT

mRNA sequence

ATGGAATATGAAGAAAGCCTTTCAAAAGTAGTTGAAATTGAAACCAACGACAACAATATTGTTGAAAAAGTAGTTGAAATGGAAGAAGCCCCATCAAGAGTTTTCCCCTGTTTGTTCTGTTCAAGAAAGTTTCAAAGCTCCCAAGCTTTAGGAGGCCATCAAAATGCTCATAAGAAAGAGAGGACTGCCGCAAGGAAAGCCAAGCGAATCTGCGATTACTCGGTGTCACCACCATCACCGTTCCCGGCACCGACATCGTTGGTTTTTGCAGCTAGCCAGCAGCAACATCATCCAGGGCTATTGCCACATCCTGTTTATATTGCTACTCATGGAGCTAATCTTCATTGTTTCCCTAATAACCAACAATTGTT

Coding sequence (CDS)

ATGGAATATGAAGAAAGCCTTTCAAAAGTAGTTGAAATTGAAACCAACGACAACAATATTGTTGAAAAAGTAGTTGAAATGGAAGAAGCCCCATCAAGAGTTTTCCCCTGTTTGTTCTGTTCAAGAAAGTTTCAAAGCTCCCAAGCTTTAGGAGGCCATCAAAATGCTCATAAGAAAGAGAGGACTGCCGCAAGGAAAGCCAAGCGAATCTGCGATTACTCGGTGTCACCACCATCACCGTTCCCGGCACCGACATCGTTGGTTTTTGCAGCTAGCCAGCAGCAACATCATCCAGGGCTATTGCCACATCCTGTTTATATTGCTACTCATGGAGCTAATCTTCATTGTTTCCCTAATAACCAACAATTGTT

Protein sequence

MEYEESLSKVVEIETNDNNIVEKVVEMEEAPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRICDYSVSPPSPFPAPTSLVFAASQQQHHPGLLPHPVYIATHGANLHCFPNNQQLX

Homology

[Close]

BLAST of CsaV3_3G028730 vs. NCBI nr
Match: XP_008447640.1 (PREDICTED: protein LATE FLOWERING-like [Cucumis melo])

HSP 1 Score: 237.7 bits (605), Expect = 2.2e-59
Identity = 118/124 (95.16%), Postives = 121/124 (97.58%), Query Frame = 0


Query: 1   MEYEESLSKVVEIETNDNNIVEKVVEMEEAPSRVFPCLFCSRKFQSSQALGGHQNAHKKE 60
           MEYEESLSKVVEIETN+N+IVEKV+EMEE PSRVFPCLFCSRKFQSSQALGGHQNAHKKE
Sbjct: 1   MEYEESLSKVVEIETNNNDIVEKVLEMEETPSRVFPCLFCSRKFQSSQALGGHQNAHKKE 60

Query: 61  RTAARKAKRICDYSVSPPSPFPAPTSLVFAASQQQHHP-GLLPHPVYIATHGANLHCFPN 120
           RTAARKAKRICDYSVSPPSPF APTSLVFAASQQQHHP GLLPHPVYIATHGANLHCFPN
Sbjct: 61  RTAARKAKRICDYSVSPPSPFSAPTSLVFAASQQQHHPAGLLPHPVYIATHGANLHCFPN 120

Query: 121 NQQL 124
           NQQL
Sbjct: 121 NQQL 124

[Close]

BLAST of CsaV3_3G028730 vs. NCBI nr
Match: KGN58336.1 (hypothetical protein Csa_3G624040 [Cucumis sativus])

HSP 1 Score: 206.1 bits (523), Expect = 7.0e-50
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0


Query: 27  MEEAPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRICDYSVSPPSPFPAPTS 86
           MEEAPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRICDYSVSPPSPFPAPTS
Sbjct: 1   MEEAPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRICDYSVSPPSPFPAPTS 60

Query: 87  LVFAASQQQHHPGLLPHPVYIATHGANLHCFPNNQQL 124
           LVFAASQQQHHPGLLPHPVYIATHGANLHCFPNNQQL
Sbjct: 61  LVFAASQQQHHPGLLPHPVYIATHGANLHCFPNNQQL 97

[Close]

BLAST of CsaV3_3G028730 vs. NCBI nr
Match: XP_022931139.1 (protein LATE FLOWERING [Cucurbita moschata])

HSP 1 Score: 158.3 bits (399), Expect = 1.7e-35
Identity = 81/123 (65.85%), Postives = 90/123 (73.17%), Query Frame = 0


Query: 1   MEYEESLSKVVEIETNDNNIVEKVVEMEEAPSRVFPCLFCSRKFQSSQALGGHQNAHKKE 60
           ME EE   +V E  +         VEMEE PSR+FPCLFCSRKFQ+SQALGGHQNAHKKE
Sbjct: 1   MEDEEQPLQVAESSS---------VEMEETPSRIFPCLFCSRKFQTSQALGGHQNAHKKE 60

Query: 61  RTAARKAKRICDYSVSPPSPFPAPTSLVFAASQQQHHPGLLPHPVYIATHGANLHCFPNN 120
           RTA RKAKR+ DYS S  S   +    VFA +QQ HHP +LPHPVYIA HGANLHCFPNN
Sbjct: 61  RTAVRKAKRLSDYSSSSSSSLSSRPLSVFAGNQQLHHPAILPHPVYIAAHGANLHCFPNN 114

Query: 121 QQL 124
           QQ+
Sbjct: 121 QQV 114

[Close]

BLAST of CsaV3_3G028730 vs. NCBI nr
Match: XP_023532770.1 (protein LATE FLOWERING-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 156.8 bits (395), Expect = 4.9e-35
Identity = 76/99 (76.77%), Postives = 82/99 (82.83%), Query Frame = 0


Query: 25  VEMEEAPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRICDYSVSPPSPFPAP 84
           VEMEE PSR+FPCLFCSRKFQ+SQALGGHQNAHKKERTA RKAKRI DYS S  S  P  
Sbjct: 108 VEMEETPSRIFPCLFCSRKFQTSQALGGHQNAHKKERTAVRKAKRISDYSSSSTSSRPLS 167

Query: 85  TSLVFAASQQQHHPGLLPHPVYIATHGANLHCFPNNQQL 124
              VFA SQQ HHP +LPHP+YIA HGANLHCFPN+QQ+
Sbjct: 168 ---VFAGSQQLHHPAILPHPMYIAAHGANLHCFPNSQQV 203

[Close]

BLAST of CsaV3_3G028730 vs. NCBI nr
Match: XP_022996351.1 (protein LATE FLOWERING-like [Cucurbita maxima])

HSP 1 Score: 152.1 bits (383), Expect = 1.2e-33
Identity = 80/123 (65.04%), Postives = 89/123 (72.36%), Query Frame = 0


Query: 1   MEYEESLSKVVEIETNDNNIVEKVVEMEEAPSRVFPCLFCSRKFQSSQALGGHQNAHKKE 60
           ME EE   +V E  +         VEMEE PSR+FPCLFCSRKFQ+SQALGGHQNAHKKE
Sbjct: 95  MEDEEQPLQVAESSS---------VEMEETPSRIFPCLFCSRKFQTSQALGGHQNAHKKE 154

Query: 61  RTAARKAKRICDYSVSPPSPFPAPTSLVFAASQQQHHPGLLPHPVYIATHGANLHCFPNN 120
           RTA RKAKRI DYS S  S  P     VFA +QQ HHP +LPHP+YIA HG NLHCFPN+
Sbjct: 155 RTAVRKAKRISDYSSSSTSSRPLS---VFAGNQQLHHPAILPHPMYIAAHGPNLHCFPNS 205

Query: 121 QQL 124
           QQ+
Sbjct: 215 QQV 205

[Close]

BLAST of CsaV3_3G028730 vs. TAIR10
Match: AT5G48890.1 (C2H2-like zinc finger protein)

HSP 1 Score: 85.9 bits (211), Expect = 1.9e-17
Identity = 54/118 (45.76%), Postives = 66/118 (55.93%), Query Frame = 0


Query: 1   MEYEESLSKVVEIETNDNNIVEKVVEMEEAPSRVFPCLFCSRKFQSSQALGGHQNAHKKE 60
           +E EE +    E    D N          +  R+FPCLFCSRKF SSQALGGHQNAHKKE
Sbjct: 10  VEGEEEIKPSKEANKTDEN---------TSSLRIFPCLFCSRKFHSSQALGGHQNAHKKE 69

Query: 61  RTAARKAKRICDYSVSPPSPFPAPTSLVFAASQQQHHPGLLPHPVYIATHGANLHCFP 119
           RTAAR+AKR  D+  +       P   VF +S  QHH  +L +P       A++ CFP
Sbjct: 70  RTAARRAKRAYDFVNNNDFLHTLP---VFLSSPSQHHLTILGYPA-----SASVACFP 110

[Close]

BLAST of CsaV3_3G028730 vs. TAIR10
Match: AT5G01860.1 (C2H2 and C2HC zinc fingers superfamily protein)

HSP 1 Score: 65.5 bits (158), Expect = 2.7e-11
Identity = 37/78 (47.44%), Postives = 54/78 (69.23%), Query Frame = 0


Query: 29  EAPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRI-CDY-SVSPPSPFPAPTS 88
           EA +RVF C FC ++F +SQALGGHQNAHK+ER+ A++ K I  +Y  +S  S +P P+ 
Sbjct: 61  EAKARVFACTFCKKEFSTSQALGGHQNAHKQERSLAKRRKEIEINYPELSIYSQYP-PSG 120

Query: 89  LVFAASQQQHHPGLLPHP 105
           L F++S  Q+  G+  +P
Sbjct: 121 LSFSSSSSQYDLGVRYNP 137

[Close]

BLAST of CsaV3_3G028730 vs. TAIR10
Match: AT1G24625.1 (zinc finger protein 7)

HSP 1 Score: 61.2 bits (147), Expect = 5.1e-10
Identity = 36/75 (48.00%), Postives = 44/75 (58.67%), Query Frame = 0


Query: 29  EAPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRICDYSVSPPSPFPAPTSLV 88
           EA  RVF C +C RKF SSQALGGHQNAHK+ERT A++A  +         P+   +S  
Sbjct: 53  EANPRVFSCNYCRRKFYSSQALGGHQNAHKRERTMAKRAMHMGRMFGHHHRPYTYTSS-- 112

Query: 89  FAASQQQHHPGLLPH 104
             +   Q H GLL H
Sbjct: 113 --SLGMQAHSGLLHH 123

[Close]

BLAST of CsaV3_3G028730 vs. TAIR10
Match: AT1G66140.1 (zinc finger protein 4)

HSP 1 Score: 60.8 bits (146), Expect = 6.6e-10
Identity = 27/38 (71.05%), Postives = 32/38 (84.21%), Query Frame = 0


Query: 33  RVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRI 71
           RVF C +C RKF SSQALGGHQNAHK+ERT A++A R+
Sbjct: 83  RVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRAMRM 120

[Close]

BLAST of CsaV3_3G028730 vs. TAIR10
Match: AT5G14010.1 (C2H2 and C2HC zinc fingers superfamily protein)

HSP 1 Score: 60.5 bits (145), Expect = 8.7e-10
Identity = 26/37 (70.27%), Postives = 31/37 (83.78%), Query Frame = 0


Query: 30 APSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARK 67
          A  R+FPC +C RKF +SQALGGHQNAHK+ER AAR+
Sbjct: 33 ASHRLFPCQYCPRKFYTSQALGGHQNAHKRERAAARR 69

[Close]

BLAST of CsaV3_3G028730 vs. Swiss-Prot
Match: sp|Q9FKA9|LATE_ARATH (Protein LATE FLOWERING OS=Arabidopsis thaliana OX=3702 GN=LATE PE=2 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 3.5e-16
Identity = 54/118 (45.76%), Postives = 66/118 (55.93%), Query Frame = 0


Query: 1   MEYEESLSKVVEIETNDNNIVEKVVEMEEAPSRVFPCLFCSRKFQSSQALGGHQNAHKKE 60
           +E EE +    E    D N          +  R+FPCLFCSRKF SSQALGGHQNAHKKE
Sbjct: 10  VEGEEEIKPSKEANKTDEN---------TSSLRIFPCLFCSRKFHSSQALGGHQNAHKKE 69

Query: 61  RTAARKAKRICDYSVSPPSPFPAPTSLVFAASQQQHHPGLLPHPVYIATHGANLHCFP 119
           RTAAR+AKR  D+  +       P   VF +S  QHH  +L +P       A++ CFP
Sbjct: 70  RTAARRAKRAYDFVNNNDFLHTLP---VFLSSPSQHHLTILGYPA-----SASVACFP 110

[Close]

BLAST of CsaV3_3G028730 vs. Swiss-Prot
Match: sp|Q39266|ZFP7_ARATH (Zinc finger protein 7 OS=Arabidopsis thaliana OX=3702 GN=ZFP7 PE=1 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 9.2e-09
Identity = 36/75 (48.00%), Postives = 44/75 (58.67%), Query Frame = 0


Query: 29  EAPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRICDYSVSPPSPFPAPTSLV 88
           EA  RVF C +C RKF SSQALGGHQNAHK+ERT A++A  +         P+   +S  
Sbjct: 53  EANPRVFSCNYCRRKFYSSQALGGHQNAHKRERTMAKRAMHMGRMFGHHHRPYTYTSS-- 112

Query: 89  FAASQQQHHPGLLPH 104
             +   Q H GLL H
Sbjct: 113 --SLGMQAHSGLLHH 123

[Close]

BLAST of CsaV3_3G028730 vs. Swiss-Prot
Match: sp|Q39263|ZFP4_ARATH (Zinc finger protein 4 OS=Arabidopsis thaliana OX=3702 GN=ZFP4 PE=2 SV=2)

HSP 1 Score: 60.8 bits (146), Expect = 1.2e-08
Identity = 27/38 (71.05%), Postives = 32/38 (84.21%), Query Frame = 0


Query: 33  RVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRI 71
           RVF C +C RKF SSQALGGHQNAHK+ERT A++A R+
Sbjct: 83  RVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRAMRM 120

[Close]

BLAST of CsaV3_3G028730 vs. Swiss-Prot
Match: sp|Q9FFX4|KNU_ARATH (Zinc finger protein KNUCKLES OS=Arabidopsis thaliana OX=3702 GN=KNU PE=1 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.6e-08
Identity = 26/37 (70.27%), Postives = 31/37 (83.78%), Query Frame = 0


Query: 30 APSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARK 67
          A  R+FPC +C RKF +SQALGGHQNAHK+ER AAR+
Sbjct: 33 ASHRLFPCQYCPRKFYTSQALGGHQNAHKRERAAARR 69

[Close]

BLAST of CsaV3_3G028730 vs. Swiss-Prot
Match: sp|Q39261|ZFP2_ARATH (Zinc finger protein 2 OS=Arabidopsis thaliana OX=3702 GN=ZFP2 PE=1 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.0e-08
Identity = 31/54 (57.41%), Postives = 37/54 (68.52%), Query Frame = 0


Query: 33  RVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRICDYSVSPPSPFPAPTS 87
           RVF C +C RKF SSQALGGHQNAHK ERT A+K++ +   S +  S  P P S
Sbjct: 50  RVFSCNYCQRKFYSSQALGGHQNAHKLERTLAKKSRELFRSSNTVDSDQPYPFS 103

[Close]

BLAST of CsaV3_3G028730 vs. TrEMBL
Match: tr|A0A1S3BIU8|A0A1S3BIU8_CUCME (protein LATE FLOWERING-like OS=Cucumis melo OX=3656 GN=LOC103490048 PE=4 SV=1)

HSP 1 Score: 237.7 bits (605), Expect = 1.4e-59
Identity = 118/124 (95.16%), Postives = 121/124 (97.58%), Query Frame = 0


Query: 1   MEYEESLSKVVEIETNDNNIVEKVVEMEEAPSRVFPCLFCSRKFQSSQALGGHQNAHKKE 60
           MEYEESLSKVVEIETN+N+IVEKV+EMEE PSRVFPCLFCSRKFQSSQALGGHQNAHKKE
Sbjct: 1   MEYEESLSKVVEIETNNNDIVEKVLEMEETPSRVFPCLFCSRKFQSSQALGGHQNAHKKE 60

Query: 61  RTAARKAKRICDYSVSPPSPFPAPTSLVFAASQQQHHP-GLLPHPVYIATHGANLHCFPN 120
           RTAARKAKRICDYSVSPPSPF APTSLVFAASQQQHHP GLLPHPVYIATHGANLHCFPN
Sbjct: 61  RTAARKAKRICDYSVSPPSPFSAPTSLVFAASQQQHHPAGLLPHPVYIATHGANLHCFPN 120

Query: 121 NQQL 124
           NQQL
Sbjct: 121 NQQL 124

[Close]

BLAST of CsaV3_3G028730 vs. TrEMBL
Match: tr|A0A0A0LE19|A0A0A0LE19_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G624040 PE=4 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 4.7e-50
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0


Query: 27  MEEAPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRICDYSVSPPSPFPAPTS 86
           MEEAPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRICDYSVSPPSPFPAPTS
Sbjct: 1   MEEAPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRICDYSVSPPSPFPAPTS 60

Query: 87  LVFAASQQQHHPGLLPHPVYIATHGANLHCFPNNQQL 124
           LVFAASQQQHHPGLLPHPVYIATHGANLHCFPNNQQL
Sbjct: 61  LVFAASQQQHHPGLLPHPVYIATHGANLHCFPNNQQL 97

[Close]

BLAST of CsaV3_3G028730 vs. TrEMBL
Match: tr|A0A061DMR2|A0A061DMR2_THECC (C2H2-like zinc finger protein, putative OS=Theobroma cacao OX=3641 GN=TCM_003028 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 2.4e-22
Identity = 58/104 (55.77%), Postives = 71/104 (68.27%), Query Frame = 0


Query: 22  EKV--VEMEEAPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRICDYSVSPPS 81
           EKV   ++++  +RVFPCLFCSRKF SSQALGGHQNAHKKER+AARKAKR  +Y    P+
Sbjct: 85  EKVSQTKVDDGTTRVFPCLFCSRKFYSSQALGGHQNAHKKERSAARKAKRASEYG---PT 144

Query: 82  PFPAPTSLVFAASQQQHHPGLLPHPVYIATHGANLHCFPNNQQL 124
            F +  +L    +   HH G L  P+YI  H ANL CFPNN  +
Sbjct: 145 SFSSSPTLPMVYAPASHHLGTLHPPMYITAHAANLRCFPNNHHI 185

[Close]

BLAST of CsaV3_3G028730 vs. TrEMBL
Match: tr|A0A067JR31|A0A067JR31_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_17574 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 2.4e-22
Identity = 61/96 (63.54%), Postives = 69/96 (71.88%), Query Frame = 0


Query: 28  EEAPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRICDYSVSPPSPFPAPTSL 87
           +E  +RVFPCLFCSRKF SSQALGGHQNAHKKER AARKAKR  +Y+ +PP P P   SL
Sbjct: 15  DETRTRVFPCLFCSRKFYSSQALGGHQNAHKKERNAARKAKRASEYA-TPPPPLPPSASL 74

Query: 88  --VFAASQQQHHPGLLPHPVYIATHGANLHCFPNNQ 122
             VFA S   HH GLL   +YI  H A L C+PN+Q
Sbjct: 75  PMVFAPS-HNHHLGLLHPSMYITAHAAPLQCYPNHQ 108

[Close]

BLAST of CsaV3_3G028730 vs. TrEMBL
Match: tr|B9GNG7|B9GNG7_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_002G238700v3 PE=4 SV=2)

HSP 1 Score: 110.9 bits (276), Expect = 2.0e-21
Identity = 57/96 (59.38%), Postives = 69/96 (71.88%), Query Frame = 0


Query: 28  EEAPSRVFPCLFCSRKFQSSQALGGHQNAHKKERTAARKAKRICDYSVSPPSPFPAPTSL 87
           E+  +RVFPCLFCSRKF SSQALGGHQNAHKKER AARK +R+ +Y+ SPP  FP    +
Sbjct: 14  EDTAARVFPCLFCSRKFYSSQALGGHQNAHKKERNAARKTRRVSEYAPSPPPTFP----V 73

Query: 88  VFAASQQQHHPGLLPHPVYIAT-HGANLHCFPNNQQ 123
           +F+ S   HH GLL   +Y +T H ANLHC P + Q
Sbjct: 74  IFSPS---HHLGLLHPSMYTSTAHAANLHCHPTHDQ 102

The following BLAST results are available for this feature:

BLAST of CsaV3_3G028730 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008447640.1	2.2e-59	95.16	PREDICTED: protein LATE FLOWERING-like [Cucumis melo]	[more]
KGN58336.1	7.0e-50	100.00	hypothetical protein Csa_3G624040 [Cucumis sativus]	[more]
XP_022931139.1	1.7e-35	65.85	protein LATE FLOWERING [Cucurbita moschata]	[more]
XP_023532770.1	4.9e-35	76.77	protein LATE FLOWERING-like [Cucurbita pepo subsp. pepo]	[more]
XP_022996351.1	1.2e-33	65.04	protein LATE FLOWERING-like [Cucurbita maxima]	[more]

BLAST of CsaV3_3G028730 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G48890.1	1.9e-17	45.76	C2H2-like zinc finger protein	[more]
AT5G01860.1	2.7e-11	47.44	C2H2 and C2HC zinc fingers superfamily protein	[more]
AT1G24625.1	5.1e-10	48.00	zinc finger protein 7	[more]
AT1G66140.1	6.6e-10	71.05	zinc finger protein 4	[more]
AT5G14010.1	8.7e-10	70.27	C2H2 and C2HC zinc fingers superfamily protein	[more]

BLAST of CsaV3_3G028730 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9FKA9\|LATE_ARATH	3.5e-16	45.76	Protein LATE FLOWERING OS=Arabidopsis thaliana OX=3702 GN=LATE PE=2 SV=1	[more]
sp\|Q39266\|ZFP7_ARATH	9.2e-09	48.00	Zinc finger protein 7 OS=Arabidopsis thaliana OX=3702 GN=ZFP7 PE=1 SV=1	[more]
sp\|Q39263\|ZFP4_ARATH	1.2e-08	71.05	Zinc finger protein 4 OS=Arabidopsis thaliana OX=3702 GN=ZFP4 PE=2 SV=2	[more]
sp\|Q9FFX4\|KNU_ARATH	1.6e-08	70.27	Zinc finger protein KNUCKLES OS=Arabidopsis thaliana OX=3702 GN=KNU PE=1 SV=1	[more]
sp\|Q39261\|ZFP2_ARATH	2.0e-08	57.41	Zinc finger protein 2 OS=Arabidopsis thaliana OX=3702 GN=ZFP2 PE=1 SV=1	[more]

BLAST of CsaV3_3G028730 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BIU8\|A0A1S3BIU8_CUCME	1.4e-59	95.16	protein LATE FLOWERING-like OS=Cucumis melo OX=3656 GN=LOC103490048 PE=4 SV=1	[more]
tr\|A0A0A0LE19\|A0A0A0LE19_CUCSA	4.7e-50	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G624040 PE=4 SV=1	[more]
tr\|A0A061DMR2\|A0A061DMR2_THECC	2.4e-22	55.77	C2H2-like zinc finger protein, putative OS=Theobroma cacao OX=3641 GN=TCM_003028...	[more]
tr\|A0A067JR31\|A0A067JR31_JATCU	2.4e-22	63.54	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_17574 PE=4 SV=1	[more]
tr\|B9GNG7\|B9GNG7_POPTR	2.0e-21	59.38	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_002G238700v3 PE=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR036236	Znf_C2H2_sf
IPR013087	Znf_C2H2_type

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0050789	regulation of biological process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0046872	metal ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G028730.1	CsaV3_3G028730.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:3.30.160.60		coord: 13..76 e-value: 7.2E-7 score: 30.9
None	No IPR available	PANTHER	PTHR26374	FAMILY NOT NAMED	coord: 28..93
None	No IPR available	PANTHER	PTHR26374:SF265	PROTEIN LATE FLOWERING	coord: 28..93
IPR013087	Zinc finger C2H2-type	PROSITE	PS00028	ZINC_FINGER_C2H2_1	coord: 37..57
IPR013087	Zinc finger C2H2-type	PROSITE	PS50157	ZINC_FINGER_C2H2_2	coord: 35..62 score: 10.97
IPR036236	Zinc finger C2H2 superfamily	SUPERFAMILY	SSF57667	beta-beta-alpha zinc fingers	coord: 32..62

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_3G028730	Cucsa.140350	Cucumber (Gy14) v1	cgycucB212
CsaV3_3G028730	CmaCh19G001370	Cucurbita maxima (Rimu)	cmacucB0614
CsaV3_3G028730	CmaCh02G016970	Cucurbita maxima (Rimu)	cmacucB0716
CsaV3_3G028730	CmoCh02G017410	Cucurbita moschata (Rifu)	cmocucB0703
CsaV3_3G028730	CmoCh19G001560	Cucurbita moschata (Rifu)	cmocucB0598
CsaV3_3G028730	Cp4.1LG15g01200	Cucurbita pepo (Zucchini)	cpecucB0297
CsaV3_3G028730	CsGy3G025380	Cucumber (Gy14) v2	cgybcucB117
CsaV3_3G028730	Carg08917	Silver-seed gourd	carcucB0819
CsaV3_3G028730	Cla002741	Watermelon (97103) v1	cucwmB234
CsaV3_3G028730	MELO3C012789	Melon (DHL92) v3.5.1	cucmeB221
CsaV3_3G028730	ClCG07G001730	Watermelon (Charleston Gray)	cucwcgB258
CsaV3_3G028730	Lsi05G010950	Bottle gourd (USVL1VR-Ls)	cuclsiB219
CsaV3_3G028730	MELO3C012789.2	Melon (DHL92) v3.6.1	cucmedB214
CsaV3_3G028730	Cla97C07G129980	Watermelon (97103) v2	cucwmbB238
CsaV3_3G028730	Bhi05G000079	Wax gourd	cucwgoB311

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_3G028730	Cucumber (Chinese Long) v3	cuccucB114
CsaV3_3G028730	Cucumber (Chinese Long) v3	cuccucB159
CsaV3_3G028730	Silver-seed gourd	carcucB0080
CsaV3_3G028730	Silver-seed gourd	carcucB0267
CsaV3_3G028730	Silver-seed gourd	carcucB1002
CsaV3_3G028730	Cucumber (Gy14) v2	cgybcucB125
CsaV3_3G028730	Cucumber (Gy14) v2	cgybcucB331
CsaV3_3G028730	Cucumber (Gy14) v1	cgycucB079
CsaV3_3G028730	Cucumber (Gy14) v1	cgycucB386
CsaV3_3G028730	Cucurbita maxima (Rimu)	cmacucB0287
CsaV3_3G028730	Cucurbita maxima (Rimu)	cmacucB0434
CsaV3_3G028730	Cucurbita maxima (Rimu)	cmacucB0984
CsaV3_3G028730	Cucurbita maxima (Rimu)	cmacucB1058
CsaV3_3G028730	Cucurbita moschata (Rifu)	cmocucB0279
CsaV3_3G028730	Cucurbita moschata (Rifu)	cmocucB0429
CsaV3_3G028730	Cucurbita moschata (Rifu)	cmocucB0967
CsaV3_3G028730	Cucurbita moschata (Rifu)	cmocucB1040
CsaV3_3G028730	Cucurbita pepo (Zucchini)	cpecucB0160
CsaV3_3G028730	Cucurbita pepo (Zucchini)	cpecucB0383
CsaV3_3G028730	Cucurbita pepo (Zucchini)	cpecucB0755
CsaV3_3G028730	Cucurbita pepo (Zucchini)	cpecucB0893
CsaV3_3G028730	Cucurbita pepo (Zucchini)	cpecucB1053
CsaV3_3G028730	Wild cucumber (PI 183967)	cpicucB144
CsaV3_3G028730	Wild cucumber (PI 183967)	cpicucB156
CsaV3_3G028730	Bottle gourd (USVL1VR-Ls)	cuclsiB173
CsaV3_3G028730	Bottle gourd (USVL1VR-Ls)	cuclsiB196
CsaV3_3G028730	Bottle gourd (USVL1VR-Ls)	cuclsiB220
CsaV3_3G028730	Melon (DHL92) v3.5.1	cucmeB230
CsaV3_3G028730	Melon (DHL92) v3.5.1	cucmeB253
CsaV3_3G028730	Melon (DHL92) v3.6.1	cucmedB222
CsaV3_3G028730	Melon (DHL92) v3.6.1	cucmedB249
CsaV3_3G028730	Watermelon (Charleston Gray)	cucwcgB193
CsaV3_3G028730	Watermelon (Charleston Gray)	cucwcgB246
CsaV3_3G028730	Watermelon (97103) v1	cucwmB261
CsaV3_3G028730	Watermelon (97103) v1	cucwmB286
CsaV3_3G028730	Watermelon (97103) v2	cucwmbB224
CsaV3_3G028730	Watermelon (97103) v2	cucwmbB230
CsaV3_3G028730	Wax gourd	cucwgoB267