CsaV3_3G027230 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G027230
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionPentatricopeptide repeat-containing protein
Locationchr3 : 23589544 .. 23591151 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGGTGCTACTTCCGCTCCAACAGATTCAAAAACATTTCACTCCATACCCCAATTTCCATTGTCCCTCTTCGTTTCATCTTCGCCGTCGAAACTCCTCTTCAGTCCTACACCGTCACGCCGCCCATTAAACCATGGCCGCAGCGTCTGTTTCCCAACCGCCTCGTCGCTATGATTCGTCGCCAACAGAATCTCGACCTCGCCCTTCAAATCTTCCACTACGCCGGCAAATATCACCCCGCTTTTACCCACAACTACGATACCTATCATGCCATCATTTATCGTCTCTCTCGCGCTCGAGCTTTTGAACCTGTCGAGTCTTTGCTCTTGGAATTGCAGGATTCTGGTATCAATTGCAGTGAGGACTTGTTCATTACTGTGATTAGAAGCTATGGGCTTGCTAGTCGGCCCAAAATGGCTCTGAAAACGTTTCTACGTATTCAAACCTTCGGTGTTCGACGCTCGGTGAGGTCGTTGAACACGTTGCTCAACGCTTTGGTGCAGAACAATCGGTTTTCTTCGGTTCATTTGTTGTTTAAGTATTCCAAGTCCAAATTTGGGGTTGTGCCTAATGTGTTTACTTGTAACATTTTGATTAAAGCGCTTTGCAAAAAGAATGATGTTGAGGGTGCACGAAAGGTGTTTGACGAAATGCCTTCCATGGGTATTGTTCCAAATGTGGTTACTTATACTACAATCTTAGGCGGTTATGTTTCAAGAGGTGATATGATTGGTGCCAAGAGAGTTTTTGGTGAACTTTTTGATCATGGGTGGCTTCCTGATGCGACTACTTACACAATTTTAATGGATGGGTACGTTAAGCAAGGTAGGTTTACTGATGCTGTCAAGGTGATGGATGAAATGGAGGAAAATGGGGTCGAGCCAAACGATATTACTTATGGAGTCATTATTTTAGGTTATTGTAAGGAGAGAAAGTCTGGTGAAGCACTTAACCTGCTTAATGATATGCTTGAAAAGAAGTATATTCCAAATTCTGCACTTTGCTGTAAGGTGATTGATGTTTTGTGCGGTGAGGGTAGGGTGAAGGAAGCTTGTAAGATGTGGGAGAAGCTTTTGAAGAAAAACTGTACTCCAGATAATGCTATTACAAGTACTCTTATTCATTGGCTTTGTAAGGAGGGGAATATATGGGAAGCAAGAAAATTATTTAATGAGTTTGAAAGAGGCACAATTTCAAGTTTATTGACGTATAACACGCTCATTGCAGGAATGTGTGAGATGGGGGAGTTGTGTGAAGCCGCTAGGTTGTGGGATGACATGTTGGAAAAGGGTTGTGTGCCTAATGAATTTACTTATAACATGCTGATAAAAGGATTCCTTAAAGTTGGTAAAGCTAAGGAGGTGATTAAAGTAGTGGAGGAGATGTTGGATAAGGGATGCTTGCTGAACGAATCTACTTACTTAATATTGGTTGAAGGGCTCCTCAAATTGGGAAAAAGAGAAGAACTTCTTAATATTCTTTCAATGATTATCTCAAGTGGAGCTGTTGACTTTAAAGCGTGGAATTTATTTGTACCACATTTTGTTTCTAATGTGAATGAACAGGCAAACATTCTCGAAAAAATATTGATCGAAACTTTTAGGTAG

mRNA sequence

ATGCGGTGCTACTTCCGCTCCAACAGATTCAAAAACATTTCACTCCATACCCCAATTTCCATTGTCCCTCTTCGTTTCATCTTCGCCGTCGAAACTCCTCTTCAGTCCTACACCGTCACGCCGCCCATTAAACCATGGCCGCAGCGTCTGTTTCCCAACCGCCTCGTCGCTATGATTCGTCGCCAACAGAATCTCGACCTCGCCCTTCAAATCTTCCACTACGCCGGCAAATATCACCCCGCTTTTACCCACAACTACGATACCTATCATGCCATCATTTATCGTCTCTCTCGCGCTCGAGCTTTTGAACCTGTCGAGTCTTTGCTCTTGGAATTGCAGGATTCTGGTATCAATTGCAGTGAGGACTTGTTCATTACTGTGATTAGAAGCTATGGGCTTGCTAGTCGGCCCAAAATGGCTCTGAAAACGTTTCTACGTATTCAAACCTTCGGTGTTCGACGCTCGGTGAGGTCGTTGAACACGTTGCTCAACGCTTTGGTGCAGAACAATCGGTTTTCTTCGGTTCATTTGTTGTTTAAGTATTCCAAGTCCAAATTTGGGGTTGTGCCTAATGTGTTTACTTGTAACATTTTGATTAAAGCGCTTTGCAAAAAGAATGATGTTGAGGGTGCACGAAAGGTGTTTGACGAAATGCCTTCCATGGGTATTGTTCCAAATGTGGTTACTTATACTACAATCTTAGGCGGTTATGTTTCAAGAGGTGATATGATTGGTGCCAAGAGAGTTTTTGGTGAACTTTTTGATCATGGGTGGCTTCCTGATGCGACTACTTACACAATTTTAATGGATGGGTACGTTAAGCAAGGTAGGTTTACTGATGCTGTCAAGGTGATGGATGAAATGGAGGAAAATGGGGTCGAGCCAAACGATATTACTTATGGAGTCATTATTTTAGGTTATTGTAAGGAGAGAAAGTCTGGTGAAGCACTTAACCTGCTTAATGATATGCTTGAAAAGAAGTATATTCCAAATTCTGCACTTTGCTGTAAGGTGATTGATGTTTTGTGCGGTGAGGGTAGGGTGAAGGAAGCTTGTAAGATGTGGGAGAAGCTTTTGAAGAAAAACTGTACTCCAGATAATGCTATTACAAGTACTCTTATTCATTGGCTTTGTAAGGAGGGGAATATATGGGAAGCAAGAAAATTATTTAATGAGTTTGAAAGAGGCACAATTTCAAGTTTATTGACGTATAACACGCTCATTGCAGGAATGTGTGAGATGGGGGAGTTGTGTGAAGCCGCTAGGTTGTGGGATGACATGTTGGAAAAGGGTTGTGTGCCTAATGAATTTACTTATAACATGCTGATAAAAGGATTCCTTAAAGTTGGTAAAGCTAAGGAGGTGATTAAAGTAGTGGAGGAGATGTTGGATAAGGGATGCTTGCTGAACGAATCTACTTACTTAATATTGGTTGAAGGGCTCCTCAAATTGGGAAAAAGAGAAGAACTTCTTAATATTCTTTCAATGATTATCTCAAGTGGAGCTGTTGACTTTAAAGCGTGGAATTTATTTGTACCACATTTTGTTTCTAATGTGAATGAACAGGCAAACATTCTCGAAAAAATATTGATCGAAACTTTTAGGTAG

Coding sequence (CDS)

ATGCGGTGCTACTTCCGCTCCAACAGATTCAAAAACATTTCACTCCATACCCCAATTTCCATTGTCCCTCTTCGTTTCATCTTCGCCGTCGAAACTCCTCTTCAGTCCTACACCGTCACGCCGCCCATTAAACCATGGCCGCAGCGTCTGTTTCCCAACCGCCTCGTCGCTATGATTCGTCGCCAACAGAATCTCGACCTCGCCCTTCAAATCTTCCACTACGCCGGCAAATATCACCCCGCTTTTACCCACAACTACGATACCTATCATGCCATCATTTATCGTCTCTCTCGCGCTCGAGCTTTTGAACCTGTCGAGTCTTTGCTCTTGGAATTGCAGGATTCTGGTATCAATTGCAGTGAGGACTTGTTCATTACTGTGATTAGAAGCTATGGGCTTGCTAGTCGGCCCAAAATGGCTCTGAAAACGTTTCTACGTATTCAAACCTTCGGTGTTCGACGCTCGGTGAGGTCGTTGAACACGTTGCTCAACGCTTTGGTGCAGAACAATCGGTTTTCTTCGGTTCATTTGTTGTTTAAGTATTCCAAGTCCAAATTTGGGGTTGTGCCTAATGTGTTTACTTGTAACATTTTGATTAAAGCGCTTTGCAAAAAGAATGATGTTGAGGGTGCACGAAAGGTGTTTGACGAAATGCCTTCCATGGGTATTGTTCCAAATGTGGTTACTTATACTACAATCTTAGGCGGTTATGTTTCAAGAGGTGATATGATTGGTGCCAAGAGAGTTTTTGGTGAACTTTTTGATCATGGGTGGCTTCCTGATGCGACTACTTACACAATTTTAATGGATGGGTACGTTAAGCAAGGTAGGTTTACTGATGCTGTCAAGGTGATGGATGAAATGGAGGAAAATGGGGTCGAGCCAAACGATATTACTTATGGAGTCATTATTTTAGGTTATTGTAAGGAGAGAAAGTCTGGTGAAGCACTTAACCTGCTTAATGATATGCTTGAAAAGAAGTATATTCCAAATTCTGCACTTTGCTGTAAGGTGATTGATGTTTTGTGCGGTGAGGGTAGGGTGAAGGAAGCTTGTAAGATGTGGGAGAAGCTTTTGAAGAAAAACTGTACTCCAGATAATGCTATTACAAGTACTCTTATTCATTGGCTTTGTAAGGAGGGGAATATATGGGAAGCAAGAAAATTATTTAATGAGTTTGAAAGAGGCACAATTTCAAGTTTATTGACGTATAACACGCTCATTGCAGGAATGTGTGAGATGGGGGAGTTGTGTGAAGCCGCTAGGTTGTGGGATGACATGTTGGAAAAGGGTTGTGTGCCTAATGAATTTACTTATAACATGCTGATAAAAGGATTCCTTAAAGTTGGTAAAGCTAAGGAGGTGATTAAAGTAGTGGAGGAGATGTTGGATAAGGGATGCTTGCTGAACGAATCTACTTACTTAATATTGGTTGAAGGGCTCCTCAAATTGGGAAAAAGAGAAGAACTTCTTAATATTCTTTCAATGATTATCTCAAGTGGAGCTGTTGACTTTAAAGCGTGGAATTTATTTGTACCACATTTTGTTTCTAATGTGAATGAACAGGCAAACATTCTCGAAAAAATATTGATCGAAACTTTTAGGTAG

Protein sequence

MRCYFRSNRFKNISLHTPISIVPLRFIFAVETPLQSYTVTPPIKPWPQRLFPNRLVAMIRRQQNLDLALQIFHYAGKYHPAFTHNYDTYHAIIYRLSRARAFEPVESLLLELQDSGINCSEDLFITVIRSYGLASRPKMALKTFLRIQTFGVRRSVRSLNTLLNALVQNNRFSSVHLLFKYSKSKFGVVPNVFTCNILIKALCKKNDVEGARKVFDEMPSMGIVPNVVTYTTILGGYVSRGDMIGAKRVFGELFDHGWLPDATTYTILMDGYVKQGRFTDAVKVMDEMEENGVEPNDITYGVIILGYCKERKSGEALNLLNDMLEKKYIPNSALCCKVIDVLCGEGRVKEACKMWEKLLKKNCTPDNAITSTLIHWLCKEGNIWEARKLFNEFERGTISSLLTYNTLIAGMCEMGELCEAARLWDDMLEKGCVPNEFTYNMLIKGFLKVGKAKEVIKVVEEMLDKGCLLNESTYLILVEGLLKLGKREELLNILSMIISSGAVDFKAWNLFVPHFVSNVNEQANILEKILIETFR
Homology
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BLAST of CsaV3_3G027230 vs. NCBI nr
Match: XP_004145716.1 (PREDICTED: pentatricopeptide repeat-containing protein At5g16420, mitochondrial [Cucumis sativus] >KGN58196.1 hypothetical protein Csa_3G589540 [Cucumis sativus])

HSP 1 Score: 440.3 bits (1131), Expect = 9.6e-120
Identity = 219/219 (100.00%), Postives = 219/219 (100.00%), Query Frame = 0 

Query: 1   MRCYFRSNRFKNISLHTPISIVPLRFIFAVETPLQSYTVTPPIKPWPQRLFPNRLVAMIR 60
           MRCYFRSNRFKNISLHTPISIVPLRFIFAVETPLQSYTVTPPIKPWPQRLFPNRLVAMIR
Sbjct: 1   MRCYFRSNRFKNISLHTPISIVPLRFIFAVETPLQSYTVTPPIKPWPQRLFPNRLVAMIR 60

Query: 61  RQQNLDLALQIFHYAGKYHPAFTHNYDTYHAIIYRLSRARAFEPVESLLLELQDSGINCS 120
           RQQNLDLALQIFHYAGKYHPAFTHNYDTYHAIIYRLSRARAFEPVESLLLELQDSGINCS
Sbjct: 61  RQQNLDLALQIFHYAGKYHPAFTHNYDTYHAIIYRLSRARAFEPVESLLLELQDSGINCS 120

Query: 121 EDLFITVIRSYGLASRPKMALKTFLRIQTFGVRRSVRSLNTLLNALVQNNRFSSVHLLFK 180
           EDLFITVIRSYGLASRPKMALKTFLRIQTFGVRRSVRSLNTLLNALVQNNRFSSVHLLFK
Sbjct: 121 EDLFITVIRSYGLASRPKMALKTFLRIQTFGVRRSVRSLNTLLNALVQNNRFSSVHLLFK 180

Query: 181 YSKSKFGVVPNVFTCNILIKALCKKNDVEGARKVFDEMP 220
           YSKSKFGVVPNVFTCNILIKALCKKNDVEGARKVFDEMP
Sbjct: 181 YSKSKFGVVPNVFTCNILIKALCKKNDVEGARKVFDEMP 219

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BLAST of CsaV3_3G027230 vs. NCBI nr
Match: XP_008450076.1 (PREDICTED: pentatricopeptide repeat-containing protein At5g16420, mitochondrial [Cucumis melo] >XP_008450077.1 PREDICTED: pentatricopeptide repeat-containing protein At5g16420, mitochondrial [Cucumis melo])

HSP 1 Score: 425.6 bits (1093), Expect = 2.4e-115
Identity = 210/219 (95.89%), Postives = 216/219 (98.63%), Query Frame = 0 

Query: 1   MRCYFRSNRFKNISLHTPISIVPLRFIFAVETPLQSYTVTPPIKPWPQRLFPNRLVAMIR 60
           MRCYFRSNRFK+ISLHTPISIVPLRFIFA+ETPLQSYTVTPPIKPWPQRLFP RLVAMIR
Sbjct: 1   MRCYFRSNRFKHISLHTPISIVPLRFIFAIETPLQSYTVTPPIKPWPQRLFPKRLVAMIR 60

Query: 61  RQQNLDLALQIFHYAGKYHPAFTHNYDTYHAIIYRLSRARAFEPVESLLLELQDSGINCS 120
           RQQNLDLALQIFHYAGK+HPAF+HNYDTYHAII+RLSRARAFEPVESLLLELQD+GINCS
Sbjct: 61  RQQNLDLALQIFHYAGKFHPAFSHNYDTYHAIIHRLSRARAFEPVESLLLELQDAGINCS 120

Query: 121 EDLFITVIRSYGLASRPKMALKTFLRIQTFGVRRSVRSLNTLLNALVQNNRFSSVHLLFK 180
           EDLFITVIRSYGLA RPKMALKTFLRIQTFGVRRSVRSLNTLLNALVQNNRFS VHLLFK
Sbjct: 121 EDLFITVIRSYGLAGRPKMALKTFLRIQTFGVRRSVRSLNTLLNALVQNNRFSLVHLLFK 180

Query: 181 YSKSKFGVVPNVFTCNILIKALCKKNDVEGARKVFDEMP 220
           YSKSKFGVVPNVFTCNILIKALCKKNDVEGARKVFDEMP
Sbjct: 181 YSKSKFGVVPNVFTCNILIKALCKKNDVEGARKVFDEMP 219

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BLAST of CsaV3_3G027230 vs. NCBI nr
Match: XP_022154201.1 (pentatricopeptide repeat-containing protein At5g16420, mitochondrial [Momordica charantia] >XP_022154202.1 pentatricopeptide repeat-containing protein At5g16420, mitochondrial [Momordica charantia])

HSP 1 Score: 376.7 bits (966), Expect = 1.3e-100
Identity = 184/219 (84.02%), Postives = 202/219 (92.24%), Query Frame = 0 

Query: 1   MRCYFRSNRFKNISLHTPISIVPLRFIFAVETPLQSYTVTPPIKPWPQRLFPNRLVAMIR 60
           M CY   N+ K+ISLH+ I+IVPLRFIFAV++ LQSYTVTPPIKPWPQRL+P RLV+MI 
Sbjct: 1   MWCYISRNKIKSISLHSSIAIVPLRFIFAVDSSLQSYTVTPPIKPWPQRLYPRRLVSMII 60

Query: 61  RQQNLDLALQIFHYAGKYHPAFTHNYDTYHAIIYRLSRARAFEPVESLLLELQDSGINCS 120
            QQNLDLALQIFH+AGK+HP F+HNYDTYHAI++RLSRARAFEPVESLLL+LQ SGI C 
Sbjct: 61  GQQNLDLALQIFHHAGKFHPGFSHNYDTYHAIVHRLSRARAFEPVESLLLDLQSSGIKCG 120

Query: 121 EDLFITVIRSYGLASRPKMALKTFLRIQTFGVRRSVRSLNTLLNALVQNNRFSSVHLLFK 180
           EDLFITVIRSYGLA RPK+A+KTFLRIQTFGVRRSVRSLNTLLNALVQNNRFS VHLLFK
Sbjct: 121 EDLFITVIRSYGLAGRPKLAVKTFLRIQTFGVRRSVRSLNTLLNALVQNNRFSLVHLLFK 180

Query: 181 YSKSKFGVVPNVFTCNILIKALCKKNDVEGARKVFDEMP 220
           +S SKFGVVPNVFTCNILIKALCKKND+EGARKVFDEMP
Sbjct: 181 HSNSKFGVVPNVFTCNILIKALCKKNDIEGARKVFDEMP 219

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BLAST of CsaV3_3G027230 vs. NCBI nr
Match: XP_022982687.1 (pentatricopeptide repeat-containing protein At5g16420, mitochondrial [Cucurbita maxima] >XP_022982688.1 pentatricopeptide repeat-containing protein At5g16420, mitochondrial [Cucurbita maxima] >XP_022982689.1 pentatricopeptide repeat-containing protein At5g16420, mitochondrial [Cucurbita maxima] >XP_022982690.1 pentatricopeptide repeat-containing protein At5g16420, mitochondrial [Cucurbita maxima] >XP_022982691.1 pentatricopeptide repeat-containing protein At5g16420, mitochondrial [Cucurbita maxima] >XP_022982693.1 pentatricopeptide repeat-containing protein At5g16420, mitochondrial [Cucurbita maxima] >XP_022982694.1 pentatricopeptide repeat-containing protein At5g16420, mitochondrial [Cucurbita maxima] >XP_022982695.1 pentatricopeptide repeat-containing protein At5g16420, mitochondrial [Cucurbita maxima] >XP_022982696.1 pentatricopeptide repeat-containing protein At5g16420, mitochondrial [Cucurbita maxima] >XP_022982697.1 pentatricopeptide repeat-containing protein At5g16420, mitochondrial [Cucurbita maxima] >XP_022982698.1 pentatricopeptide repeat-containing protein At5g16420, mitochondrial [Cucurbita maxima] >XP_022982699.1 pentatricopeptide repeat-containing protein At5g16420, mitochondrial [Cucurbita maxima])

HSP 1 Score: 364.4 bits (934), Expect = 6.7e-97
Identity = 180/215 (83.72%), Postives = 200/215 (93.02%), Query Frame = 0 

Query: 5   FRSNRFKNISLHTPISIVPLRFIFAVETPLQSYTVTPPIKPWPQRLFPNRLVAMIRRQQN 64
           FR N+F   SLH+PIS + LRFIF+V++ +QSYTVTPPIKPWPQRL+P RLVAM+ RQQN
Sbjct: 5   FRYNKFFPTSLHSPISNLSLRFIFSVDSSVQSYTVTPPIKPWPQRLYPKRLVAMVIRQQN 64

Query: 65  LDLALQIFHYAGKYHPAFTHNYDTYHAIIYRLSRARAFEPVESLLLELQDSGINCSEDLF 124
           LDLALQIFHYAGK+HP F+HNYDTYHAII+RLSRARAFEPVESLL EL++SGINC EDLF
Sbjct: 65  LDLALQIFHYAGKFHPGFSHNYDTYHAIIHRLSRARAFEPVESLLGELKNSGINCGEDLF 124

Query: 125 ITVIRSYGLASRPKMALKTFLRIQTFGVRRSVRSLNTLLNALVQNNRFSSVHLLFKYSKS 184
           I+VIR+YGLASRPKMA+KTFLRIQTFGVRRSVRSLNTLLNALVQN RFS VHLLFK+S+S
Sbjct: 125 ISVIRNYGLASRPKMAVKTFLRIQTFGVRRSVRSLNTLLNALVQNKRFSLVHLLFKHSRS 184

Query: 185 KFGVVPNVFTCNILIKALCKKNDVEGARKVFDEMP 220
           KFGVV NVFTCNILIKALC+KNDVEGARKVFDEMP
Sbjct: 185 KFGVVSNVFTCNILIKALCEKNDVEGARKVFDEMP 219

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BLAST of CsaV3_3G027230 vs. NCBI nr
Match: XP_023528110.1 (pentatricopeptide repeat-containing protein At5g16420, mitochondrial [Cucurbita pepo subsp. pepo] >XP_023528111.1 pentatricopeptide repeat-containing protein At5g16420, mitochondrial [Cucurbita pepo subsp. pepo] >XP_023528112.1 pentatricopeptide repeat-containing protein At5g16420, mitochondrial [Cucurbita pepo subsp. pepo] >XP_023528113.1 pentatricopeptide repeat-containing protein At5g16420, mitochondrial [Cucurbita pepo subsp. pepo] >XP_023528114.1 pentatricopeptide repeat-containing protein At5g16420, mitochondrial [Cucurbita pepo subsp. pepo] >XP_023528115.1 pentatricopeptide repeat-containing protein At5g16420, mitochondrial [Cucurbita pepo subsp. pepo] >XP_023528116.1 pentatricopeptide repeat-containing protein At5g16420, mitochondrial [Cucurbita pepo subsp. pepo] >XP_023528117.1 pentatricopeptide repeat-containing protein At5g16420, mitochondrial [Cucurbita pepo subsp. pepo] >XP_023528118.1 pentatricopeptide repeat-containing protein At5g16420, mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 363.2 bits (931), Expect = 1.5e-96
Identity = 180/214 (84.11%), Postives = 197/214 (92.06%), Query Frame = 0 

Query: 6   RSNRFKNISLHTPISIVPLRFIFAVETPLQSYTVTPPIKPWPQRLFPNRLVAMIRRQQNL 65
           R N+F   SLH+PIS +PLRFIF V++ +QSYTVTPPIKPWPQRL+P RLVAMI RQQNL
Sbjct: 6   RYNKFFPTSLHSPISNLPLRFIFTVDSSVQSYTVTPPIKPWPQRLYPKRLVAMIIRQQNL 65

Query: 66  DLALQIFHYAGKYHPAFTHNYDTYHAIIYRLSRARAFEPVESLLLELQDSGINCSEDLFI 125
           DLALQIFHYAGKYHP F+HNYDTYHAII+RLSRARAFEPVESLL EL++SGINC EDLFI
Sbjct: 66  DLALQIFHYAGKYHPGFSHNYDTYHAIIHRLSRARAFEPVESLLGELKNSGINCGEDLFI 125

Query: 126 TVIRSYGLASRPKMALKTFLRIQTFGVRRSVRSLNTLLNALVQNNRFSSVHLLFKYSKSK 185
           +VIR+YGLA RPKMA+K FLRIQTFGVRRSVRSLNTLLNALVQN RFS VHLLFK+S+SK
Sbjct: 126 SVIRNYGLAGRPKMAVKMFLRIQTFGVRRSVRSLNTLLNALVQNKRFSLVHLLFKHSRSK 185

Query: 186 FGVVPNVFTCNILIKALCKKNDVEGARKVFDEMP 220
           FGVVPNVFTCNILIKALC+KNDVEGARKV DEMP
Sbjct: 186 FGVVPNVFTCNILIKALCEKNDVEGARKVSDEMP 219

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BLAST of CsaV3_3G027230 vs. TAIR10
Match: AT5G16420.1 (Pentatricopeptide repeat (PPR-like) superfamily protein)

HSP 1 Score: 259.6 bits (662), Expect = 4.2e-69
Identity = 125/188 (66.49%), Postives = 154/188 (81.91%), Query Frame = 0 

Query: 34  LQSY-TVTPPIKPWPQRLFPNRLVAMIRRQQNLDLALQIFHYAGKYHPAFTHNYDTYHAI 93
           LQ Y T  PPIKPWPQRLFP RLV+MI +QQN+DLALQIF YAGK HP FTHNYDTYH+I
Sbjct: 30  LQQYCTEKPPIKPWPQRLFPKRLVSMITQQQNIDLALQIFLYAGKSHPGFTHNYDTYHSI 89

Query: 94  IYRLSRARAFEPVESLLLELQDS--GINCSEDLFITVIRSYGLASRPKMALKTFLRIQTF 153
           +++LSRARAF+PVESL+ +L++S   I C E+LFI ++R+YGLA R + +++ FLRI  F
Sbjct: 90  LFKLSRARAFDPVESLMADLRNSYPPIKCGENLFIDLLRNYGLAGRYESSMRIFLRIPDF 149

Query: 154 GVRRSVRSLNTLLNALVQNNRFSSVHLLFKYSKSKFGVVPNVFTCNILIKALCKKNDVEG 213
           GV+RSVRSLNTLLN L+QN RF  VH +FK SK  FG+ PN+FTCN+L+KALCKKND+E 
Sbjct: 150 GVKRSVRSLNTLLNVLIQNQRFDLVHAMFKNSKESFGITPNIFTCNLLVKALCKKNDIES 209

Query: 214 ARKVFDEM 219
           A KV DE+
Sbjct: 210 AYKVLDEI 217

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BLAST of CsaV3_3G027230 vs. TAIR10
Match: AT5G46100.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 90.9 bits (224), Expect = 2.6e-18
Identity = 50/178 (28.09%), Postives = 104/178 (58.43%), Query Frame = 0 

Query: 46  WPQRLFPNRLVAMIRRQQNLDLALQIFHYA-GKYHPAFTHNYDTYHAIIYRLSRARAFEP 105
           W + + P++++ ++R +++++ ++ +F  A  +Y   + H+  ++  ++ RL  A  F+ 
Sbjct: 10  WSKNITPSQVIKLMRAEKDVEKSMAVFDSATAEYANGYVHDQSSFGYMVLRLVSANKFKA 69

Query: 106 VESLLLELQDSGINCSEDLFITVIRSYGLASRPKMALKTFLRIQTFGVRRSVRSLNTLLN 165
            E L++ ++      SED+ +++ R YG   RP  +L+ F +++ F    S ++  T+L 
Sbjct: 70  AEDLIVRMKIENCVVSEDILLSICRGYGRVHRPFDSLRVFHKMKDFDCDPSQKAYVTVLA 129

Query: 166 ALVQNNRFSSVHLLFKYSKS--KFGVVPNVFTCNILIKALCKKN-DVEGARKVFDEMP 220
            LV+ N+   ++L FK+ K+  + G+ P V + N+LIKALC+ +  V+   K+F EMP
Sbjct: 130 ILVEENQ---LNLAFKFYKNMREIGLPPTVASLNVLIKALCRNDGTVDAGLKIFLEMP 184

[Close]
BLAST of CsaV3_3G027230 vs. TAIR10
Match: AT3G09060.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 82.4 bits (202), Expect = 9.2e-16
Identity = 46/137 (33.58%), Postives = 76/137 (55.47%), Query Frame = 0 

Query: 46  WPQRLFPNRLVAMIRRQQNLDLALQIFHYAGKYHPAFTHNYDTYHAIIYRLSRARAFEPV 105
           +P+ L P  ++ +++ ++N   A  +F  A + HP + H+   YH I+ RLS  R    V
Sbjct: 4   FPKSLSPKHVLKLLKSEKNPRAAFALFDSATR-HPGYAHSAVVYHHILRRLSETRMVNHV 63

Query: 106 ESLLLELQDSGINCSEDLFITVIRSYGLASRPKMALKTFLRI-QTFGVRRSVRSLNTLLN 165
             ++  ++     C ED+ ++VI++YG  S P  AL  F R+ + FG   ++RS NTLLN
Sbjct: 64  SRIVELIRSQECKCDEDVALSVIKTYGKNSMPDQALDVFKRMREIFGCEPAIRSYNTLLN 123

Query: 166 ALVQNNRFSSVHLLFKY 182
           A V+  ++  V  LF Y
Sbjct: 124 AFVEAKQWVKVESLFAY 139

[Close]
BLAST of CsaV3_3G027230 vs. TAIR10
Match: AT1G05600.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 78.2 bits (191), Expect = 1.7e-14
Identity = 45/173 (26.01%), Postives = 89/173 (51.45%), Query Frame = 0 

Query: 46  WPQRLFPNRLVAMIRRQQNLDLALQIFHYAGKYHPAFTHNYDTYHAIIYRLSRARAFEPV 105
           WP+ L P+ L  ++++Q+N   AL++F  A +  P++ HN   Y  +I  L ++     +
Sbjct: 6   WPRVLTPSLLSQILKKQKNPVTALKLFEEAKERFPSYGHNGSVYATMIDILGKSNRVLEM 65

Query: 106 ESLLLELQDSGINCSEDLFITVIRSYGLASRPKMALKTFLRIQTFGVRRSVRSLNTLLNA 165
           + ++  +++    C + +F +VIR++  A R + A+  F  +  F       S +TLL  
Sbjct: 66  KYVIERMKEDSCECKDSVFASVIRTFSRAGRLEDAISLFKSLHEFNCVNWSLSFDTLLQE 125

Query: 166 LVQNNRFSSVHLLFKYSKSKFGVVPNVFTCNILIKALCKKNDVEGARKVFDEM 219
           +V+ +   +   +F+     + V   +   N+L+K LC+ N  + A +VF EM
Sbjct: 126 MVKESELEAACHIFRKYCYGWEVNSRITALNLLMKVLCQVNRSDLASQVFQEM 178

[Close]
BLAST of CsaV3_3G027230 vs. TAIR10
Match: AT1G07740.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 77.0 bits (188), Expect = 3.9e-14
Identity = 43/140 (30.71%), Postives = 77/140 (55.00%), Query Frame = 0 

Query: 44  KPWPQRLFPNRLVAMIRRQQNLDLALQIFHYAGKYHPAFTHNYDTYHAIIYRLSRARAFE 103
           KPW +  F    +  ++  ++ + AL +FH   +    F H+Y +Y ++IY+L+++R F+
Sbjct: 45  KPWEEVPF----LTDLKEIEDPEEALSLFHQYQEM--GFRHDYPSYSSLIYKLAKSRNFD 104

Query: 104 PVESLLLELQDSGINCSEDLFITVIRSYGLASRPKMALKTFLRIQTFGVRRSVRSLNTLL 163
            V+ +L  ++   + C E LF+ +I+ YG A     A+  F +I +F   R+++SLNTL+
Sbjct: 105 AVDQILRLVRYRNVRCRESLFMGLIQHYGKAGSVDKAIDVFHKITSFDCVRTIQSLNTLI 164

Query: 164 NALVQNNRFSSVHLLFKYSK 184
           N LV N         F  +K
Sbjct: 165 NVLVDNGELEKAKSFFDGAK 178

[Close]
BLAST of CsaV3_3G027230 vs. Swiss-Prot
Match: sp|Q9FFE3|PP388_ARATH (Pentatricopeptide repeat-containing protein At5g16420, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g16420 PE=2 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 7.6e-68
Identity = 125/188 (66.49%), Postives = 154/188 (81.91%), Query Frame = 0 

Query: 34  LQSY-TVTPPIKPWPQRLFPNRLVAMIRRQQNLDLALQIFHYAGKYHPAFTHNYDTYHAI 93
           LQ Y T  PPIKPWPQRLFP RLV+MI +QQN+DLALQIF YAGK HP FTHNYDTYH+I
Sbjct: 30  LQQYCTEKPPIKPWPQRLFPKRLVSMITQQQNIDLALQIFLYAGKSHPGFTHNYDTYHSI 89

Query: 94  IYRLSRARAFEPVESLLLELQDS--GINCSEDLFITVIRSYGLASRPKMALKTFLRIQTF 153
           +++LSRARAF+PVESL+ +L++S   I C E+LFI ++R+YGLA R + +++ FLRI  F
Sbjct: 90  LFKLSRARAFDPVESLMADLRNSYPPIKCGENLFIDLLRNYGLAGRYESSMRIFLRIPDF 149

Query: 154 GVRRSVRSLNTLLNALVQNNRFSSVHLLFKYSKSKFGVVPNVFTCNILIKALCKKNDVEG 213
           GV+RSVRSLNTLLN L+QN RF  VH +FK SK  FG+ PN+FTCN+L+KALCKKND+E 
Sbjct: 150 GVKRSVRSLNTLLNVLIQNQRFDLVHAMFKNSKESFGITPNIFTCNLLVKALCKKNDIES 209

Query: 214 ARKVFDEM 219
           A KV DE+
Sbjct: 210 AYKVLDEI 217

[Close]
BLAST of CsaV3_3G027230 vs. Swiss-Prot
Match: sp|Q9FNL2|PP418_ARATH (Pentatricopeptide repeat-containing protein At5g46100 OS=Arabidopsis thaliana OX=3702 GN=At5g46100 PE=2 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 4.7e-17
Identity = 50/178 (28.09%), Postives = 104/178 (58.43%), Query Frame = 0 

Query: 46  WPQRLFPNRLVAMIRRQQNLDLALQIFHYA-GKYHPAFTHNYDTYHAIIYRLSRARAFEP 105
           W + + P++++ ++R +++++ ++ +F  A  +Y   + H+  ++  ++ RL  A  F+ 
Sbjct: 10  WSKNITPSQVIKLMRAEKDVEKSMAVFDSATAEYANGYVHDQSSFGYMVLRLVSANKFKA 69

Query: 106 VESLLLELQDSGINCSEDLFITVIRSYGLASRPKMALKTFLRIQTFGVRRSVRSLNTLLN 165
            E L++ ++      SED+ +++ R YG   RP  +L+ F +++ F    S ++  T+L 
Sbjct: 70  AEDLIVRMKIENCVVSEDILLSICRGYGRVHRPFDSLRVFHKMKDFDCDPSQKAYVTVLA 129

Query: 166 ALVQNNRFSSVHLLFKYSKS--KFGVVPNVFTCNILIKALCKKN-DVEGARKVFDEMP 220
            LV+ N+   ++L FK+ K+  + G+ P V + N+LIKALC+ +  V+   K+F EMP
Sbjct: 130 ILVEENQ---LNLAFKFYKNMREIGLPPTVASLNVLIKALCRNDGTVDAGLKIFLEMP 184

[Close]
BLAST of CsaV3_3G027230 vs. Swiss-Prot
Match: sp|Q9SS81|PP221_ARATH (Pentatricopeptide repeat-containing protein At3g09060 OS=Arabidopsis thaliana OX=3702 GN=At3g09060 PE=2 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 1.7e-14
Identity = 46/137 (33.58%), Postives = 76/137 (55.47%), Query Frame = 0 

Query: 46  WPQRLFPNRLVAMIRRQQNLDLALQIFHYAGKYHPAFTHNYDTYHAIIYRLSRARAFEPV 105
           +P+ L P  ++ +++ ++N   A  +F  A + HP + H+   YH I+ RLS  R    V
Sbjct: 4   FPKSLSPKHVLKLLKSEKNPRAAFALFDSATR-HPGYAHSAVVYHHILRRLSETRMVNHV 63

Query: 106 ESLLLELQDSGINCSEDLFITVIRSYGLASRPKMALKTFLRI-QTFGVRRSVRSLNTLLN 165
             ++  ++     C ED+ ++VI++YG  S P  AL  F R+ + FG   ++RS NTLLN
Sbjct: 64  SRIVELIRSQECKCDEDVALSVIKTYGKNSMPDQALDVFKRMREIFGCEPAIRSYNTLLN 123

Query: 166 ALVQNNRFSSVHLLFKY 182
           A V+  ++  V  LF Y
Sbjct: 124 AFVEAKQWVKVESLFAY 139

[Close]
BLAST of CsaV3_3G027230 vs. Swiss-Prot
Match: sp|Q9SYK1|PPR11_ARATH (Pentatricopeptide repeat-containing protein At1g05600 OS=Arabidopsis thaliana OX=3702 GN=At1g05600 PE=2 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 3.1e-13
Identity = 45/173 (26.01%), Postives = 89/173 (51.45%), Query Frame = 0 

Query: 46  WPQRLFPNRLVAMIRRQQNLDLALQIFHYAGKYHPAFTHNYDTYHAIIYRLSRARAFEPV 105
           WP+ L P+ L  ++++Q+N   AL++F  A +  P++ HN   Y  +I  L ++     +
Sbjct: 6   WPRVLTPSLLSQILKKQKNPVTALKLFEEAKERFPSYGHNGSVYATMIDILGKSNRVLEM 65

Query: 106 ESLLLELQDSGINCSEDLFITVIRSYGLASRPKMALKTFLRIQTFGVRRSVRSLNTLLNA 165
           + ++  +++    C + +F +VIR++  A R + A+  F  +  F       S +TLL  
Sbjct: 66  KYVIERMKEDSCECKDSVFASVIRTFSRAGRLEDAISLFKSLHEFNCVNWSLSFDTLLQE 125

Query: 166 LVQNNRFSSVHLLFKYSKSKFGVVPNVFTCNILIKALCKKNDVEGARKVFDEM 219
           +V+ +   +   +F+     + V   +   N+L+K LC+ N  + A +VF EM
Sbjct: 126 MVKESELEAACHIFRKYCYGWEVNSRITALNLLMKVLCQVNRSDLASQVFQEM 178

[Close]
BLAST of CsaV3_3G027230 vs. Swiss-Prot
Match: sp|Q9LQQ1|PPR20_ARATH (Pentatricopeptide repeat-containing protein At1g07740, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g07740 PE=2 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 7.0e-13
Identity = 43/140 (30.71%), Postives = 77/140 (55.00%), Query Frame = 0 

Query: 44  KPWPQRLFPNRLVAMIRRQQNLDLALQIFHYAGKYHPAFTHNYDTYHAIIYRLSRARAFE 103
           KPW +  F    +  ++  ++ + AL +FH   +    F H+Y +Y ++IY+L+++R F+
Sbjct: 45  KPWEEVPF----LTDLKEIEDPEEALSLFHQYQEM--GFRHDYPSYSSLIYKLAKSRNFD 104

Query: 104 PVESLLLELQDSGINCSEDLFITVIRSYGLASRPKMALKTFLRIQTFGVRRSVRSLNTLL 163
            V+ +L  ++   + C E LF+ +I+ YG A     A+  F +I +F   R+++SLNTL+
Sbjct: 105 AVDQILRLVRYRNVRCRESLFMGLIQHYGKAGSVDKAIDVFHKITSFDCVRTIQSLNTLI 164

Query: 164 NALVQNNRFSSVHLLFKYSK 184
           N LV N         F  +K
Sbjct: 165 NVLVDNGELEKAKSFFDGAK 178

[Close]
BLAST of CsaV3_3G027230 vs. TrEMBL
Match: tr|A0A0A0LDM6|A0A0A0LDM6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G589540 PE=4 SV=1)

HSP 1 Score: 440.3 bits (1131), Expect = 6.3e-120
Identity = 219/219 (100.00%), Postives = 219/219 (100.00%), Query Frame = 0 

Query: 1   MRCYFRSNRFKNISLHTPISIVPLRFIFAVETPLQSYTVTPPIKPWPQRLFPNRLVAMIR 60
           MRCYFRSNRFKNISLHTPISIVPLRFIFAVETPLQSYTVTPPIKPWPQRLFPNRLVAMIR
Sbjct: 1   MRCYFRSNRFKNISLHTPISIVPLRFIFAVETPLQSYTVTPPIKPWPQRLFPNRLVAMIR 60

Query: 61  RQQNLDLALQIFHYAGKYHPAFTHNYDTYHAIIYRLSRARAFEPVESLLLELQDSGINCS 120
           RQQNLDLALQIFHYAGKYHPAFTHNYDTYHAIIYRLSRARAFEPVESLLLELQDSGINCS
Sbjct: 61  RQQNLDLALQIFHYAGKYHPAFTHNYDTYHAIIYRLSRARAFEPVESLLLELQDSGINCS 120

Query: 121 EDLFITVIRSYGLASRPKMALKTFLRIQTFGVRRSVRSLNTLLNALVQNNRFSSVHLLFK 180
           EDLFITVIRSYGLASRPKMALKTFLRIQTFGVRRSVRSLNTLLNALVQNNRFSSVHLLFK
Sbjct: 121 EDLFITVIRSYGLASRPKMALKTFLRIQTFGVRRSVRSLNTLLNALVQNNRFSSVHLLFK 180

Query: 181 YSKSKFGVVPNVFTCNILIKALCKKNDVEGARKVFDEMP 220
           YSKSKFGVVPNVFTCNILIKALCKKNDVEGARKVFDEMP
Sbjct: 181 YSKSKFGVVPNVFTCNILIKALCKKNDVEGARKVFDEMP 219

[Close]
BLAST of CsaV3_3G027230 vs. TrEMBL
Match: tr|A0A1S3BPE8|A0A1S3BPE8_CUCME (pentatricopeptide repeat-containing protein At5g16420, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103491773 PE=4 SV=1)

HSP 1 Score: 425.6 bits (1093), Expect = 1.6e-115
Identity = 210/219 (95.89%), Postives = 216/219 (98.63%), Query Frame = 0 

Query: 1   MRCYFRSNRFKNISLHTPISIVPLRFIFAVETPLQSYTVTPPIKPWPQRLFPNRLVAMIR 60
           MRCYFRSNRFK+ISLHTPISIVPLRFIFA+ETPLQSYTVTPPIKPWPQRLFP RLVAMIR
Sbjct: 1   MRCYFRSNRFKHISLHTPISIVPLRFIFAIETPLQSYTVTPPIKPWPQRLFPKRLVAMIR 60

Query: 61  RQQNLDLALQIFHYAGKYHPAFTHNYDTYHAIIYRLSRARAFEPVESLLLELQDSGINCS 120
           RQQNLDLALQIFHYAGK+HPAF+HNYDTYHAII+RLSRARAFEPVESLLLELQD+GINCS
Sbjct: 61  RQQNLDLALQIFHYAGKFHPAFSHNYDTYHAIIHRLSRARAFEPVESLLLELQDAGINCS 120

Query: 121 EDLFITVIRSYGLASRPKMALKTFLRIQTFGVRRSVRSLNTLLNALVQNNRFSSVHLLFK 180
           EDLFITVIRSYGLA RPKMALKTFLRIQTFGVRRSVRSLNTLLNALVQNNRFS VHLLFK
Sbjct: 121 EDLFITVIRSYGLAGRPKMALKTFLRIQTFGVRRSVRSLNTLLNALVQNNRFSLVHLLFK 180

Query: 181 YSKSKFGVVPNVFTCNILIKALCKKNDVEGARKVFDEMP 220
           YSKSKFGVVPNVFTCNILIKALCKKNDVEGARKVFDEMP
Sbjct: 181 YSKSKFGVVPNVFTCNILIKALCKKNDVEGARKVFDEMP 219

[Close]
BLAST of CsaV3_3G027230 vs. TrEMBL
Match: tr|A0A2I4E5Y7|A0A2I4E5Y7_9ROSI (pentatricopeptide repeat-containing protein At5g16420, mitochondrial OS=Juglans regia OX=51240 GN=LOC108986597 PE=4 SV=1)

HSP 1 Score: 298.5 bits (763), Expect = 3.0e-77
Identity = 147/189 (77.78%), Postives = 166/189 (87.83%), Query Frame = 0 

Query: 31  ETPLQSYTVTPPIKPWPQRLFPNRLVAMIRRQQNLDLALQIFHYAGKYHPAFTHNYDTYH 90
           +T LQSYTVTPPIKPWPQRL+P RLVAM+ RQQNLDLALQIF++A K+HP F+ NYDTYH
Sbjct: 31  QTLLQSYTVTPPIKPWPQRLYPKRLVAMVTRQQNLDLALQIFYHASKFHPGFSQNYDTYH 90

Query: 91  AIIYRLSRARAFEPVESLLLELQDSGINCSEDLFITVIRSYGLASRPKMALKTFLRIQTF 150
           AII RLSRAR F PVESLL EL+ S I C E+LFI VIRSYGLA RP  ALKTFLRI+TF
Sbjct: 91  AIIRRLSRAREFAPVESLLSELRHSQIKCGENLFIDVIRSYGLAGRPDSALKTFLRIETF 150

Query: 151 GVRRSVRSLNTLLNALVQNNRFSSVHLLFKYSKSKFGVVPNVFTCNILIKALCKKNDVEG 210
           GV+RSVRSLNTLLNALVQN R++ VH+LFK SK++FGVVPNVFTCNIL+KA+CKKNDVEG
Sbjct: 151 GVQRSVRSLNTLLNALVQNKRYTLVHVLFKNSKARFGVVPNVFTCNILLKAMCKKNDVEG 210

Query: 211 ARKVFDEMP 220
           A +V DEMP
Sbjct: 211 AVRVLDEMP 219

[Close]
BLAST of CsaV3_3G027230 vs. TrEMBL
Match: tr|A0A061E045|A0A061E045_THECC (Pentatricopeptide repeat (PPR-like) superfamily protein OS=Theobroma cacao OX=3641 GN=TCM_005091 PE=4 SV=1)

HSP 1 Score: 298.5 bits (763), Expect = 3.0e-77
Identity = 146/186 (78.49%), Postives = 166/186 (89.25%), Query Frame = 0 

Query: 34  LQSYTVTPPIKPWPQRLFPNRLVAMIRRQQNLDLALQIFHYAGKYHPAFTHNYDTYHAII 93
           LQ YTVTPPIKPWPQRL+P RLV+MI  QQNLDLALQIF YAGK+HP F HNYDTYH+II
Sbjct: 40  LQYYTVTPPIKPWPQRLYPKRLVSMITCQQNLDLALQIFLYAGKFHPNFYHNYDTYHSII 99

Query: 94  YRLSRARAFEPVESLLLELQDSGINCSEDLFITVIRSYGLASRPKMALKTFLRIQTFGVR 153
           ++L RARAFEP+ESLL +LQDS I C E+LFI+VIR+YGLASRPK+ALKTFLRI+ F V+
Sbjct: 100 HKLCRARAFEPMESLLSQLQDSQIKCGENLFISVIRNYGLASRPKLALKTFLRIENFNVQ 159

Query: 154 RSVRSLNTLLNALVQNNRFSSVHLLFKYSKSKFGVVPNVFTCNILIKALCKKNDVEGARK 213
           RSVRSLNTLLNALVQN R+  VH++FK SK+KFGVVPNVFTCNILIKALC++NDVE A K
Sbjct: 160 RSVRSLNTLLNALVQNKRYDLVHIMFKNSKTKFGVVPNVFTCNILIKALCQENDVEAAYK 219

Query: 214 VFDEMP 220
           VFDEMP
Sbjct: 220 VFDEMP 225

[Close]
BLAST of CsaV3_3G027230 vs. TrEMBL
Match: tr|A0A2P4K649|A0A2P4K649_QUESU (Pentatricopeptide repeat-containing protein, mitochondrial OS=Quercus suber OX=58331 GN=CFP56_53769 PE=4 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 6.6e-77
Identity = 144/186 (77.42%), Postives = 164/186 (88.17%), Query Frame = 0 

Query: 34  LQSYTVTPPIKPWPQRLFPNRLVAMIRRQQNLDLALQIFHYAGKYHPAFTHNYDTYHAII 93
           LQSYTVTPP+KPWPQRL+P RLV+MI RQQNLDLALQIFHYAGK+HP F+HNYDTYHAII
Sbjct: 28  LQSYTVTPPLKPWPQRLYPKRLVSMITRQQNLDLALQIFHYAGKFHPDFSHNYDTYHAII 87

Query: 94  YRLSRARAFEPVESLLLELQDSGINCSEDLFITVIRSYGLASRPKMALKTFLRIQTFGVR 153
            RL RAR F PVESLL +L+ S I C E+LF+ VIRSYGLAS+P +A+KTFLRI TF V+
Sbjct: 88  QRLCRAREFNPVESLLSDLRHSHIKCGENLFVDVIRSYGLASKPDLAVKTFLRIHTFDVQ 147

Query: 154 RSVRSLNTLLNALVQNNRFSSVHLLFKYSKSKFGVVPNVFTCNILIKALCKKNDVEGARK 213
           RSVRSLNTLLNALVQN R+  VH+LFK S+++FGVVPNVFTCNILIKA+CKKNDVEGA +
Sbjct: 148 RSVRSLNTLLNALVQNKRYGLVHVLFKNSQTRFGVVPNVFTCNILIKAMCKKNDVEGALQ 207

Query: 214 VFDEMP 220
           V DEMP
Sbjct: 208 VLDEMP 213

The following BLAST results are available for this feature:
BLAST of CsaV3_3G027230 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004145716.19.6e-120100.00PREDICTED: pentatricopeptide repeat-containing protein At5g16420, mitochondrial ... [more]
XP_008450076.12.4e-11595.89PREDICTED: pentatricopeptide repeat-containing protein At5g16420, mitochondrial ... [more]
XP_022154201.11.3e-10084.02pentatricopeptide repeat-containing protein At5g16420, mitochondrial [Momordica ... [more]
XP_022982687.16.7e-9783.72pentatricopeptide repeat-containing protein At5g16420, mitochondrial [Cucurbita ... [more]
XP_023528110.11.5e-9684.11pentatricopeptide repeat-containing protein At5g16420, mitochondrial [Cucurbita ... [more]
BLAST of CsaV3_3G027230 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G16420.14.2e-6966.49Pentatricopeptide repeat (PPR-like) superfamily protein[more]
AT5G46100.12.6e-1828.09Pentatricopeptide repeat (PPR) superfamily protein[more]
AT3G09060.19.2e-1633.58Pentatricopeptide repeat (PPR) superfamily protein[more]
AT1G05600.11.7e-1426.01Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT1G07740.13.9e-1430.71Tetratricopeptide repeat (TPR)-like superfamily protein[more]
BLAST of CsaV3_3G027230 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9FFE3|PP388_ARATH7.6e-6866.49Pentatricopeptide repeat-containing protein At5g16420, mitochondrial OS=Arabidop... [more]
sp|Q9FNL2|PP418_ARATH4.7e-1728.09Pentatricopeptide repeat-containing protein At5g46100 OS=Arabidopsis thaliana OX... [more]
sp|Q9SS81|PP221_ARATH1.7e-1433.58Pentatricopeptide repeat-containing protein At3g09060 OS=Arabidopsis thaliana OX... [more]
sp|Q9SYK1|PPR11_ARATH3.1e-1326.01Pentatricopeptide repeat-containing protein At1g05600 OS=Arabidopsis thaliana OX... [more]
sp|Q9LQQ1|PPR20_ARATH7.0e-1330.71Pentatricopeptide repeat-containing protein At1g07740, mitochondrial OS=Arabidop... [more]
BLAST of CsaV3_3G027230 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LDM6|A0A0A0LDM6_CUCSA6.3e-120100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G589540 PE=4 SV=1[more]
tr|A0A1S3BPE8|A0A1S3BPE8_CUCME1.6e-11595.89pentatricopeptide repeat-containing protein At5g16420, mitochondrial OS=Cucumis ... [more]
tr|A0A2I4E5Y7|A0A2I4E5Y7_9ROSI3.0e-7777.78pentatricopeptide repeat-containing protein At5g16420, mitochondrial OS=Juglans ... [more]
tr|A0A061E045|A0A061E045_THECC3.0e-7778.49Pentatricopeptide repeat (PPR-like) superfamily protein OS=Theobroma cacao OX=36... [more]
tr|A0A2P4K649|A0A2P4K649_QUESU6.6e-7777.42Pentatricopeptide repeat-containing protein, mitochondrial OS=Quercus suber OX=5... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0015986 ATP synthesis coupled proton transport
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
molecular_function GO:0016668 oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0046933 proton-transporting ATP synthase activity, rotational mechanism
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G027230.1CsaV3_3G027230.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 276..397
e-value: 1.2E-29
score: 105.8
coord: 398..528
e-value: 4.5E-25
score: 90.8
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 173..275
e-value: 6.9E-31
score: 109.0
coord: 48..172
e-value: 5.4E-16
score: 60.4
IPR002885Pentatricopeptide repeatPFAMPF12854PPR_1coord: 361..392
e-value: 9.6E-6
score: 25.1
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 193..227
e-value: 2.3E-11
score: 41.1
coord: 264..296
e-value: 8.7E-12
score: 42.5
coord: 298..331
e-value: 3.6E-6
score: 24.8
coord: 335..366
e-value: 6.1E-6
score: 24.1
coord: 437..470
e-value: 4.7E-8
score: 30.7
coord: 403..436
e-value: 3.2E-9
score: 34.4
coord: 228..262
e-value: 2.8E-5
score: 22.0
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 190..238
e-value: 3.1E-17
score: 62.4
coord: 402..448
e-value: 3.2E-16
score: 59.1
coord: 260..309
e-value: 9.9E-17
score: 60.8
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 366..396
score: 7.574
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 470..504
score: 7.761
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 261..295
score: 13.943
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 400..434
score: 12.781
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 435..469
score: 11.959
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 331..365
score: 9.931
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 296..330
score: 10.928
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 85..119
score: 7.355
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 191..225
score: 13.362
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 120..154
score: 6.697
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 226..260
score: 10.38
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 155..190
score: 7.245
NoneNo IPR availablePANTHERPTHR24015:SF322SUBFAMILY NOT NAMEDcoord: 35..516
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 35..516
NoneNo IPR availableSUPERFAMILYSSF81901HCP-likecoord: 264..442

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_3G027230CSPI03G25700Wild cucumber (PI 183967)cpicucB144
CsaV3_3G027230Cucsa.156420Cucumber (Gy14) v1cgycucB235
CsaV3_3G027230CmaCh14G007040Cucurbita maxima (Rimu)cmacucB0292
CsaV3_3G027230CmoCh14G007230Cucurbita moschata (Rifu)cmocucB0284
CsaV3_3G027230Cp4.1LG03g07130Cucurbita pepo (Zucchini)cpecucB0760
CsaV3_3G027230CsGy3G024120Cucumber (Gy14) v2cgybcucB117
CsaV3_3G027230Carg09674Silver-seed gourdcarcucB0467
CsaV3_3G027230Cla004050Watermelon (97103) v1cucwmB255
CsaV3_3G027230ClCG05G013300Watermelon (Charleston Gray)cucwcgB240
CsaV3_3G027230Lsi07G014620Bottle gourd (USVL1VR-Ls)cuclsiB256
CsaV3_3G027230MELO3C014863.2Melon (DHL92) v3.6.1cucmedB233
CsaV3_3G027230Cla97C05G094860Watermelon (97103) v2cucwmbB219
CsaV3_3G027230Bhi01G001590Wax gourdcucwgoB289
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_3G027230Cucumber (Chinese Long) v3cuccucB017
CsaV3_3G027230Silver-seed gourdcarcucB0399
CsaV3_3G027230Cucumber (Gy14) v2cgybcucB026
CsaV3_3G027230Cucumber (Gy14) v1cgycucB238
CsaV3_3G027230Cucurbita maxima (Rimu)cmacucB0085
CsaV3_3G027230Cucurbita maxima (Rimu)cmacucB0146
CsaV3_3G027230Cucurbita maxima (Rimu)cmacucB0148
CsaV3_3G027230Cucurbita moschata (Rifu)cmocucB0074
CsaV3_3G027230Cucurbita moschata (Rifu)cmocucB0128
CsaV3_3G027230Cucurbita moschata (Rifu)cmocucB0126
CsaV3_3G027230Cucurbita pepo (Zucchini)cpecucB0457
CsaV3_3G027230Cucurbita pepo (Zucchini)cpecucB0837
CsaV3_3G027230Cucurbita pepo (Zucchini)cpecucB0844
CsaV3_3G027230Wild cucumber (PI 183967)cpicucB028
CsaV3_3G027230Bottle gourd (USVL1VR-Ls)cuclsiB247
CsaV3_3G027230Melon (DHL92) v3.5.1cucmeB196
CsaV3_3G027230Melon (DHL92) v3.5.1cucmeB250
CsaV3_3G027230Melon (DHL92) v3.6.1cucmedB187
CsaV3_3G027230Watermelon (Charleston Gray)cucwcgB255
CsaV3_3G027230Watermelon (97103) v1cucwmB289
CsaV3_3G027230Watermelon (97103) v2cucwmbB234