Carg09674 (gene) Silver-seed gourd

Overview
NameCarg09674
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionPentatricopeptide repeat-containing protein, putative
LocationCucurbita_argyrosperma_scaffold_023 : 276325 .. 277926 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGCATTGCTTCCGCTGCAATAAATTCTTTCCAACTTCACTCCATGGCTCAATTTCCAATCTTCCTCTTCGTTTCATCTTCGCCGTTGATTCTTCTGTTCAATCCTACACCGTCACGCCGCCGATCAAGCCCTGGCCGCAGCGTCTCTATCCCAAGCGCCTCGTCGCTATGATCATTCGCCAACAGAATCTCGACCTCGCCCTTCAAATCTTCCACTACGCCGGCAAATATCATCCCGGATATTCCCATAATTACGATACTTATCATGCGATCATTCATCGTCTCTCTCGCGCTCGAGCTTTTGAACCTGTCGAGTCTTTGCTTGGGGAATTGAAGAATTCTGGTATCAATTGCGGTGAGGATTTGTTCATTTCTGTGATTAGAAACTATGGGCTTGCGGGCCGGCCGAAAATGGCTGTGAAAATGTTTATACGTATTCAAACCTTCGGTGTTCGACGCTCGGTGAGGTCGTTGAATACGTTGCTCAATGCTTTGGTGCAGAACAAACGGTTTTCTTTGGTACATTTGTTGTTTAAGCATTCGAGATCCAAATTTGGGGTCGTGCCTAATGTGTTTACTTGTAATATTTTGATCAAAGCGCTTTGCGAAAAGAATGATGTCGAGGGTGCACGGAAGGTGTCTGACGAAATGCCTGCTATGGGTATGGTTCCAAATGTGGTTACTTATACTACAATCTTAGGTGGTTATGTCGCAAGAGGCGATATGGTAAGTGCCAAGAGAGTTTTTGGTGAGCTTTTTGATCATGGTTGGCTTCCTGATGCGACTACTTATACAATTTTAATGAATGGGTACATTAAGCTAGGTAGATTCACTGAAGCTGTTAAGGTGATGGATGAAATGGAAGAAAATGGAGTTGAGCCAAATGATATAACTTATGGAGTCATTATTGAAGCTTATTGTAGGGAGAAGAAGTCTGGCGAAGCACTTAACCTGCTTAATGATATGCTTGAAAAGAAGTATGTACCAAGCTCAGCACTTTGCTGTAAGGTGATCGATGTTTTGTGCGGCGAGGGGAGGGTAAAGGAAGGTTGTAAGCTGTGGGGGAAGCTTTTGAATAAGAACTGTACTCCGGATAATGCTATTACAAGTACCCTTATTCATTGGCTTTGTAAGGAGGGGAATATATGGGAAGCAAGAGACTTATTTAACGAGTTCGAGAGGGGATCGATTCCAAGTTTATTAACTTATAACACGCTTATTGCAGGAATGTGTGAGATGGGGGAGTTGTGTGAAGCCGCTAGGTTGTGGGACGACATGTTGGAAAAGGGTTGTATGCCTAATGAATTTACTTATAACATGCTGATTAAAGGATTTCTTAAAGTTGGTAAAGCTGAGGAAGTGATTGAAGTAGCGGAGGAGATGTTGGATAAGGGATGCTTGCCAAATGAGTCAACTTACTCAATTTTGGCTGAAGAGCTCCTCAAATTGGGAAAAGAAGGAGAGTTCTTGAATGTTCTTTCGATGTTCGTCTCGAGCGGAGTTGTAGACGATAAAGCCTGGCATCTATTTGTACCCAAGTTTGTTTGCAATATGGACGAACAAGCAAATATGCTCGAGAAAATATTGATTGAAACTTGA

mRNA sequence

ATGTGGCATTGCTTCCGCTGCAATAAATTCTTTCCAACTTCACTCCATGGCTCAATTTCCAATCTTCCTCTTCGTTTCATCTTCGCCGTTGATTCTTCTGTTCAATCCTACACCGTCACGCCGCCGATCAAGCCCTGGCCGCAGCGTCTCTATCCCAAGCGCCTCGTCGCTATGATCATTCGCCAACAGAATCTCGACCTCGCCCTTCAAATCTTCCACTACGCCGGCAAATATCATCCCGGATATTCCCATAATTACGATACTTATCATGCGATCATTCATCGTCTCTCTCGCGCTCGAGCTTTTGAACCTGTCGAGTCTTTGCTTGGGGAATTGAAGAATTCTGGTATCAATTGCGGTGAGGATTTGTTCATTTCTGTGATTAGAAACTATGGGCTTGCGGGCCGGCCGAAAATGGCTGTGAAAATGTTTATACGTATTCAAACCTTCGGTGTTCGACGCTCGGTGAGGTCGTTGAATACGTTGCTCAATGCTTTGGTGCAGAACAAACGGTTTTCTTTGGTACATTTGTTGTTTAAGCATTCGAGATCCAAATTTGGGGTCGTGCCTAATGTGTTTACTTGTAATATTTTGATCAAAGCGCTTTGCGAAAAGAATGATGTCGAGGGTGCACGGAAGGTGTCTGACGAAATGCCTGCTATGGGTATGGTTCCAAATGTGGTTACTTATACTACAATCTTAGGTGGTTATGTCGCAAGAGGCGATATGGTAAGTGCCAAGAGAGTTTTTGGTGAGCTTTTTGATCATGGTTGGCTTCCTGATGCGACTACTTATACAATTTTAATGAATGGGTACATTAAGCTAGGTAGATTCACTGAAGCTGTTAAGGTGATGGATGAAATGGAAGAAAATGGAGTTGAGCCAAATGATATAACTTATGGAGTCATTATTGAAGCTTATTGTAGGGAGAAGAAGTCTGGCGAAGCACTTAACCTGCTTAATGATATGCTTGAAAAGAAGTATGTACCAAGCTCAGCACTTTGCTGTAAGGTGATCGATGTTTTGTGCGGCGAGGGGAGGGTAAAGGAAGGTTGTAAGCTGTGGGGGAAGCTTTTGAATAAGAACTGTACTCCGGATAATGCTATTACAAGTACCCTTATTCATTGGCTTTGTAAGGAGGGGAATATATGGGAAGCAAGAGACTTATTTAACGAGTTCGAGAGGGGATCGATTCCAAGTTTATTAACTTATAACACGCTTATTGCAGGAATGTGTGAGATGGGGGAGTTGTGTGAAGCCGCTAGGTTGTGGGACGACATGTTGGAAAAGGGTTGTATGCCTAATGAATTTACTTATAACATGCTGATTAAAGGATTTCTTAAAGTTGGTAAAGCTGAGGAAGTGATTGAAGTAGCGGAGGAGATGTTGGATAAGGGATGCTTGCCAAATGAGTCAACTTACTCAATTTTGGCTGAAGAGCTCCTCAAATTGGGAAAAGAAGGAGAGTTCTTGAATGTTCTTTCGATGTTCGTCTCGAGCGGAGTTGTAGACGATAAAGCCTGGCATCTATTTGTACCCAAGTTTGTTTGCAATATGGACGAACAAGCAAATATGCTCGAGAAAATATTGATTGAAACTTGA

Coding sequence (CDS)

ATGTGGCATTGCTTCCGCTGCAATAAATTCTTTCCAACTTCACTCCATGGCTCAATTTCCAATCTTCCTCTTCGTTTCATCTTCGCCGTTGATTCTTCTGTTCAATCCTACACCGTCACGCCGCCGATCAAGCCCTGGCCGCAGCGTCTCTATCCCAAGCGCCTCGTCGCTATGATCATTCGCCAACAGAATCTCGACCTCGCCCTTCAAATCTTCCACTACGCCGGCAAATATCATCCCGGATATTCCCATAATTACGATACTTATCATGCGATCATTCATCGTCTCTCTCGCGCTCGAGCTTTTGAACCTGTCGAGTCTTTGCTTGGGGAATTGAAGAATTCTGGTATCAATTGCGGTGAGGATTTGTTCATTTCTGTGATTAGAAACTATGGGCTTGCGGGCCGGCCGAAAATGGCTGTGAAAATGTTTATACGTATTCAAACCTTCGGTGTTCGACGCTCGGTGAGGTCGTTGAATACGTTGCTCAATGCTTTGGTGCAGAACAAACGGTTTTCTTTGGTACATTTGTTGTTTAAGCATTCGAGATCCAAATTTGGGGTCGTGCCTAATGTGTTTACTTGTAATATTTTGATCAAAGCGCTTTGCGAAAAGAATGATGTCGAGGGTGCACGGAAGGTGTCTGACGAAATGCCTGCTATGGGTATGGTTCCAAATGTGGTTACTTATACTACAATCTTAGGTGGTTATGTCGCAAGAGGCGATATGGTAAGTGCCAAGAGAGTTTTTGGTGAGCTTTTTGATCATGGTTGGCTTCCTGATGCGACTACTTATACAATTTTAATGAATGGGTACATTAAGCTAGGTAGATTCACTGAAGCTGTTAAGGTGATGGATGAAATGGAAGAAAATGGAGTTGAGCCAAATGATATAACTTATGGAGTCATTATTGAAGCTTATTGTAGGGAGAAGAAGTCTGGCGAAGCACTTAACCTGCTTAATGATATGCTTGAAAAGAAGTATGTACCAAGCTCAGCACTTTGCTGTAAGGTGATCGATGTTTTGTGCGGCGAGGGGAGGGTAAAGGAAGGTTGTAAGCTGTGGGGGAAGCTTTTGAATAAGAACTGTACTCCGGATAATGCTATTACAAGTACCCTTATTCATTGGCTTTGTAAGGAGGGGAATATATGGGAAGCAAGAGACTTATTTAACGAGTTCGAGAGGGGATCGATTCCAAGTTTATTAACTTATAACACGCTTATTGCAGGAATGTGTGAGATGGGGGAGTTGTGTGAAGCCGCTAGGTTGTGGGACGACATGTTGGAAAAGGGTTGTATGCCTAATGAATTTACTTATAACATGCTGATTAAAGGATTTCTTAAAGTTGGTAAAGCTGAGGAAGTGATTGAAGTAGCGGAGGAGATGTTGGATAAGGGATGCTTGCCAAATGAGTCAACTTACTCAATTTTGGCTGAAGAGCTCCTCAAATTGGGAAAAGAAGGAGAGTTCTTGAATGTTCTTTCGATGTTCGTCTCGAGCGGAGTTGTAGACGATAAAGCCTGGCATCTATTTGTACCCAAGTTTGTTTGCAATATGGACGAACAAGCAAATATGCTCGAGAAAATATTGATTGAAACTTGA

Protein sequence

MWHCFRCNKFFPTSLHGSISNLPLRFIFAVDSSVQSYTVTPPIKPWPQRLYPKRLVAMIIRQQNLDLALQIFHYAGKYHPGYSHNYDTYHAIIHRLSRARAFEPVESLLGELKNSGINCGEDLFISVIRNYGLAGRPKMAVKMFIRIQTFGVRRSVRSLNTLLNALVQNKRFSLVHLLFKHSRSKFGVVPNVFTCNILIKALCEKNDVEGARKVSDEMPAMGMVPNVVTYTTILGGYVARGDMVSAKRVFGELFDHGWLPDATTYTILMNGYIKLGRFTEAVKVMDEMEENGVEPNDITYGVIIEAYCREKKSGEALNLLNDMLEKKYVPSSALCCKVIDVLCGEGRVKEGCKLWGKLLNKNCTPDNAITSTLIHWLCKEGNIWEARDLFNEFERGSIPSLLTYNTLIAGMCEMGELCEAARLWDDMLEKGCMPNEFTYNMLIKGFLKVGKAEEVIEVAEEMLDKGCLPNESTYSILAEELLKLGKEGEFLNVLSMFVSSGVVDDKAWHLFVPKFVCNMDEQANMLEKILIET
Homology
[Close]
BLAST of Carg09674 vs. NCBI nr
Match: XP_022934977.1 (pentatricopeptide repeat-containing protein At5g16420, mitochondrial [Cucurbita moschata] >XP_022934978.1 pentatricopeptide repeat-containing protein At5g16420, mitochondrial [Cucurbita moschata] >XP_022934979.1 pentatricopeptide repeat-containing protein At5g16420, mitochondrial [Cucurbita moschata] >XP_022934980.1 pentatricopeptide repeat-containing protein At5g16420, mitochondrial [Cucurbita moschata] >XP_022934981.1 pentatricopeptide repeat-containing protein At5g16420, mitochondrial [Cucurbita moschata] >XP_022934982.1 pentatricopeptide repeat-containing protein At5g16420, mitochondrial [Cucurbita moschata] >XP_022934983.1 pentatricopeptide repeat-containing protein At5g16420, mitochondrial [Cucurbita moschata] >XP_022934984.1 pentatricopeptide repeat-containing protein At5g16420, mitochondrial [Cucurbita moschata] >XP_022934985.1 pentatricopeptide repeat-containing protein At5g16420, mitochondrial [Cucurbita moschata])

HSP 1 Score: 447.6 bits (1150), Expect = 6.0e-122
Identity = 526/533 (98.69%), Postives = 529/533 (99.25%), Query Frame = 0 

Query: 1   MWHCFRCNKFFPTSLHGSISNLPLRFIFAVDSSVQSYTVTPPIKPWPQRLYPKRLVAMII 60
           MWHC R NKFFPTS HG I+NLPLRFIFAVDSSVQSYTVTPPIKPWPQRLYPKRLVAMII
Sbjct: 1   MWHCLRYNKFFPTSFHGPITNLPLRFIFAVDSSVQSYTVTPPIKPWPQRLYPKRLVAMII 60

Query: 61  RQQNLDLALQIFHYAGKYHPGYSHNYDTYHAIIHRLSRARAFEPVESLLGELKNSGINCG 120
           RQQNLDLALQIFHYAGKYHPG+SHNYDTYHAIIHRLSRARAFEPVESLLGELKNSGINCG
Sbjct: 61  RQQNLDLALQIFHYAGKYHPGFSHNYDTYHAIIHRLSRARAFEPVESLLGELKNSGINCG 120

Query: 121 EDLFISVIRNYGLAGRPKMAVKMFIRIQTFGVRRSVRSLNTLLNALVQNKRFSLVHLLFK 180
           EDLFISVIRNYGLAGRPKMAVKMF+RIQTFGVRRSVRSLNTLLNALVQNKRFSLVHLLFK
Sbjct: 121 EDLFISVIRNYGLAGRPKMAVKMFLRIQTFGVRRSVRSLNTLLNALVQNKRFSLVHLLFK 180

Query: 181 HSRSKFGVVPNVFTCNILIKALCEKNDVEGARKVSDEMPXXXXXXXXXXXXXXXXXXXXX 240
           HSRSKFGVVPNVFTCNILIKALCEKNDVEGARKVSDEMPXXXXXXXXXXXXXXXXXXXXX
Sbjct: 181 HSRSKFGVVPNVFTCNILIKALCEKNDVEGARKVSDEMPXXXXXXXXXXXXXXXXXXXXX 240

Query: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360

Query: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFERGSIPSLLTYNTLIAGMCEMGELCEA 420
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFERGSIPSLLTYNTLIAGMCEMGELCEA
Sbjct: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFERGSIPSLLTYNTLIAGMCEMGELCEA 420

Query: 421 ARLWDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 480
           ARLWDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 421 ARLWDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 480

Query: 481 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPKFVCNMDEQANMLEKILIET 534
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPKFVCNMDEQANMLEKILIET
Sbjct: 481 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPKFVCNMDEQANMLEKILIET 533

[Close]
BLAST of Carg09674 vs. NCBI nr
Match: XP_023528110.1 (pentatricopeptide repeat-containing protein At5g16420, mitochondrial [Cucurbita pepo subsp. pepo] >XP_023528111.1 pentatricopeptide repeat-containing protein At5g16420, mitochondrial [Cucurbita pepo subsp. pepo] >XP_023528112.1 pentatricopeptide repeat-containing protein At5g16420, mitochondrial [Cucurbita pepo subsp. pepo] >XP_023528113.1 pentatricopeptide repeat-containing protein At5g16420, mitochondrial [Cucurbita pepo subsp. pepo] >XP_023528114.1 pentatricopeptide repeat-containing protein At5g16420, mitochondrial [Cucurbita pepo subsp. pepo] >XP_023528115.1 pentatricopeptide repeat-containing protein At5g16420, mitochondrial [Cucurbita pepo subsp. pepo] >XP_023528116.1 pentatricopeptide repeat-containing protein At5g16420, mitochondrial [Cucurbita pepo subsp. pepo] >XP_023528117.1 pentatricopeptide repeat-containing protein At5g16420, mitochondrial [Cucurbita pepo subsp. pepo] >XP_023528118.1 pentatricopeptide repeat-containing protein At5g16420, mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 434.9 bits (1117), Expect = 4.0e-118
Identity = 212/219 (96.80%), Postives = 214/219 (97.72%), Query Frame = 0 

Query: 1   MWHCFRCNKFFPTSLHGSISNLPLRFIFAVDSSVQSYTVTPPIKPWPQRLYPKRLVAMII 60
           MWHC R NKFFPTSLH  ISNLPLRFIF VDSSVQSYTVTPPIKPWPQRLYPKRLVAMII
Sbjct: 1   MWHCLRYNKFFPTSLHSPISNLPLRFIFTVDSSVQSYTVTPPIKPWPQRLYPKRLVAMII 60

Query: 61  RQQNLDLALQIFHYAGKYHPGYSHNYDTYHAIIHRLSRARAFEPVESLLGELKNSGINCG 120
           RQQNLDLALQIFHYAGKYHPG+SHNYDTYHAIIHRLSRARAFEPVESLLGELKNSGINCG
Sbjct: 61  RQQNLDLALQIFHYAGKYHPGFSHNYDTYHAIIHRLSRARAFEPVESLLGELKNSGINCG 120

Query: 121 EDLFISVIRNYGLAGRPKMAVKMFIRIQTFGVRRSVRSLNTLLNALVQNKRFSLVHLLFK 180
           EDLFISVIRNYGLAGRPKMAVKMF+RIQTFGVRRSVRSLNTLLNALVQNKRFSLVHLLFK
Sbjct: 121 EDLFISVIRNYGLAGRPKMAVKMFLRIQTFGVRRSVRSLNTLLNALVQNKRFSLVHLLFK 180

Query: 181 HSRSKFGVVPNVFTCNILIKALCEKNDVEGARKVSDEMP 220
           HSRSKFGVVPNVFTCNILIKALCEKNDVEGARKVSDEMP
Sbjct: 181 HSRSKFGVVPNVFTCNILIKALCEKNDVEGARKVSDEMP 219

[Close]
BLAST of Carg09674 vs. NCBI nr
Match: XP_022982687.1 (pentatricopeptide repeat-containing protein At5g16420, mitochondrial [Cucurbita maxima] >XP_022982688.1 pentatricopeptide repeat-containing protein At5g16420, mitochondrial [Cucurbita maxima] >XP_022982689.1 pentatricopeptide repeat-containing protein At5g16420, mitochondrial [Cucurbita maxima] >XP_022982690.1 pentatricopeptide repeat-containing protein At5g16420, mitochondrial [Cucurbita maxima] >XP_022982691.1 pentatricopeptide repeat-containing protein At5g16420, mitochondrial [Cucurbita maxima] >XP_022982693.1 pentatricopeptide repeat-containing protein At5g16420, mitochondrial [Cucurbita maxima] >XP_022982694.1 pentatricopeptide repeat-containing protein At5g16420, mitochondrial [Cucurbita maxima] >XP_022982695.1 pentatricopeptide repeat-containing protein At5g16420, mitochondrial [Cucurbita maxima] >XP_022982696.1 pentatricopeptide repeat-containing protein At5g16420, mitochondrial [Cucurbita maxima] >XP_022982697.1 pentatricopeptide repeat-containing protein At5g16420, mitochondrial [Cucurbita maxima] >XP_022982698.1 pentatricopeptide repeat-containing protein At5g16420, mitochondrial [Cucurbita maxima] >XP_022982699.1 pentatricopeptide repeat-containing protein At5g16420, mitochondrial [Cucurbita maxima])

HSP 1 Score: 422.5 bits (1085), Expect = 2.1e-114
Identity = 206/219 (94.06%), Postives = 211/219 (96.35%), Query Frame = 0 

Query: 1   MWHCFRCNKFFPTSLHGSISNLPLRFIFAVDSSVQSYTVTPPIKPWPQRLYPKRLVAMII 60
           MWHCFR NKFFPTSLH  ISNL LRFIF+VDSSVQSYTVTPPIKPWPQRLYPKRLVAM+I
Sbjct: 1   MWHCFRYNKFFPTSLHSPISNLSLRFIFSVDSSVQSYTVTPPIKPWPQRLYPKRLVAMVI 60

Query: 61  RQQNLDLALQIFHYAGKYHPGYSHNYDTYHAIIHRLSRARAFEPVESLLGELKNSGINCG 120
           RQQNLDLALQIFHYAGK+HPG+SHNYDTYHAIIHRLSRARAFEPVESLLGELKNSGINCG
Sbjct: 61  RQQNLDLALQIFHYAGKFHPGFSHNYDTYHAIIHRLSRARAFEPVESLLGELKNSGINCG 120

Query: 121 EDLFISVIRNYGLAGRPKMAVKMFIRIQTFGVRRSVRSLNTLLNALVQNKRFSLVHLLFK 180
           EDLFISVIRNYGLA RPKMAVK F+RIQTFGVRRSVRSLNTLLNALVQNKRFSLVHLLFK
Sbjct: 121 EDLFISVIRNYGLASRPKMAVKTFLRIQTFGVRRSVRSLNTLLNALVQNKRFSLVHLLFK 180

Query: 181 HSRSKFGVVPNVFTCNILIKALCEKNDVEGARKVSDEMP 220
           HSRSKFGVV NVFTCNILIKALCEKNDVEGARKV DEMP
Sbjct: 181 HSRSKFGVVSNVFTCNILIKALCEKNDVEGARKVFDEMP 219

[Close]
BLAST of Carg09674 vs. NCBI nr
Match: XP_022154201.1 (pentatricopeptide repeat-containing protein At5g16420, mitochondrial [Momordica charantia] >XP_022154202.1 pentatricopeptide repeat-containing protein At5g16420, mitochondrial [Momordica charantia])

HSP 1 Score: 374.8 bits (961), Expect = 4.9e-100
Identity = 183/219 (83.56%), Postives = 201/219 (91.78%), Query Frame = 0 

Query: 1   MWHCFRCNKFFPTSLHGSISNLPLRFIFAVDSSVQSYTVTPPIKPWPQRLYPKRLVAMII 60
           MW     NK    SLH SI+ +PLRFIFAVDSS+QSYTVTPPIKPWPQRLYP+RLV+MII
Sbjct: 1   MWCYISRNKIKSISLHSSIAIVPLRFIFAVDSSLQSYTVTPPIKPWPQRLYPRRLVSMII 60

Query: 61  RQQNLDLALQIFHYAGKYHPGYSHNYDTYHAIIHRLSRARAFEPVESLLGELKNSGINCG 120
            QQNLDLALQIFH+AGK+HPG+SHNYDTYHAI+HRLSRARAFEPVESLL +L++SGI CG
Sbjct: 61  GQQNLDLALQIFHHAGKFHPGFSHNYDTYHAIVHRLSRARAFEPVESLLLDLQSSGIKCG 120

Query: 121 EDLFISVIRNYGLAGRPKMAVKMFIRIQTFGVRRSVRSLNTLLNALVQNKRFSLVHLLFK 180
           EDLFI+VIR+YGLAGRPK+AVK F+RIQTFGVRRSVRSLNTLLNALVQN RFSLVHLLFK
Sbjct: 121 EDLFITVIRSYGLAGRPKLAVKTFLRIQTFGVRRSVRSLNTLLNALVQNNRFSLVHLLFK 180

Query: 181 HSRSKFGVVPNVFTCNILIKALCEKNDVEGARKVSDEMP 220
           HS SKFGVVPNVFTCNILIKALC+KND+EGARKV DEMP
Sbjct: 181 HSNSKFGVVPNVFTCNILIKALCKKNDIEGARKVFDEMP 219

[Close]
BLAST of Carg09674 vs. NCBI nr
Match: XP_008450076.1 (PREDICTED: pentatricopeptide repeat-containing protein At5g16420, mitochondrial [Cucumis melo] >XP_008450077.1 PREDICTED: pentatricopeptide repeat-containing protein At5g16420, mitochondrial [Cucumis melo])

HSP 1 Score: 370.2 bits (949), Expect = 1.2e-98
Identity = 181/215 (84.19%), Postives = 200/215 (93.02%), Query Frame = 0 

Query: 5   FRCNKFFPTSLHGSISNLPLRFIFAVDSSVQSYTVTPPIKPWPQRLYPKRLVAMIIRQQN 64
           FR N+F   SLH  IS +PLRFIFA+++ +QSYTVTPPIKPWPQRL+PKRLVAMI RQQN
Sbjct: 5   FRSNRFKHISLHTPISIVPLRFIFAIETPLQSYTVTPPIKPWPQRLFPKRLVAMIRRQQN 64

Query: 65  LDLALQIFHYAGKYHPGYSHNYDTYHAIIHRLSRARAFEPVESLLGELKNSGINCGEDLF 124
           LDLALQIFHYAGK+HP +SHNYDTYHAIIHRLSRARAFEPVESLL EL+++GINC EDLF
Sbjct: 65  LDLALQIFHYAGKFHPAFSHNYDTYHAIIHRLSRARAFEPVESLLLELQDAGINCSEDLF 124

Query: 125 ISVIRNYGLAGRPKMAVKMFIRIQTFGVRRSVRSLNTLLNALVQNKRFSLVHLLFKHSRS 184
           I+VIR+YGLAGRPKMA+K F+RIQTFGVRRSVRSLNTLLNALVQN RFSLVHLLFK+S+S
Sbjct: 125 ITVIRSYGLAGRPKMALKTFLRIQTFGVRRSVRSLNTLLNALVQNNRFSLVHLLFKYSKS 184

Query: 185 KFGVVPNVFTCNILIKALCEKNDVEGARKVSDEMP 220
           KFGVVPNVFTCNILIKALC+KNDVEGARKV DEMP
Sbjct: 185 KFGVVPNVFTCNILIKALCKKNDVEGARKVFDEMP 219

[Close]
BLAST of Carg09674 vs. TAIR10
Match: AT5G16420.1 (Pentatricopeptide repeat (PPR-like) superfamily protein)

HSP 1 Score: 271.9 bits (694), Expect = 8.2e-73
Identity = 130/210 (61.90%), Postives = 170/210 (80.95%), Query Frame = 0 

Query: 12  PTSLHGSISNLPLRFIFAVDSSVQSY-TVTPPIKPWPQRLYPKRLVAMIIRQQNLDLALQ 71
           PT     +++  L    A  +S+Q Y T  PPIKPWPQRL+PKRLV+MI +QQN+DLALQ
Sbjct: 8   PTRFPPFVASRRLFSASASAASLQQYCTEKPPIKPWPQRLFPKRLVSMITQQQNIDLALQ 67

Query: 72  IFHYAGKYHPGYSHNYDTYHAIIHRLSRARAFEPVESLLGELKNS--GINCGEDLFISVI 131
           IF YAGK HPG++HNYDTYH+I+ +LSRARAF+PVESL+ +L+NS   I CGE+LFI ++
Sbjct: 68  IFLYAGKSHPGFTHNYDTYHSILFKLSRARAFDPVESLMADLRNSYPPIKCGENLFIDLL 127

Query: 132 RNYGLAGRPKMAVKMFIRIQTFGVRRSVRSLNTLLNALVQNKRFSLVHLLFKHSRSKFGV 191
           RNYGLAGR + ++++F+RI  FGV+RSVRSLNTLLN L+QN+RF LVH +FK+S+  FG+
Sbjct: 128 RNYGLAGRYESSMRIFLRIPDFGVKRSVRSLNTLLNVLIQNQRFDLVHAMFKNSKESFGI 187

Query: 192 VPNVFTCNILIKALCEKNDVEGARKVSDEM 219
            PN+FTCN+L+KALC+KND+E A KV DE+
Sbjct: 188 TPNIFTCNLLVKALCKKNDIESAYKVLDEI 217

[Close]
BLAST of Carg09674 vs. TAIR10
Match: AT3G09060.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 86.7 bits (213), Expect = 4.9e-17
Identity = 48/137 (35.04%), Postives = 79/137 (57.66%), Query Frame = 0 

Query: 46  WPQRLYPKRLVAMIIRQQNLDLALQIFHYAGKYHPGYSHNYDTYHAIIHRLSRARAFEPV 105
           +P+ L PK ++ ++  ++N   A  +F  A + HPGY+H+   YH I+ RLS  R    V
Sbjct: 4   FPKSLSPKHVLKLLKSEKNPRAAFALFDSATR-HPGYAHSAVVYHHILRRLSETRMVNHV 63

Query: 106 ESLLGELKNSGINCGEDLFISVIRNYGLAGRPKMAVKMFIRI-QTFGVRRSVRSLNTLLN 165
             ++  +++    C ED+ +SVI+ YG    P  A+ +F R+ + FG   ++RS NTLLN
Sbjct: 64  SRIVELIRSQECKCDEDVALSVIKTYGKNSMPDQALDVFKRMREIFGCEPAIRSYNTLLN 123

Query: 166 ALVQNKRFSLVHLLFKH 182
           A V+ K++  V  LF +
Sbjct: 124 AFVEAKQWVKVESLFAY 139

[Close]
BLAST of Carg09674 vs. TAIR10
Match: AT5G46100.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 85.9 bits (211), Expect = 8.3e-17
Identity = 50/177 (28.25%), Postives = 99/177 (55.93%), Query Frame = 0 

Query: 46  WPQRLYPKRLVAMIIRQQNLDLALQIFHYA-GKYHPGYSHNYDTYHAIIHRLSRARAFEP 105
           W + + P +++ ++  +++++ ++ +F  A  +Y  GY H+  ++  ++ RL  A  F+ 
Sbjct: 10  WSKNITPSQVIKLMRAEKDVEKSMAVFDSATAEYANGYVHDQSSFGYMVLRLVSANKFKA 69

Query: 106 VESLLGELKNSGINCGEDLFISVIRNYGLAGRPKMAVKMFIRIQTFGVRRSVRSLNTLLN 165
            E L+  +K       ED+ +S+ R YG   RP  ++++F +++ F    S ++  T+L 
Sbjct: 70  AEDLIVRMKIENCVVSEDILLSICRGYGRVHRPFDSLRVFHKMKDFDCDPSQKAYVTVLA 129

Query: 166 ALVQNKRFSLVHLLFKHSRSKFGVVPNVFTCNILIKALCEKND--VEGARKVSDEMP 220
            LV+  + +L    +K+ R + G+ P V + N+LIKALC +ND  V+   K+  EMP
Sbjct: 130 ILVEENQLNLAFKFYKNMR-EIGLPPTVASLNVLIKALC-RNDGTVDAGLKIFLEMP 184

[Close]
BLAST of Carg09674 vs. TAIR10
Match: AT1G05600.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 80.9 bits (198), Expect = 2.7e-15
Identity = 48/173 (27.75%), Postives = 83/173 (47.98%), Query Frame = 0 

Query: 46  WPQRLYPKRLVAMIIRQQNLDLALQIFHYAGKYHPGYSHNYDTYHAIIHRLSRARAFEPV 105
           WP+ L P  L  ++ +Q+N   AL++F  A +  P Y HN   Y  +I  L ++     +
Sbjct: 6   WPRVLTPSLLSQILKKQKNPVTALKLFEEAKERFPSYGHNGSVYATMIDILGKSNRVLEM 65

Query: 106 ESLLGELKNSGINCGEDLFISVIRNYGLAGRPKMAVKMFIRIQTFGVRRSVRSLNTLLNA 165
           + ++  +K     C + +F SVIR +  AGR + A+ +F  +  F       S +TLL  
Sbjct: 66  KYVIERMKEDSCECKDSVFASVIRTFSRAGRLEDAISLFKSLHEFNCVNWSLSFDTLLQE 125

Query: 166 LVQNKRFSLVHLLFKHSRSKFGVVPNVFTCNILIKALCEKNDVEGARKVSDEM 219
           +V+         +F+     + V   +   N+L+K LC+ N  + A +V  EM
Sbjct: 126 MVKESELEAACHIFRKYCYGWEVNSRITALNLLMKVLCQVNRSDLASQVFQEM 178

[Close]
BLAST of Carg09674 vs. TAIR10
Match: AT1G07740.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 78.6 bits (192), Expect = 1.3e-14
Identity = 41/126 (32.54%), Postives = 77/126 (61.11%), Query Frame = 0 

Query: 44  KPWPQRLYPKRLVAMIIRQQNLDLALQIFHYAGKYHPGYSHNYDTYHAIIHRLSRARAFE 103
           KPW +  +   L  +    ++ + AL +FH   +   G+ H+Y +Y ++I++L+++R F+
Sbjct: 45  KPWEEVPFLTDLKEI----EDPEEALSLFHQYQEM--GFRHDYPSYSSLIYKLAKSRNFD 104

Query: 104 PVESLLGELKNSGINCGEDLFISVIRNYGLAGRPKMAVKMFIRIQTFGVRRSVRSLNTLL 163
            V+ +L  ++   + C E LF+ +I++YG AG    A+ +F +I +F   R+++SLNTL+
Sbjct: 105 AVDQILRLVRYRNVRCRESLFMGLIQHYGKAGSVDKAIDVFHKITSFDCVRTIQSLNTLI 164

Query: 164 NALVQN 170
           N LV N
Sbjct: 165 NVLVDN 164

[Close]
BLAST of Carg09674 vs. Swiss-Prot
Match: sp|Q9FFE3|PP388_ARATH (Pentatricopeptide repeat-containing protein At5g16420, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g16420 PE=2 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 1.5e-71
Identity = 130/210 (61.90%), Postives = 170/210 (80.95%), Query Frame = 0 

Query: 12  PTSLHGSISNLPLRFIFAVDSSVQSY-TVTPPIKPWPQRLYPKRLVAMIIRQQNLDLALQ 71
           PT     +++  L    A  +S+Q Y T  PPIKPWPQRL+PKRLV+MI +QQN+DLALQ
Sbjct: 8   PTRFPPFVASRRLFSASASAASLQQYCTEKPPIKPWPQRLFPKRLVSMITQQQNIDLALQ 67

Query: 72  IFHYAGKYHPGYSHNYDTYHAIIHRLSRARAFEPVESLLGELKNS--GINCGEDLFISVI 131
           IF YAGK HPG++HNYDTYH+I+ +LSRARAF+PVESL+ +L+NS   I CGE+LFI ++
Sbjct: 68  IFLYAGKSHPGFTHNYDTYHSILFKLSRARAFDPVESLMADLRNSYPPIKCGENLFIDLL 127

Query: 132 RNYGLAGRPKMAVKMFIRIQTFGVRRSVRSLNTLLNALVQNKRFSLVHLLFKHSRSKFGV 191
           RNYGLAGR + ++++F+RI  FGV+RSVRSLNTLLN L+QN+RF LVH +FK+S+  FG+
Sbjct: 128 RNYGLAGRYESSMRIFLRIPDFGVKRSVRSLNTLLNVLIQNQRFDLVHAMFKNSKESFGI 187

Query: 192 VPNVFTCNILIKALCEKNDVEGARKVSDEM 219
            PN+FTCN+L+KALC+KND+E A KV DE+
Sbjct: 188 TPNIFTCNLLVKALCKKNDIESAYKVLDEI 217

[Close]
BLAST of Carg09674 vs. Swiss-Prot
Match: sp|Q9SS81|PP221_ARATH (Pentatricopeptide repeat-containing protein At3g09060 OS=Arabidopsis thaliana OX=3702 GN=At3g09060 PE=2 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 8.8e-16
Identity = 48/137 (35.04%), Postives = 79/137 (57.66%), Query Frame = 0 

Query: 46  WPQRLYPKRLVAMIIRQQNLDLALQIFHYAGKYHPGYSHNYDTYHAIIHRLSRARAFEPV 105
           +P+ L PK ++ ++  ++N   A  +F  A + HPGY+H+   YH I+ RLS  R    V
Sbjct: 4   FPKSLSPKHVLKLLKSEKNPRAAFALFDSATR-HPGYAHSAVVYHHILRRLSETRMVNHV 63

Query: 106 ESLLGELKNSGINCGEDLFISVIRNYGLAGRPKMAVKMFIRI-QTFGVRRSVRSLNTLLN 165
             ++  +++    C ED+ +SVI+ YG    P  A+ +F R+ + FG   ++RS NTLLN
Sbjct: 64  SRIVELIRSQECKCDEDVALSVIKTYGKNSMPDQALDVFKRMREIFGCEPAIRSYNTLLN 123

Query: 166 ALVQNKRFSLVHLLFKH 182
           A V+ K++  V  LF +
Sbjct: 124 AFVEAKQWVKVESLFAY 139

[Close]
BLAST of Carg09674 vs. Swiss-Prot
Match: sp|Q9FNL2|PP418_ARATH (Pentatricopeptide repeat-containing protein At5g46100 OS=Arabidopsis thaliana OX=3702 GN=At5g46100 PE=2 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 1.5e-15
Identity = 50/177 (28.25%), Postives = 99/177 (55.93%), Query Frame = 0 

Query: 46  WPQRLYPKRLVAMIIRQQNLDLALQIFHYA-GKYHPGYSHNYDTYHAIIHRLSRARAFEP 105
           W + + P +++ ++  +++++ ++ +F  A  +Y  GY H+  ++  ++ RL  A  F+ 
Sbjct: 10  WSKNITPSQVIKLMRAEKDVEKSMAVFDSATAEYANGYVHDQSSFGYMVLRLVSANKFKA 69

Query: 106 VESLLGELKNSGINCGEDLFISVIRNYGLAGRPKMAVKMFIRIQTFGVRRSVRSLNTLLN 165
            E L+  +K       ED+ +S+ R YG   RP  ++++F +++ F    S ++  T+L 
Sbjct: 70  AEDLIVRMKIENCVVSEDILLSICRGYGRVHRPFDSLRVFHKMKDFDCDPSQKAYVTVLA 129

Query: 166 ALVQNKRFSLVHLLFKHSRSKFGVVPNVFTCNILIKALCEKND--VEGARKVSDEMP 220
            LV+  + +L    +K+ R + G+ P V + N+LIKALC +ND  V+   K+  EMP
Sbjct: 130 ILVEENQLNLAFKFYKNMR-EIGLPPTVASLNVLIKALC-RNDGTVDAGLKIFLEMP 184

[Close]
BLAST of Carg09674 vs. Swiss-Prot
Match: sp|Q9SYK1|PPR11_ARATH (Pentatricopeptide repeat-containing protein At1g05600 OS=Arabidopsis thaliana OX=3702 GN=At1g05600 PE=2 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 4.8e-14
Identity = 48/173 (27.75%), Postives = 83/173 (47.98%), Query Frame = 0 

Query: 46  WPQRLYPKRLVAMIIRQQNLDLALQIFHYAGKYHPGYSHNYDTYHAIIHRLSRARAFEPV 105
           WP+ L P  L  ++ +Q+N   AL++F  A +  P Y HN   Y  +I  L ++     +
Sbjct: 6   WPRVLTPSLLSQILKKQKNPVTALKLFEEAKERFPSYGHNGSVYATMIDILGKSNRVLEM 65

Query: 106 ESLLGELKNSGINCGEDLFISVIRNYGLAGRPKMAVKMFIRIQTFGVRRSVRSLNTLLNA 165
           + ++  +K     C + +F SVIR +  AGR + A+ +F  +  F       S +TLL  
Sbjct: 66  KYVIERMKEDSCECKDSVFASVIRTFSRAGRLEDAISLFKSLHEFNCVNWSLSFDTLLQE 125

Query: 166 LVQNKRFSLVHLLFKHSRSKFGVVPNVFTCNILIKALCEKNDVEGARKVSDEM 219
           +V+         +F+     + V   +   N+L+K LC+ N  + A +V  EM
Sbjct: 126 MVKESELEAACHIFRKYCYGWEVNSRITALNLLMKVLCQVNRSDLASQVFQEM 178

[Close]
BLAST of Carg09674 vs. Swiss-Prot
Match: sp|Q9LQQ1|PPR20_ARATH (Pentatricopeptide repeat-containing protein At1g07740, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g07740 PE=2 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 2.4e-13
Identity = 41/126 (32.54%), Postives = 77/126 (61.11%), Query Frame = 0 

Query: 44  KPWPQRLYPKRLVAMIIRQQNLDLALQIFHYAGKYHPGYSHNYDTYHAIIHRLSRARAFE 103
           KPW +  +   L  +    ++ + AL +FH   +   G+ H+Y +Y ++I++L+++R F+
Sbjct: 45  KPWEEVPFLTDLKEI----EDPEEALSLFHQYQEM--GFRHDYPSYSSLIYKLAKSRNFD 104

Query: 104 PVESLLGELKNSGINCGEDLFISVIRNYGLAGRPKMAVKMFIRIQTFGVRRSVRSLNTLL 163
            V+ +L  ++   + C E LF+ +I++YG AG    A+ +F +I +F   R+++SLNTL+
Sbjct: 105 AVDQILRLVRYRNVRCRESLFMGLIQHYGKAGSVDKAIDVFHKITSFDCVRTIQSLNTLI 164

Query: 164 NALVQN 170
           N LV N
Sbjct: 165 NVLVDN 164

[Close]
BLAST of Carg09674 vs. TrEMBL
Match: tr|A0A1S3BPE8|A0A1S3BPE8_CUCME (pentatricopeptide repeat-containing protein At5g16420, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103491773 PE=4 SV=1)

HSP 1 Score: 370.2 bits (949), Expect = 8.0e-99
Identity = 181/215 (84.19%), Postives = 200/215 (93.02%), Query Frame = 0 

Query: 5   FRCNKFFPTSLHGSISNLPLRFIFAVDSSVQSYTVTPPIKPWPQRLYPKRLVAMIIRQQN 64
           FR N+F   SLH  IS +PLRFIFA+++ +QSYTVTPPIKPWPQRL+PKRLVAMI RQQN
Sbjct: 5   FRSNRFKHISLHTPISIVPLRFIFAIETPLQSYTVTPPIKPWPQRLFPKRLVAMIRRQQN 64

Query: 65  LDLALQIFHYAGKYHPGYSHNYDTYHAIIHRLSRARAFEPVESLLGELKNSGINCGEDLF 124
           LDLALQIFHYAGK+HP +SHNYDTYHAIIHRLSRARAFEPVESLL EL+++GINC EDLF
Sbjct: 65  LDLALQIFHYAGKFHPAFSHNYDTYHAIIHRLSRARAFEPVESLLLELQDAGINCSEDLF 124

Query: 125 ISVIRNYGLAGRPKMAVKMFIRIQTFGVRRSVRSLNTLLNALVQNKRFSLVHLLFKHSRS 184
           I+VIR+YGLAGRPKMA+K F+RIQTFGVRRSVRSLNTLLNALVQN RFSLVHLLFK+S+S
Sbjct: 125 ITVIRSYGLAGRPKMALKTFLRIQTFGVRRSVRSLNTLLNALVQNNRFSLVHLLFKYSKS 184

Query: 185 KFGVVPNVFTCNILIKALCEKNDVEGARKVSDEMP 220
           KFGVVPNVFTCNILIKALC+KNDVEGARKV DEMP
Sbjct: 185 KFGVVPNVFTCNILIKALCKKNDVEGARKVFDEMP 219

[Close]
BLAST of Carg09674 vs. TrEMBL
Match: tr|A0A0A0LDM6|A0A0A0LDM6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G589540 PE=4 SV=1)

HSP 1 Score: 363.2 bits (931), Expect = 9.8e-97
Identity = 179/215 (83.26%), Postives = 197/215 (91.63%), Query Frame = 0 

Query: 5   FRCNKFFPTSLHGSISNLPLRFIFAVDSSVQSYTVTPPIKPWPQRLYPKRLVAMIIRQQN 64
           FR N+F   SLH  IS +PLRFIFAV++ +QSYTVTPPIKPWPQRL+P RLVAMI RQQN
Sbjct: 5   FRSNRFKNISLHTPISIVPLRFIFAVETPLQSYTVTPPIKPWPQRLFPNRLVAMIRRQQN 64

Query: 65  LDLALQIFHYAGKYHPGYSHNYDTYHAIIHRLSRARAFEPVESLLGELKNSGINCGEDLF 124
           LDLALQIFHYAGKYHP ++HNYDTYHAII+RLSRARAFEPVESLL EL++SGINC EDLF
Sbjct: 65  LDLALQIFHYAGKYHPAFTHNYDTYHAIIYRLSRARAFEPVESLLLELQDSGINCSEDLF 124

Query: 125 ISVIRNYGLAGRPKMAVKMFIRIQTFGVRRSVRSLNTLLNALVQNKRFSLVHLLFKHSRS 184
           I+VIR+YGLA RPKMA+K F+RIQTFGVRRSVRSLNTLLNALVQN RFS VHLLFK+S+S
Sbjct: 125 ITVIRSYGLASRPKMALKTFLRIQTFGVRRSVRSLNTLLNALVQNNRFSSVHLLFKYSKS 184

Query: 185 KFGVVPNVFTCNILIKALCEKNDVEGARKVSDEMP 220
           KFGVVPNVFTCNILIKALC+KNDVEGARKV DEMP
Sbjct: 185 KFGVVPNVFTCNILIKALCKKNDVEGARKVFDEMP 219

[Close]
BLAST of Carg09674 vs. TrEMBL
Match: tr|A0A2I4E5Y7|A0A2I4E5Y7_9ROSI (pentatricopeptide repeat-containing protein At5g16420, mitochondrial OS=Juglans regia OX=51240 GN=LOC108986597 PE=4 SV=1)

HSP 1 Score: 307.0 bits (785), Expect = 8.3e-80
Identity = 146/186 (78.49%), Postives = 171/186 (91.94%), Query Frame = 0 

Query: 34  VQSYTVTPPIKPWPQRLYPKRLVAMIIRQQNLDLALQIFHYAGKYHPGYSHNYDTYHAII 93
           +QSYTVTPPIKPWPQRLYPKRLVAM+ RQQNLDLALQIF++A K+HPG+S NYDTYHAII
Sbjct: 34  LQSYTVTPPIKPWPQRLYPKRLVAMVTRQQNLDLALQIFYHASKFHPGFSQNYDTYHAII 93

Query: 94  HRLSRARAFEPVESLLGELKNSGINCGEDLFISVIRNYGLAGRPKMAVKMFIRIQTFGVR 153
            RLSRAR F PVESLL EL++S I CGE+LFI VIR+YGLAGRP  A+K F+RI+TFGV+
Sbjct: 94  RRLSRAREFAPVESLLSELRHSQIKCGENLFIDVIRSYGLAGRPDSALKTFLRIETFGVQ 153

Query: 154 RSVRSLNTLLNALVQNKRFSLVHLLFKHSRSKFGVVPNVFTCNILIKALCEKNDVEGARK 213
           RSVRSLNTLLNALVQNKR++LVH+LFK+S+++FGVVPNVFTCNIL+KA+C+KNDVEGA +
Sbjct: 154 RSVRSLNTLLNALVQNKRYTLVHVLFKNSKARFGVVPNVFTCNILLKAMCKKNDVEGAVR 213

Query: 214 VSDEMP 220
           V DEMP
Sbjct: 214 VLDEMP 219

[Close]
BLAST of Carg09674 vs. TrEMBL
Match: tr|A0A2P4K649|A0A2P4K649_QUESU (Pentatricopeptide repeat-containing protein, mitochondrial OS=Quercus suber OX=58331 GN=CFP56_53769 PE=4 SV=1)

HSP 1 Score: 305.4 bits (781), Expect = 2.4e-79
Identity = 148/198 (74.75%), Postives = 173/198 (87.37%), Query Frame = 0 

Query: 24  LRFIFAVDSS--VQSYTVTPPIKPWPQRLYPKRLVAMIIRQQNLDLALQIFHYAGKYHPG 83
           LR    VD +  +QSYTVTPP+KPWPQRLYPKRLV+MI RQQNLDLALQIFHYAGK+HP 
Sbjct: 16  LRRFSTVDPNLLLQSYTVTPPLKPWPQRLYPKRLVSMITRQQNLDLALQIFHYAGKFHPD 75

Query: 84  YSHNYDTYHAIIHRLSRARAFEPVESLLGELKNSGINCGEDLFISVIRNYGLAGRPKMAV 143
           +SHNYDTYHAII RL RAR F PVESLL +L++S I CGE+LF+ VIR+YGLA +P +AV
Sbjct: 76  FSHNYDTYHAIIQRLCRAREFNPVESLLSDLRHSHIKCGENLFVDVIRSYGLASKPDLAV 135

Query: 144 KMFIRIQTFGVRRSVRSLNTLLNALVQNKRFSLVHLLFKHSRSKFGVVPNVFTCNILIKA 203
           K F+RI TF V+RSVRSLNTLLNALVQNKR+ LVH+LFK+S+++FGVVPNVFTCNILIKA
Sbjct: 136 KTFLRIHTFDVQRSVRSLNTLLNALVQNKRYGLVHVLFKNSQTRFGVVPNVFTCNILIKA 195

Query: 204 LCEKNDVEGARKVSDEMP 220
           +C+KNDVEGA +V DEMP
Sbjct: 196 MCKKNDVEGALQVLDEMP 213

[Close]
BLAST of Carg09674 vs. TrEMBL
Match: tr|A0A061E045|A0A061E045_THECC (Pentatricopeptide repeat (PPR-like) superfamily protein OS=Theobroma cacao OX=3641 GN=TCM_005091 PE=4 SV=1)

HSP 1 Score: 305.4 bits (781), Expect = 2.4e-79
Identity = 148/208 (71.15%), Postives = 175/208 (84.13%), Query Frame = 0 

Query: 12  PTSLHGSISNLPLRFIFAVDSSVQSYTVTPPIKPWPQRLYPKRLVAMIIRQQNLDLALQI 71
           P +   S S + L  +      +Q YTVTPPIKPWPQRLYPKRLV+MI  QQNLDLALQI
Sbjct: 18  PVATFRSFSTVDLSNVDPSSPLLQYYTVTPPIKPWPQRLYPKRLVSMITCQQNLDLALQI 77

Query: 72  FHYAGKYHPGYSHNYDTYHAIIHRLSRARAFEPVESLLGELKNSGINCGEDLFISVIRNY 131
           F YAGK+HP + HNYDTYH+IIH+L RARAFEP+ESLL +L++S I CGE+LFISVIRNY
Sbjct: 78  FLYAGKFHPNFYHNYDTYHSIIHKLCRARAFEPMESLLSQLQDSQIKCGENLFISVIRNY 137

Query: 132 GLAGRPKMAVKMFIRIQTFGVRRSVRSLNTLLNALVQNKRFSLVHLLFKHSRSKFGVVPN 191
           GLA RPK+A+K F+RI+ F V+RSVRSLNTLLNALVQNKR+ LVH++FK+S++KFGVVPN
Sbjct: 138 GLASRPKLALKTFLRIENFNVQRSVRSLNTLLNALVQNKRYDLVHIMFKNSKTKFGVVPN 197

Query: 192 VFTCNILIKALCEKNDVEGARKVSDEMP 220
           VFTCNILIKALC++NDVE A KV DEMP
Sbjct: 198 VFTCNILIKALCQENDVEAAYKVFDEMP 225

The following BLAST results are available for this feature:
BLAST of Carg09674 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022934977.16.0e-12298.69pentatricopeptide repeat-containing protein At5g16420, mitochondrial [Cucurbita ... [more]
XP_023528110.14.0e-11896.80pentatricopeptide repeat-containing protein At5g16420, mitochondrial [Cucurbita ... [more]
XP_022982687.12.1e-11494.06pentatricopeptide repeat-containing protein At5g16420, mitochondrial [Cucurbita ... [more]
XP_022154201.14.9e-10083.56pentatricopeptide repeat-containing protein At5g16420, mitochondrial [Momordica ... [more]
XP_008450076.11.2e-9884.19PREDICTED: pentatricopeptide repeat-containing protein At5g16420, mitochondrial ... [more]
BLAST of Carg09674 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G16420.18.2e-7361.90Pentatricopeptide repeat (PPR-like) superfamily protein[more]
AT3G09060.14.9e-1735.04Pentatricopeptide repeat (PPR) superfamily protein[more]
AT5G46100.18.3e-1728.25Pentatricopeptide repeat (PPR) superfamily protein[more]
AT1G05600.12.7e-1527.75Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT1G07740.11.3e-1432.54Tetratricopeptide repeat (TPR)-like superfamily protein[more]
BLAST of Carg09674 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9FFE3|PP388_ARATH1.5e-7161.90Pentatricopeptide repeat-containing protein At5g16420, mitochondrial OS=Arabidop... [more]
sp|Q9SS81|PP221_ARATH8.8e-1635.04Pentatricopeptide repeat-containing protein At3g09060 OS=Arabidopsis thaliana OX... [more]
sp|Q9FNL2|PP418_ARATH1.5e-1528.25Pentatricopeptide repeat-containing protein At5g46100 OS=Arabidopsis thaliana OX... [more]
sp|Q9SYK1|PPR11_ARATH4.8e-1427.75Pentatricopeptide repeat-containing protein At1g05600 OS=Arabidopsis thaliana OX... [more]
sp|Q9LQQ1|PPR20_ARATH2.4e-1332.54Pentatricopeptide repeat-containing protein At1g07740, mitochondrial OS=Arabidop... [more]
BLAST of Carg09674 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BPE8|A0A1S3BPE8_CUCME8.0e-9984.19pentatricopeptide repeat-containing protein At5g16420, mitochondrial OS=Cucumis ... [more]
tr|A0A0A0LDM6|A0A0A0LDM6_CUCSA9.8e-9783.26Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G589540 PE=4 SV=1[more]
tr|A0A2I4E5Y7|A0A2I4E5Y7_9ROSI8.3e-8078.49pentatricopeptide repeat-containing protein At5g16420, mitochondrial OS=Juglans ... [more]
tr|A0A2P4K649|A0A2P4K649_QUESU2.4e-7974.75Pentatricopeptide repeat-containing protein, mitochondrial OS=Quercus suber OX=5... [more]
tr|A0A061E045|A0A061E045_THECC2.4e-7971.15Pentatricopeptide repeat (PPR-like) superfamily protein OS=Theobroma cacao OX=36... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg09674-RACarg09674-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 126..152
e-value: 0.14
score: 12.3
coord: 371..395
e-value: 0.0012
score: 18.8
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 190..237
e-value: 6.7E-14
score: 51.7
coord: 260..309
e-value: 1.6E-16
score: 60.1
coord: 399..448
e-value: 9.2E-17
score: 60.9
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 335..366
e-value: 2.7E-4
score: 18.9
coord: 264..296
e-value: 3.6E-11
score: 40.5
coord: 193..227
e-value: 6.7E-8
score: 30.2
coord: 437..471
e-value: 1.1E-8
score: 32.7
coord: 228..262
e-value: 1.4E-5
score: 22.9
coord: 158..192
e-value: 0.0027
score: 15.8
coord: 403..436
e-value: 4.9E-8
score: 30.7
coord: 298..331
e-value: 3.8E-7
score: 27.9
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 470..504
score: 6.818
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 261..295
score: 13.943
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 296..330
score: 11.455
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 331..365
score: 8.583
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 226..260
score: 10.512
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 155..190
score: 7.399
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 191..225
score: 11.597
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 120..154
score: 6.96
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 435..469
score: 12.902
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 85..119
score: 7.991
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 366..396
score: 7.465
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 400..434
score: 12.627
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 256..340
e-value: 1.6E-23
score: 85.0
coord: 48..173
e-value: 8.5E-17
score: 63.0
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 341..529
e-value: 2.1E-36
score: 128.0
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 174..255
e-value: 8.8E-18
score: 66.4
NoneNo IPR availablePANTHERPTHR24015:SF322SUBFAMILY NOT NAMEDcoord: 31..511
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 31..511

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg09674Cla004050Watermelon (97103) v1carwmB0433
Carg09674Csa3G589540Cucumber (Chinese Long) v2carcuB0466
Carg09674ClCG05G013300Watermelon (Charleston Gray)carwcgB0428
Carg09674CSPI03G25700Wild cucumber (PI 183967)carcpiB0471
Carg09674Cucsa.156420Cucumber (Gy14) v1carcgyB0503
Carg09674CmaCh14G007040Cucurbita maxima (Rimu)carcmaB0607
Carg09674CmoCh14G007230Cucurbita moschata (Rifu)carcmoB0592
Carg09674Lsi07G014620Bottle gourd (USVL1VR-Ls)carlsiB399
Carg09674Cp4.1LG03g07130Cucurbita pepo (Zucchini)carcpeB0613
Carg09674CsGy3G024120Cucumber (Gy14) v2carcgybB0443
Carg09674MELO3C014863.2Melon (DHL92) v3.6.1carmedB0446
Carg09674CsaV3_3G027230Cucumber (Chinese Long) v3carcucB0467
Carg09674Cla97C05G094860Watermelon (97103) v2carwmbB0459
Carg09674Bhi01G001590Wax gourdcarwgoB0526
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg09674Watermelon (97103) v2carwmbB0460
Carg09674Silver-seed gourdcarcarB388
Carg09674Silver-seed gourdcarcarB397
Carg09674Silver-seed gourdcarcarB446
Carg09674Cucumber (Gy14) v2carcgybB0442
Carg09674Cucurbita maxima (Rimu)carcmaB0603
Carg09674Cucurbita maxima (Rimu)carcmaB0604
Carg09674Cucurbita maxima (Rimu)carcmaB0605
Carg09674Cucurbita moschata (Rifu)carcmoB0588
Carg09674Cucurbita moschata (Rifu)carcmoB0589
Carg09674Cucurbita moschata (Rifu)carcmoB0590
Carg09674Cucurbita pepo (Zucchini)carcpeB0610
Carg09674Cucurbita pepo (Zucchini)carcpeB0614
Carg09674Cucumber (Chinese Long) v3carcucB0466
Carg09674Bottle gourd (USVL1VR-Ls)carlsiB397
Carg09674Melon (DHL92) v3.5.1carmeB0442
Carg09674Melon (DHL92) v3.5.1carmeB0444
Carg09674Watermelon (Charleston Gray)carwcgB0430
Carg09674Watermelon (97103) v1carwmB0437