CsaV3_3G023410 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_3G023410
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Mediator of RNA polymerase II transcription subunit 6
Location	chr3 : 21117183 .. 21127802 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AATGAGTGAAAGTTGCAAATATGTAAACCATTTTTCAAATATTTATAAACAGTCTATCGGTCTATAGCACAATTGTTTGAAAAATAATGTTGTTATACAGTTTGATTGCTAAGACTGCTATTCATTGTGGTTGCAATACAAATTCATCTCCATACCGTGGAGGTTGATACGTTTTTGTTACATGACTTCTCCCTCTTCACTCTCGGTCGTGATCGTCGGGAAACAAAGAAAAAGGGTGTAGTGCTTTCACTTACGGCGGAGGGATCTGTAAAATTCAACACTTCGTGGCCAGAAAAGTAAAATAGCGCACAAATGGCAACTCCACCACCACCGACGGCTCCGCCAGGGACCGGGAATTTCGAGGGGGGGCCGCTGCCAGCAGCGCCTCAGCCTCCGGGCACGGACATGACTGGAATTTGCTTTAGAGACCAGCTTTGGCTCAATACTTACCCTCTTGATCGAAACTTGGTTTTCGATTACTTCGCCTTGTCGCCTTTCTACGACTGGACTTGTAACAACGAACAACTCAGAATGCGCTCCATTCACCCCCTCGATCTTTCTCAACTCTCGTACGATTTCTCATCTTCTTTTTTTTTTTTTTTTTTAAATTTCTATTGACAGGATTTCGTTTTCTCTATTAATTGATTTCTTCGTTTAATTGATTGTATGTATCTTACATATTTCCCCCCGTACTTGGATAATTCAACCTTGTTCTTTATATGTTCTTGTTTTATTAAGATTTCCGAAATTTGTGAATTGTAACCCTAGGATTCAGTTTCATTTAGGCATTACCATGATGGGTAATCTTCTGTTCAACAGAAAAATGACAGGCATAGAGTACATGCTGAATGAAGTTATGGAGCCTCACCTTTTCGTTTTCAGAAAGCAAAAAAGGGATGGTCCTGAGAAAGTCACACCGATGCTGACTTATTATATCTTGGATGGTTCAATCTACCAGGCGCCTCAACTTTGCAGTGTTTTTGCTGCTCGCGTTGTGAGATTGGCATACTTATCTTTCTTTGTCACTTTCATTTGTTTGATGCAATCTTAGTTTTTCTTCTTTTTTCCTCATAATTCTTGCATTTGGATAATTTCTTAGTTCCATTTAGTAAATTATCGTGTTGGGTAACATCTCTTCAACTGGAAATTTAATTGCTGGATTCCTTTTTTCTTCTTTGTTTTGAAATTAATGTAGAATTTGTTTAAAACTGCAAGGCTATTATGTATTCTGCTTCTCTCTTCCTCTGTTTTTTTGTAATCTTACATTGAGTCTTCATCATACTGCAGAGTCGGGCACTGTATTACATATCAAAGGCCTTTACCACTGCTTCCTCAAAGTTGGAGAAGATAGGATATGGTATCTTCTAGCTATTAGTGATATATTTTTTGCTCACACTATTTTAAGTTATAGTTAAAAGATACTCACCAATGACTTTACACCTCACGGTTCTGCTATCTTAACACACATTTTTTAAGTTTTATTTAAGTCGTGCTAATTTTCTTTGAAAGAATTCTTTGAGCTTTTCAAGATTAACAGTTGGTTTCTTATTTTGAGATCACTTAACCTCGGTTTGGTAACCATTTTGTTTTTTGTTTTTAACTTTTTATAATTAAACCTATTTCCTCCTCATGTCTTACAATTTTGCATCTTTCTTAAATACAATGGTTGAACGCTTAGCCAAATTCCAAAAATAAGAACAACTTTTTAAAAGCTACTTTTTAATTTTCAAATTTTGACTTGGTTTTTAAAACCATCAGTATAATGTAGATAACAAAGGAAGAAAGTTGGAGGTGGAAATAGTGTTTTAGGCTTAAGTTTTCAAAAACAAAAACCAAAAACAAAATGGTTACTCTGAGGACTCTTCCTAAGAAGAACAAGATCTCAATTTATTGAATTATATCTATGAAGAAATAAAAGATAATCCAAGAATAAAGGAACTTGTGAGCCTCCCTCTTGAGTATTTTCACCCAAGCCCTAGATCACTCCACAAATTAACCTCCCTTCATTCACTCATTCTCTTGCTATTTATGCAACATGCTGTAGAAATTTTCATCGAAAGACCATTATACTAACATGCTAATATTCTTATCTAGGTATCTAACAGTCACCAAATGGGCATTGGCCTTAGTGTTTAGTTTTCTCTTGTTTTATTTGATTAGGATTGTTTCAGTTTTCTGTGTAGATCTTACACTTTGTTAAAGGGTTTGTGGGTTTGTTGTTTTCTTTTTGAACTTTTGTATCTTGAGCATCAACCTCTTTACATCATTTCAGAGAATTAGAGACTCCTCAATACAAAAAACCAAGAAAGACCAAATTTTGATGCTTTCAGGCTTTAGATAGTTGATATTTATAGCACTCCAATAGGCTTTATGAATGTTCTTTTTTATTCAGACTTCATTCTGAAATCAAATTTTTGGGTCTTATATGGAATAGTTCATTCACATATGAAATGTAGAATGAACTTTAAAGATACAACACTGCCTAAATGCCTAACAAACTGTTTTCTCATTTCTGGTTCAGTTGATTCTGAAAATGAGAGTGAAGAAGTAAAACCTGCAAAAGAAACCATTAACTTTAAGGAAGTAAAGCGAGTTGATCATATTCTTGCATCTTTACAGCGCAAGGTAACTTTTTTCAACATCACAAATCATCTACTCTCTATTGACATAATCTGCATGAGCTTCATCTTTACTATAACAGAAAGTTATGTATAAATTGCGAAGTGCTAATTTATCTATTAAGAAGAAAGTGGTGAGAATTTGTATGCAGTTTTCCTATAAGTCATTATCACATTTCATTTAATAACAACAGAACTTTTTGAAGTTTCATCAGTTTATTTAAGTTTTGAACAATATTACCAAACCTAATCTAACTACTCACGAACCACTTACTCATTTTGAATGGAGAACTAATGACTTAGGCTTCAAATGTGTCCAGATTCAAATATATTGTACCTGTAAATAATTGAAATTAATTCAATTGAACTTGTAAAACAATTAAATTATCTAAATCGATAAACTGCTGGTATAGTATACAAATGACTTTATGTGTGTCCATATTAATGGTTTATATTTTTCATATTGAAGATTTGGCTGGTCTTTTTGCCTATCCTAATTAAGAGACAAATCTTCTTGTTAAAAATTACAGCTGCCACCTGCCCCACCACCCCCACCATTTCCTGAAGGTTATGCTCCTGCTGCCACAGCAGAGACAGAAAAAGGCCCTGAAAATCAGCAAGGAGAGTCACAACAGCCTTCTGCAGATCCCATTATTGATCAGGGTCCAGCTAAAAGGATGAAATTTTCAAGTGTTTAGGCTACCTTGCCTGTTGAGAAGCCTATTTAATCCTACAATTGAAATTCAACATGGATGACATCCCTGCACAAAGCATGGTGAGTTGTGAACACACACACACACACACACACACACACACACACACACACACACACCCCCAAAAAAAAAAAAAGAAGAAAAGAGGAAAAAGGTCAAAGAGTTGGAATCTGCCTTGTGAAAAGCCTGTAGTTATAGACTTAACTTGTGATAATCCATTGTTTTAGTAGTAACTTGTACTACACTACCATGTAACCATCACTTCCTGATTTTGTTAGCTAGAATTGTTTGATACTCATATGACATACCACTAGTTGCTGTGTCTTTGTATTGTGATAACTTGGGAAGAAGGTTTTTAATATTGAACATGGTAATATAATTCTGCAATATCTTGGGCTAGAGACTTAAAACATTGACATGATTGGAATCATAAGCTTTTATTTGTGTGTCATGTGTTTGGATCCTGTTAGGGAATGAATTATACATTCTTAGAATCATGCAATCTGACGTCTGGTACATAAAGTATTGCAAGTAGAGACTGTTGCTAAGTTTACAAACCTGATGGTCAAAATGGGCTTCGAATCCTAATGGAGGACTCATATACACTTCCTTTTCTAAATTCCCGTTTAGGAACGCGTTGTTAACATCAAGTTGATATAGAGGTTAGTCTTTATTCATTGTATCAGATAGCAAGACTCTAACAATGTTTAAATTTGCAATAAGAGAGGGTCTCAGAGTAGTCAACCCCATAAGTCTAAGTGAACCCTTTTGCAACTAACCTGGCCTTATGTCTATCAAGAGTATCATCTGCTTTGTACTTAATAGTAAACACCCATTTGCATTCCATAGTTTTATGTCCCTTAGAGAGAATGCAGAGCTCCAAGTCTTTTCTTTTCCAGGGCTGGAAGAAATCATGACTGTACTTTTCCACTCTGAGCATTTGAAGCCAACATGACTATTCTTGGGTATCGTAGTAGAGTCAAGACTGGTTGTAAGGCTCTGAACCGAGCAGATAAGTTCTTATAAGAAACATAGTTAGCAATAGAGTGTTTTGTGCAAGACCCGGTACCCTTCCTTAGTGTAATAGGTAGATCAAGAGACAGTTATACTTACTAATATTTTCTTAACGATTCTCCCTAGTTTCATTCTCAGTAACTTTTTGCAGTGACCTCATTCCCATCATCACTGCCCTTTCGATATGAACTTGCTTCCATTGTGTGTATAGGCGAGAGGCATTTTGATGTTTGGAATATAGTTTTTGGGTCGTGTCCCAAATATCCTTAGCACTTGCAGCGTACAGTAAGGATTTGTTGGTATGTGTTGGGTCGAAGAAGAGAGTCCTCTCCTTATAAAGGTGTATGAAGGCTATGATCGGGAGTGTTGGATGTCGCCCCTTAGATAGTCTTAATTGCCGCAATTTGCTGTCAAAGCTCTTCCAATTGCTGGTAAGCTATACCCGAGGAAGAAGCTTGCACGTTAAGGTTGGAATGTGCGGAAGATTCACCAACCTTAAATGTTGAGTGAATTTGAGGATTCCCAGCCCTGGGATAATAACTAGGGTTTGCAGCGAAATCAGTGGGTGGCAACACATACAGATTTGACTGCAGAAACAGTGGTGGCTGGACAGAATTAGATGGCAGAACATGGAGCACTATGTGGGGGACATTATAGGCTGCAAATGAAGATAAGGGTGGCAGAGAAGGATTGGCCGACATGATCTGAACCGGATGGGCTGGTTCGAAGGTTCTCAACGACGATGTGTGGAGCTTCGATGGTGGCACATGGAGTCGCGAACGATGGAAAGGGTGACGGAATCATGTTGGCCAGCGTTGTTTGAAGGTGGCGAAACCACTCATTCATGGCAATTCTGATTTGAGCATCAACGACGACACTAATACTGACGACTGTCTTCTTTGTTTGGTTTCCATCAAGAGTTGTGTTGTCTAGGGTTTGGTCAATATCGGGCTCTGATACCATATTGCAAGTAGAGACAAAGAACACCCACAAGTTTTACGTGGAAACCCTAGTCCAGGGAGAAACCATGTTGGAAATCTTTCTTATTGTTTTCTTTTCTTATATCACTGATGATACAAGGGAGCATTAATTTATATGCAATAGAAGCCTAATTAAAATAATAAAAGAGAATTAGGGCAACATAAAAAACTAAAAAACCTTTGAGCTTTCAACCTACAAGTCCACTAATACTAACATAAAGTATAATCTAAGATGATAAATTTCAAAAAGACTTTTAGGATATAATGGAAATTAGTTATAATGTTAAAACTCCTGCTATTTTGTTATTGGTGATTATTCTGTTATCCCCCACTTACGTGTACTTCCATTAGGTATTTATATTGTCCATTCTTAATAATAAAGATTGAGCAAGTTATTTAATCTCTATGTTAGTTTAATATGGTATCAGTTGATATTCATTGAGAAACTTCTGAGTTCATTTGTCGATGGCCAACGAAGAAGAAGAAATGCTTCTGTCCAATTCCGCCACCGACACTCATTGGATTCTTCATCTTCTCAATTTGGCAAATCCCTATTTCCTTCATCATTTTGATTGCACCAGCCTTGTCCTTGTATCAAATCCTCTCACTGAGACGAAATATACTTCTGGAGTCAAGCCATGATTATTGACCTCACGGTGAAGAACAAGTTGGGATTTGTTGATGGAACGATCACTCGGCCTTCTGGAGAACTGCTACATTTTGAAATTTGAACTTGATTTTGAAAGAAATATCGGCCAGTGTCAATTTCTTCGATTTTGCCAGAGAGATTTGGCTTGATCTACAAGAATGCTACAAGTACAAGAATTGTCTACAAGTTTATCAGATTCGCTGAGAATTAACCACTCTTGTTCAAGATTGATCTCTGTCACAATTTATTATGCCAAACTCAAAACTCTATGGAATGAATTGGAATTATATCACTTGGCTTGTTCCTATGGAAAGTTCACCTGTGGTGGAGTAGAAGATCTCGTGTAATACTTCCAAACAAAGTATGTCATGACGTTTCTTATGGGTTTGAACGAGTCTTTCAACCCAATTCGAACTCAGTTGTTGCTCCTGAAGCTAGAACCGATGATTACTAGGACTTTCTCTTCTACTGTGGTTCAAATGTTCGCTCAAATTCCAATCATGAAAAGAAGAAAGAATGTTTGATATGCACTCGTTGCAACATTCCTGGCCACACTGCTGAAAGATGCTATAAGGTTCATGAATATCCTCTGGATATCGAACCACCAGCAAGAACTCACCAAAATCCGGAAATTCTTCACCTACATCATCTTCTTCAGCTACTTCATCTGCTTCATTTCTTGGAAATCCAACTCATACACAATGCCAGGGACTGTTAGAAATGCTTCAGTCACATCTAGCAAAGGCCAAGACCAAGACCAAGACCAATAATGACTCTGCCTCTACTCCTCATGTAGTAGGTATGTGCTCACCTTACACTAATACTAAAGCCACTAAACTTTGGATCTTGGATTCTGGAGCATCATCAAACATCTGTTGTTGCAAGGAACTATTCACATCATTACATTCCATATCAATTGTCATAATCTCTTTGCTTGATCATAGACAAGTCGGTGTGAGTTTTTCTGGTGATAAATCATGGTTTAATACTTCAGAATGTGCTCTTTATACCTGATTTTTGGTTCAACCTTCTTTCAATCAGTGCCTTAACTGCAAATGTGCCAATTACAGTCCAATTTTATGTTGACAATTGTGTAATACTGGACAAGTTTCGTTGAAGATGATTAGCAAAGCTAGATTTTGGTATGACTTATATGTCCTTCAAGTTGAGAAGCCCTTGCTCTAGATTTGTCTACTCCCTCCATCTTGAATACTGCTGTTAATTTTCATGCTCAAAATACTGTTACTACCACTCGTTATCTTGAAGCAGTGGTTACAAGTACTTGTTATCTTTGAAAGATGAATTGCATATTACTCTTTCTAATAAAAAACACATCTGTCCTACTTGTCTTTTGGCTGAATAAAGGAAGTTGTCCTTTTGTTCAAACAATCATTTAGCAAATAAAGCTTTTGATTTAGTACACTGACATCTGGGGCCCTTACAAATCTTCTACATGTTCAGGTCATTGTTTCTTTATAACTATTGATTTCACAAGATATACTTGGGTCTACTTAATTCGACACAAGTGTGATGCCTTACATATCATTCCAACGTTCTTTGCTCTCGTTTAAAATTAATATGGAGTTTGCATAAAAGCCTTTTGATCAGACAATGCCCCAGAATTTTATTTCACTGATCTTTTTGCAATCATTCATCAATTCTCATGTGTTGGCTGTTCAGAACAAAACTTAGATGTCGAGAGAAAACATTAGCACCTACTTTATGTTGCTCGAGCTCTTTATTTTCAGTCTAAAATTCTCATTCAGTTATGGGGAGGGTGTGTCTTGACAACCACTTTCTAATCAACCAAACACCTTTCTCCATTCTCAATTGTTCGACTCCTTATTATCATTTTGGATGTTTTTCATGTTGAATGCTCATCTATGCACATCTTTGGATGTCTTTGCTTTGCATCATTGCTCACTGCACATAGATCCAAATTTTATCCCCGTACCATTACCTCAGTCTATATGGGACATCCTCCAAGAATGAAAGGGTACAAGCTATATGATGTTGAAAAGAAGTTTTTTTTTATCTCCAGAGATGACTGTTTCATGAACATGTCTTTCCTTGTCAACACATTTCTTCACAAGATAATCTTGTTGATCCATTTCCAGAAGTTGTTACCCCTGCCATTTTCGAGTTTGCAGGGATTCCTTTTAATGAAGCTGGGACTAGTACATTAGCCAAAGAAGTAGTTGCCACTCCAACTAACAACAATGTTGACTGTGAACAAAATAACAGTGCTCCAGTTGAGAATCAAGCAACGCTTGAGAGTCAAGCATCCATTGTGATTCCAAACAATGTGCCAACCACTTCTCAAAATGTTAGACGGTCTACTCGCTTACCAAACCACCTTCTTATCTTCATGAGTATCATCGTTACTTTGCTTCAAGAGTCCTCTATGAGCAACGTGCTCACTATGCCTACAAAGCTCCCCATTCAGAAGTTCATGTCTTATAACAAGTTGTCCTCGAGTTATAAGAAATTCTTACTCACTTCTACCTTCAAGCCACTATTCTACCATCACCCTGTCCCTTTCAAAGAATGGCATGATGCTATGACAGATGAGTTAAAAGCCACAGAAACAAAACTAGACTTGGTCGGTTGTTCCTCTTTCTCTTTATTGTTCTAATTTTATCAGAAGTTCATGTCTTATAACAAGTTGTCCTCGAGTTATAAGAAATTCTTACTCACTTCTACCTTCAAGCCACTATTCTACCATCACCCTGTCCCTTTCAAAGAATGGCATGATGCTATGACAGATGAGTTAAAAGCCACAGAAACAAAACTAGACTTGGTCGGTTGTTCCTCTTTCTCTTTATTGTTCTAATTTTATCAGATGTCCTCCAAGGGACTCAGTTGTTCCTCTTCCTCCTACTCAACATTTCATAGGATGCAAATGGGTGTATAAAATCAAGCATGGAGCCGATACATCGATTGAACGATAAAGCAAGACTTGTAGCCAAGTGGTACACTCAACGAGAAGGCTTGATTATGTTGAAACGCTTTCTTCAGTTGCCAAGCTTTTGACCATCAAAATTTTATCAACTATGGTTGTATCAATGAAATGGGAACTAGTTCAACTTGACGTCAACGATGCATTTCTACCGTGATCTTGTTGAAGAAATTTACATGGATCTACCACTAGGATACAAACATGGTGTGGTTGCTAGAAAGGGGGAGCATTTACTATGTAAACTTAGCCAATCAATATATGGGCTTAAACAAATTTCTCAACAATGGTTTGATAAGTTTTCTCGCAATCAATATATGCCCTGTTATCCCTCGGATTCTCACAATCCAAGTTAGATTATTATTTGTTTACCTGTGGCTCTGGACATACTATTAATCTATGTTAATGATGTAGTAATAATTGGTGCTTTATCTACTAATATCTCCATTCTAAAGCAACACTTGAATTTTGTATTCAAGTTAAAAAAACCTTAGCAGCAACTCCTGGCCAAGGTCTCTTCTTAAAGGCATCTATTTTTCAAATACGTGCCTTCAGTGATGATTGGGCTTCTTGCCTTGACACTTGCAAGTCTACTACCAGTTTTTGTGTGTTTCTTGGTGATTCATCAGTCTCTTGGAAGTCAAAGAAGCAAGTGACAGATTTAAAATCATTAGCTGAAGCAGATAGAGGTTTAGCAACCACTGTTAGTGAAGTTTCTTGGCTTGTCCAACTGCTTAAAGACTTAGTGTTTTGTGATATAGTATTTTGTGATAGTACTGCTACCACTCACATAGCCTCAAATCTAGCTTTTCACGAAAGAACGAAGCACATATAGTTAGATTGTCACCTCGTGTTAGATCATGTAGCAAAAGGCAATATCAAATTGATGCCTATCCGGACTCATTCCCAATTGGCGGACATTTTCACTACGGCCTTGCTATCTTCATTTACACTACTATTGTCCAAGATGGGTGTCCTAAAGATACTAGGTCCATCTTGAAGGGGAGTAATGGAAATTAGTTATATTGTTGAAACTCCTGATATTTTGTTATTGGTGGTTATTTTGATATATCACCCACCTATGTGTACTTCCATTGGGTATTTATATTGCCCATTCTTAATAATAAAGATTGAGCAAAGCTATTTAGTCTTGGTGTTAGTTTAATAAAGACTGATGTTATCTGTATCATACATCTGACCTGTGATTGATTGGAATGGCATCTTGAAAATAGAATATCATATCTTAAGCAAAGAAGTTAATTGAAGGTATGGGAAGAAAAAAAAAAGGGTGATTCACTGGGAAAGCATATTCCAGAAATTGACAACGTCAGAAGAAGCAGGATGATGTGGAGAAAGCGGGTGGCAGAATGAGAAGAACAGTGGTGGATGAGTTCATCTCATAAGTTGTCTCTTCTTTCCTTATGTGTAGTAGCATTAACAAATTGCAGAAATTATTCTCTGTTCTTGTCTTTCAGGGTTTTATTACACCCAATATTTCGACATTTGGGCAATGTCAGAAAGAAAGTGACCGTTTTCAGGGGTTGTAGGGGAAGAATTTAATGTATCGGACCAAATGAAACAAAATACAGAATATATATATATATAATATGTATTTTGTGGTTTATATGTGGCAACTCAAAATGTACTATGAAGTTTTAATTAACTGAATGTATTATATTCAGTTTTTCTT

mRNA sequence

ATGGCAACTCCACCACCACCGACGGCTCCGCCAGGGACCGGGAATTTCGAGGGGGGGCCGCTGCCAGCAGCGCCTCAGCCTCCGGGCACGGACATGACTGGAATTTGCTTTAGAGACCAGCTTTGGCTCAATACTTACCCTCTTGATCGAAACTTGGTTTTCGATTACTTCGCCTTGTCGCCTTTCTACGACTGGACTTGTAACAACGAACAACTCAGAATGCGCTCCATTCACCCCCTCGATCTTTCTCAACTCTCAAAAATGACAGGCATAGAGTACATGCTGAATGAAGTTATGGAGCCTCACCTTTTCGTTTTCAGAAAGCAAAAAAGGGATGGTCCTGAGAAAGTCACACCGATGCTGACTTATTATATCTTGGATGGTTCAATCTACCAGGCGCCTCAACTTTGCAGTGTTTTTGCTGCTCGCGTTAGTCGGGCACTGTATTACATATCAAAGGCCTTTACCACTGCTTCCTCAAAGTTGGAGAAGATAGGATATGTTGATTCTGAAAATGAGAGTGAAGAAGTAAAACCTGCAAAAGAAACCATTAACTTTAAGGAAGTAAAGCGAGTTGATCATATTCTTGCATCTTTACAGCGCAAGCTGCCACCTGCCCCACCACCCCCACCATTTCCTGAAGGTTATGCTCCTGCTGCCACAGCAGAGACAGAAAAAGGCCCTGAAAATCAGCAAGGAGAGTCACAACAGCCTTCTGCAGATCCCATTATTGATCAGGGTCCAGCTAAAAGGATGAAATTTTCAAGTGTTTAG

Coding sequence (CDS)

ATGGCAACTCCACCACCACCGACGGCTCCGCCAGGGACCGGGAATTTCGAGGGGGGGCCGCTGCCAGCAGCGCCTCAGCCTCCGGGCACGGACATGACTGGAATTTGCTTTAGAGACCAGCTTTGGCTCAATACTTACCCTCTTGATCGAAACTTGGTTTTCGATTACTTCGCCTTGTCGCCTTTCTACGACTGGACTTGTAACAACGAACAACTCAGAATGCGCTCCATTCACCCCCTCGATCTTTCTCAACTCTCAAAAATGACAGGCATAGAGTACATGCTGAATGAAGTTATGGAGCCTCACCTTTTCGTTTTCAGAAAGCAAAAAAGGGATGGTCCTGAGAAAGTCACACCGATGCTGACTTATTATATCTTGGATGGTTCAATCTACCAGGCGCCTCAACTTTGCAGTGTTTTTGCTGCTCGCGTTAGTCGGGCACTGTATTACATATCAAAGGCCTTTACCACTGCTTCCTCAAAGTTGGAGAAGATAGGATATGTTGATTCTGAAAATGAGAGTGAAGAAGTAAAACCTGCAAAAGAAACCATTAACTTTAAGGAAGTAAAGCGAGTTGATCATATTCTTGCATCTTTACAGCGCAAGCTGCCACCTGCCCCACCACCCCCACCATTTCCTGAAGGTTATGCTCCTGCTGCCACAGCAGAGACAGAAAAAGGCCCTGAAAATCAGCAAGGAGAGTCACAACAGCCTTCTGCAGATCCCATTATTGATCAGGGTCCAGCTAAAAGGATGAAATTTTCAAGTGTTTAG

Protein sequence

MATPPPPTAPPGTGNFEGGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCSVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPAKETINFKEVKRVDHILASLQRKLPPAPPPPPFPEGYAPAATAETEKGPENQQGESQQPSADPIIDQGPAKRMKFSSV

Homology

[Close]

BLAST of CsaV3_3G023410 vs. NCBI nr
Match: XP_004149176.2 (PREDICTED: mediator of RNA polymerase II transcription subunit 6 isoform X1 [Cucumis sativus] >KGN58013.1 hypothetical protein Csa_3G434940 [Cucumis sativus])

HSP 1 Score: 497.7 bits (1280), Expect = 2.4e-137
Identity = 257/257 (100.00%), Postives = 257/257 (100.00%), Query Frame = 0


Query: 1   MATPPPPTAPPGTGNFEGGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALS 60
           MATPPPPTAPPGTGNFEGGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALS
Sbjct: 1   MATPPPPTAPPGTGNFEGGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALS 60

Query: 61  PFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPM 120
           PFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPM
Sbjct: 61  PFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPM 120

Query: 121 LTYYILDGSIYQAPQLCSVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPA 180
           LTYYILDGSIYQAPQLCSVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPA
Sbjct: 121 LTYYILDGSIYQAPQLCSVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPA 180

Query: 181 KETINFKEVKRVDHILASLQRKLPPXXXXXXXXEGYAPAATAETEKGPENQQGESQQPSA 240
           KETINFKEVKRVDHILASLQRKLPPXXXXXXXXEGYAPAATAETEKGPENQQGESQQPSA
Sbjct: 181 KETINFKEVKRVDHILASLQRKLPPXXXXXXXXEGYAPAATAETEKGPENQQGESQQPSA 240

Query: 241 DPIIDQGPAKRMKFSSV 258
           DPIIDQGPAKRMKFSSV
Sbjct: 241 DPIIDQGPAKRMKFSSV 257

[Close]

BLAST of CsaV3_3G023410 vs. NCBI nr
Match: XP_008447572.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 6 isoform X1 [Cucumis melo])

HSP 1 Score: 483.4 bits (1243), Expect = 4.8e-133
Identity = 250/255 (98.04%), Postives = 253/255 (99.22%), Query Frame = 0


Query: 1   MATPPPP-TAPPGTGNFEGGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFAL 60
           MATPPPP TAPPGTGNFEGGP+PAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFAL
Sbjct: 1   MATPPPPTTAPPGTGNFEGGPMPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFAL 60

Query: 61  SPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTP 120
           SPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTP
Sbjct: 61  SPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTP 120

Query: 121 MLTYYILDGSIYQAPQLCSVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKP 180
           MLTYYILDGSIYQAPQLC+VFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKP
Sbjct: 121 MLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKP 180

Query: 181 AKETINFKEVKRVDHILASLQRKLPPXXXXXXXXEGYAPAATAETEKGPENQQGESQQPS 240
           AKETINFKEVKRVDHILASLQRKLPPXXXXXXXXEGYAPA TA+TEKGPENQQGESQQPS
Sbjct: 181 AKETINFKEVKRVDHILASLQRKLPPXXXXXXXXEGYAPAPTADTEKGPENQQGESQQPS 240

Query: 241 ADPIIDQGPAKRMKF 255
           ADPIIDQGPAKRMKF
Sbjct: 241 ADPIIDQGPAKRMKF 255

[Close]

BLAST of CsaV3_3G023410 vs. NCBI nr
Match: XP_023524903.1 (mediator of RNA polymerase II transcription subunit 6 [Cucurbita pepo subsp. pepo] >XP_023524905.1 mediator of RNA polymerase II transcription subunit 6 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 449.5 bits (1155), Expect = 7.6e-123
Identity = 235/254 (92.52%), Postives = 240/254 (94.49%), Query Frame = 0


Query: 1   MATPPPPTAPPGTGNFEGGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALS 60
           MATPP    PPG GNFEGGP PAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALS
Sbjct: 1   MATPP----PPGIGNFEGGPPPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALS 60

Query: 61  PFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPM 120
           PFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPM
Sbjct: 61  PFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPM 120

Query: 121 LTYYILDGSIYQAPQLCSVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPA 180
           LTYYILDGSIYQAPQLC+VFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPA
Sbjct: 121 LTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPA 180

Query: 181 KETINFKEVKRVDHILASLQRKLPPXXXXXXXXEGYAPAATAETEKGPENQQGESQQPSA 240
           K TI+FKEVKRVD ILASLQRKLP XXXXXXXXEGY PA  +E EKGPE+QQGE QQP+A
Sbjct: 181 KGTIDFKEVKRVDRILASLQRKLPXXXXXXXXXEGYVPAPASEAEKGPESQQGELQQPAA 240

Query: 241 DPIIDQGPAKRMKF 255
           DPIIDQGPAKRMKF
Sbjct: 241 DPIIDQGPAKRMKF 250

[Close]

BLAST of CsaV3_3G023410 vs. NCBI nr
Match: XP_022998637.1 (mediator of RNA polymerase II transcription subunit 6 [Cucurbita maxima])

HSP 1 Score: 445.3 bits (1144), Expect = 1.4e-121
Identity = 233/254 (91.73%), Postives = 239/254 (94.09%), Query Frame = 0


Query: 1   MATPPPPTAPPGTGNFEGGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALS 60
           MATPP    PPG GNFEGGP PAAPQ PGTDMTGICFRDQLWLNTYPLDRNLVFDYFALS
Sbjct: 1   MATPP----PPGIGNFEGGPPPAAPQQPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALS 60

Query: 61  PFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPM 120
           PFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPM
Sbjct: 61  PFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPM 120

Query: 121 LTYYILDGSIYQAPQLCSVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPA 180
           LTYYILDGSIYQAPQLC+VFAARVSRALYYISKAFTTASSKLEKIGYVDSENESE+VKPA
Sbjct: 121 LTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEDVKPA 180

Query: 181 KETINFKEVKRVDHILASLQRKLPPXXXXXXXXEGYAPAATAETEKGPENQQGESQQPSA 240
           K TI+FKEVKRVD ILASLQRKLP XXXXXXXXEGY PA  +E EKGPE+QQGE QQP+A
Sbjct: 181 KGTIDFKEVKRVDRILASLQRKLPXXXXXXXXXEGYVPAPASEAEKGPESQQGELQQPAA 240

Query: 241 DPIIDQGPAKRMKF 255
           DPIIDQGPAKRMKF
Sbjct: 241 DPIIDQGPAKRMKF 250

[Close]

BLAST of CsaV3_3G023410 vs. NCBI nr
Match: XP_011651474.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 6 isoform X2 [Cucumis sativus])

HSP 1 Score: 442.6 bits (1137), Expect = 9.3e-121
Identity = 236/257 (91.83%), Postives = 236/257 (91.83%), Query Frame = 0


Query: 1   MATPPPPTAPPGTGNFEGGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALS 60
           MATPPPPTAPPGTGNFEGGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALS
Sbjct: 1   MATPPPPTAPPGTGNFEGGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALS 60

Query: 61  PFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPM 120
           PFYDWTCNNEQLRMRSIHPLDLSQLS                     KQKRDGPEKVTPM
Sbjct: 61  PFYDWTCNNEQLRMRSIHPLDLSQLS---------------------KQKRDGPEKVTPM 120

Query: 121 LTYYILDGSIYQAPQLCSVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPA 180
           LTYYILDGSIYQAPQLCSVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPA
Sbjct: 121 LTYYILDGSIYQAPQLCSVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPA 180

Query: 181 KETINFKEVKRVDHILASLQRKLPPXXXXXXXXEGYAPAATAETEKGPENQQGESQQPSA 240
           KETINFKEVKRVDHILASLQRKLPPXXXXXXXXEGYAPAATAETEKGPENQQGESQQPSA
Sbjct: 181 KETINFKEVKRVDHILASLQRKLPPXXXXXXXXEGYAPAATAETEKGPENQQGESQQPSA 236

Query: 241 DPIIDQGPAKRMKFSSV 258
           DPIIDQGPAKRMKFSSV
Sbjct: 241 DPIIDQGPAKRMKFSSV 236

[Close]

BLAST of CsaV3_3G023410 vs. TAIR10
Match: AT3G21350.2 (RNA polymerase transcriptional regulation mediator-related)

HSP 1 Score: 298.5 bits (763), Expect = 3.9e-81
Identity = 175/290 (60.34%), Postives = 193/290 (66.55%), Query Frame = 0


Query: 8   TAPPGTGNFEGGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTC 67
           TA    GN     +P   QPPGTDMTGI FRDQLW+N+YPLDRN +FDYFALSPFYD TC
Sbjct: 10  TADTFNGN-AADQIPPPLQPPGTDMTGISFRDQLWINSYPLDRNYIFDYFALSPFYDTTC 69

Query: 68  NNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYYILD 127
           NNE LR RSIHPLDLS LSKMTG+EYML +  EP+LFVFRKQKRDGPEKVTPMLTYYILD
Sbjct: 70  NNEILRRRSIHPLDLSHLSKMTGLEYMLTDATEPNLFVFRKQKRDGPEKVTPMLTYYILD 129

Query: 128 GSIYQAPQLCSVFAARVSRALYYISKAFTTASSKLEKI---------------------- 187
           GSIYQAPQLCSVFAARVSR +Y ISKAFT A+SKLE I                      
Sbjct: 130 GSIYQAPQLCSVFAARVSRTIYNISKAFTDAASKLETIRQDLQVCLVAIVLSLSVNLGSY 189

Query: 188 ---------------GY------VDSENESEEVKPAKETINFKEVKRVDHILASLQRKLP 247
                          G+       +++NE  E KPA ET++ KE+KRVD IL SL RKL 
Sbjct: 190 FLLIFKLMANGEQVYGFNKFLFDTENQNEPAESKPASETVDLKEMKRVDVILTSLYRKLA 249

Query: 248 PXXXXXXXXEGYAPAATAETEKGPENQQGESQQPSADPIIDQGPAKRMKF 255
            XXXXXX  EGY        ++    Q GESQ P  DPIIDQGPAKRMKF
Sbjct: 250 XXXXXXXFPEGYVSQEALGEKEELGTQGGESQPPQVDPIIDQGPAKRMKF 298

[Close]

BLAST of CsaV3_3G023410 vs. Swiss-Prot
Match: sp|F4IXJ7|MED6_ARATH (Mediator of RNA polymerase II transcription subunit 6 OS=Arabidopsis thaliana OX=3702 GN=MED6 PE=1 SV=1)

HSP 1 Score: 298.5 bits (763), Expect = 7.1e-80
Identity = 175/290 (60.34%), Postives = 193/290 (66.55%), Query Frame = 0


Query: 8   TAPPGTGNFEGGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTC 67
           TA    GN     +P   QPPGTDMTGI FRDQLW+N+YPLDRN +FDYFALSPFYD TC
Sbjct: 10  TADTFNGN-AADQIPPPLQPPGTDMTGISFRDQLWINSYPLDRNYIFDYFALSPFYDTTC 69

Query: 68  NNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYYILD 127
           NNE LR RSIHPLDLS LSKMTG+EYML +  EP+LFVFRKQKRDGPEKVTPMLTYYILD
Sbjct: 70  NNEILRRRSIHPLDLSHLSKMTGLEYMLTDATEPNLFVFRKQKRDGPEKVTPMLTYYILD 129

Query: 128 GSIYQAPQLCSVFAARVSRALYYISKAFTTASSKLEKI---------------------- 187
           GSIYQAPQLCSVFAARVSR +Y ISKAFT A+SKLE I                      
Sbjct: 130 GSIYQAPQLCSVFAARVSRTIYNISKAFTDAASKLETIRQDLQVCLVAIVLSLSVNLGSY 189

Query: 188 ---------------GY------VDSENESEEVKPAKETINFKEVKRVDHILASLQRKLP 247
                          G+       +++NE  E KPA ET++ KE+KRVD IL SL RKL 
Sbjct: 190 FLLIFKLMANGEQVYGFNKFLFDTENQNEPAESKPASETVDLKEMKRVDVILTSLYRKLA 249

Query: 248 PXXXXXXXXEGYAPAATAETEKGPENQQGESQQPSADPIIDQGPAKRMKF 255
            XXXXXX  EGY        ++    Q GESQ P  DPIIDQGPAKRMKF
Sbjct: 250 XXXXXXXFPEGYVSQEALGEKEELGTQGGESQPPQVDPIIDQGPAKRMKF 298

[Close]

BLAST of CsaV3_3G023410 vs. Swiss-Prot
Match: sp|Q54PN3|MED6_DICDI (Putative mediator of RNA polymerase II transcription subunit 6 OS=Dictyostelium discoideum OX=44689 GN=med6 PE=3 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 9.7e-29
Identity = 74/181 (40.88%), Postives = 108/181 (59.67%), Query Frame = 0


Query: 31  DMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTG 90
           D+T + +RD LWL  YPL+   +  YF+ S FYD  CNNEQL+M+    LDLS L  M G
Sbjct: 65  DLTQVMWRDPLWLQMYPLNPQTILQYFSYSQFYDKNCNNEQLKMQR---LDLSALKNMDG 124

Query: 91  IEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCSVFAARVSRALYY 150
           +EY L + +EP  F+  KQ R  P  V     YY+++G+IYQAP+L  VF +RVS+++ +
Sbjct: 125 LEYELIKFVEPSFFLIAKQTRISPTDVLINTLYYVINGNIYQAPELHVVFKSRVSQSISH 184

Query: 151 ISKAFTTASSKLE---KIGY---VDSENESEEVK-PAKETINFKEVKRVDHILASLQRKL 205
           +S+AF + SS +      GY   +D  N+ E+ K  A      ++ KR+D ++ SL  K 
Sbjct: 185 LSEAFNSISSIVNWDIVNGYSLNLDPSNQQEKSKLAAYSRKQIEDTKRLDQLINSLFIKF 242

[Close]

BLAST of CsaV3_3G023410 vs. Swiss-Prot
Match: sp|Q921D4|MED6_MOUSE (Mediator of RNA polymerase II transcription subunit 6 OS=Mus musculus OX=10090 GN=Med6 PE=1 SV=2)

HSP 1 Score: 118.2 bits (295), Expect = 1.3e-25
Identity = 87/241 (36.10%), Postives = 123/241 (51.04%), Query Frame = 0


Query: 31  DMTGICFRDQLWLNTYPLDRNLVFDYFA--LSPFYDWTCNNEQLRMRSIHPLDLSQLSKM 90
           ++ GI + D  W+    L+   V DYF+   +PFYD TCNNE ++M+    L L  L++M
Sbjct: 9   NLLGISWVDSSWIPI--LNSGSVLDYFSERSNPFYDRTCNNEVVKMQR---LTLEHLNQM 68

Query: 91  TGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCSVFAARVSRAL 150
            GIEY+L    EP LF+ RKQ+R  P +V P+  YYI+ G IYQAP L SV  +RV  A+
Sbjct: 69  VGIEYILLHAQEPILFIIRKQQRQSPAQVIPLADYYIIAGVIYQAPDLGSVINSRVLTAV 128

Query: 151 YYISKAFTTASSKLE---KIGY---VDSENESEEVKP----AKETINFKEVKRVDHILAS 210
           + I  AF  A S        GY        E E+VKP     +E  +  + +RVD +L  
Sbjct: 129 HGIQSAFDEAMSYCRYHPSKGYWWHFKDHEEQEKVKPKAKRKEEPSSIFQRQRVDALLID 188

Query: 211 LQRKLPPXXXXXXXXEGYAPAATAETEKGPENQQGESQQPSADPIIDQ------GPAKRM 254
           L++K PP        E   P   A+ E  P  +  +S++  +   I Q       P KRM
Sbjct: 189 LRQKFPPRFVQQKSGEKPVPVDQAKKEAEPLPETVKSEEKESTKNIQQTVSTKGPPEKRM 244

[Close]

BLAST of CsaV3_3G023410 vs. Swiss-Prot
Match: sp|Q3SZY9|MED6_BOVIN (Mediator of RNA polymerase II transcription subunit 6 OS=Bos taurus OX=9913 GN=MED6 PE=2 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 2.5e-24
Identity = 83/241 (34.44%), Postives = 121/241 (50.21%), Query Frame = 0


Query: 31  DMTGICFRDQLWLNTYPLDRNLVFDYFA--LSPFYDWTCNNEQLRMRSIHPLDLSQLSKM 90
           ++ GI + D  W+    L+   V DYF+   +PFYD TCNNE ++M+    L L  L++M
Sbjct: 9   NLLGISWVDSSWIPI--LNSGSVLDYFSERSNPFYDRTCNNEVVKMQR---LTLEHLNQM 68

Query: 91  TGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCSVFAARVSRAL 150
            G+EY+L    EP LF+ RKQ+R  P +V P+  YYI+ G IYQAP L SV  +RV  A+
Sbjct: 69  VGVEYILLHAQEPILFIIRKQQRQSPTQVIPLADYYIIAGVIYQAPDLGSVINSRVLTAV 128

Query: 151 YYISKAFTTASSKLE---KIGY---VDSENESEEVKP----AKETINFKEVKRVDHILAS 210
           + I  AF  A S        GY        E ++VKP     +E  +  + +RVD +L  
Sbjct: 129 HGIQSAFDEAMSYCRYHPSKGYWWHFKDHEEQDKVKPKVKRKEEPSSIFQRQRVDALLLD 188

Query: 211 LQRKLPPXXXXXXXXEGYAPAATAETEKGPENQQGESQQPSADPIIDQ------GPAKRM 254
           L++K PP        E   P    + E  P  +  +S++      + Q       P KRM
Sbjct: 189 LRQKFPPKFVQQKSGEKPVPVDQTKKEAEPLPETVKSEEKETAKNVQQTVGTKGPPEKRM 244

[Close]

BLAST of CsaV3_3G023410 vs. Swiss-Prot
Match: sp|Q5RD94|MED6_PONAB (Mediator of RNA polymerase II transcription subunit 6 OS=Pongo abelii OX=9601 GN=MED6 PE=2 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 9.4e-24
Identity = 82/241 (34.02%), Postives = 120/241 (49.79%), Query Frame = 0


Query: 31  DMTGICFRDQLWLNTYPLDRNLVFDYFA--LSPFYDWTCNNEQLRMRSIHPLDLSQLSKM 90
           ++ GI + D  W+    L+   V DYF+   +PFYD TCNNE ++M+    L L  L++M
Sbjct: 9   NLLGISWVDSSWIPI--LNSGSVLDYFSERSNPFYDRTCNNEVVKMQR---LTLEHLNQM 68

Query: 91  TGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCSVFAARVSRAL 150
            GIEY+L    EP LF+ RKQ+R  P +V P+  YYI+ G IYQAP L SV  +RV  A+
Sbjct: 69  VGIEYILLHAQEPILFIIRKQQRQSPAQVIPLADYYIIAGVIYQAPDLGSVINSRVLTAV 128

Query: 151 YYISKAFTTASSKLE---KIGY---VDSENESEEVKP----AKETINFKEVKRVDHILAS 210
           + I  AF  A S        GY        E ++V+P     +E  +  + +RVD +L  
Sbjct: 129 HGIQSAFDEAMSYCRYHPSKGYWWHFKEHEEQDKVRPKAKRKEEPSSIFQRQRVDALLLD 188

Query: 211 LQRKLPPXXXXXXXXEGYAPAATAETEKGPENQQGESQQPSADPIIDQ------GPAKRM 254
           L++K PP        E   P    + E  P  +  + ++      + Q       P KRM
Sbjct: 189 LRQKFPPKFVQLKPGEKPVPVDQTKKEAEPVPETVKPEEKETTKNVQQTVSAKGPPEKRM 244

[Close]

BLAST of CsaV3_3G023410 vs. TrEMBL
Match: tr|A0A0A0L8C2|A0A0A0L8C2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G434940 PE=4 SV=1)

HSP 1 Score: 497.7 bits (1280), Expect = 1.6e-137
Identity = 257/257 (100.00%), Postives = 257/257 (100.00%), Query Frame = 0


Query: 1   MATPPPPTAPPGTGNFEGGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALS 60
           MATPPPPTAPPGTGNFEGGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALS
Sbjct: 1   MATPPPPTAPPGTGNFEGGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALS 60

Query: 61  PFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPM 120
           PFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPM
Sbjct: 61  PFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPM 120

Query: 121 LTYYILDGSIYQAPQLCSVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPA 180
           LTYYILDGSIYQAPQLCSVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPA
Sbjct: 121 LTYYILDGSIYQAPQLCSVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPA 180

Query: 181 KETINFKEVKRVDHILASLQRKLPPXXXXXXXXEGYAPAATAETEKGPENQQGESQQPSA 240
           KETINFKEVKRVDHILASLQRKLPPXXXXXXXXEGYAPAATAETEKGPENQQGESQQPSA
Sbjct: 181 KETINFKEVKRVDHILASLQRKLPPXXXXXXXXEGYAPAATAETEKGPENQQGESQQPSA 240

Query: 241 DPIIDQGPAKRMKFSSV 258
           DPIIDQGPAKRMKFSSV
Sbjct: 241 DPIIDQGPAKRMKFSSV 257

[Close]

BLAST of CsaV3_3G023410 vs. TrEMBL
Match: tr|A0A1S3BHR9|A0A1S3BHR9_CUCME (mediator of RNA polymerase II transcription subunit 6 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103489986 PE=4 SV=1)

HSP 1 Score: 483.4 bits (1243), Expect = 3.1e-133
Identity = 250/255 (98.04%), Postives = 253/255 (99.22%), Query Frame = 0


Query: 1   MATPPPP-TAPPGTGNFEGGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFAL 60
           MATPPPP TAPPGTGNFEGGP+PAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFAL
Sbjct: 1   MATPPPPTTAPPGTGNFEGGPMPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFAL 60

Query: 61  SPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTP 120
           SPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTP
Sbjct: 61  SPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTP 120

Query: 121 MLTYYILDGSIYQAPQLCSVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKP 180
           MLTYYILDGSIYQAPQLC+VFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKP
Sbjct: 121 MLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKP 180

Query: 181 AKETINFKEVKRVDHILASLQRKLPPXXXXXXXXEGYAPAATAETEKGPENQQGESQQPS 240
           AKETINFKEVKRVDHILASLQRKLPPXXXXXXXXEGYAPA TA+TEKGPENQQGESQQPS
Sbjct: 181 AKETINFKEVKRVDHILASLQRKLPPXXXXXXXXEGYAPAPTADTEKGPENQQGESQQPS 240

Query: 241 ADPIIDQGPAKRMKF 255
           ADPIIDQGPAKRMKF
Sbjct: 241 ADPIIDQGPAKRMKF 255

[Close]

BLAST of CsaV3_3G023410 vs. TrEMBL
Match: tr|A0A1S3BHQ9|A0A1S3BHQ9_CUCME (Mediator of RNA polymerase II transcription subunit 6 OS=Cucumis melo OX=3656 GN=LOC103489986 PE=3 SV=1)

HSP 1 Score: 428.3 bits (1100), Expect = 1.2e-116
Identity = 229/255 (89.80%), Postives = 232/255 (90.98%), Query Frame = 0


Query: 1   MATPPPP-TAPPGTGNFEGGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFAL 60
           MATPPPP TAPPGTGNFEGGP+PAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFAL
Sbjct: 1   MATPPPPTTAPPGTGNFEGGPMPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFAL 60

Query: 61  SPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTP 120
           SPFYDWTCNNEQLRMRSIHPLDLSQLS                     KQKRDGPEKVTP
Sbjct: 61  SPFYDWTCNNEQLRMRSIHPLDLSQLS---------------------KQKRDGPEKVTP 120

Query: 121 MLTYYILDGSIYQAPQLCSVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKP 180
           MLTYYILDGSIYQAPQLC+VFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKP
Sbjct: 121 MLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKP 180

Query: 181 AKETINFKEVKRVDHILASLQRKLPPXXXXXXXXEGYAPAATAETEKGPENQQGESQQPS 240
           AKETINFKEVKRVDHILASLQRKLPPXXXXXXXXEGYAPA TA+TEKGPENQQGESQQPS
Sbjct: 181 AKETINFKEVKRVDHILASLQRKLPPXXXXXXXXEGYAPAPTADTEKGPENQQGESQQPS 234

Query: 241 ADPIIDQGPAKRMKF 255
           ADPIIDQGPAKRMKF
Sbjct: 241 ADPIIDQGPAKRMKF 234

[Close]

BLAST of CsaV3_3G023410 vs. TrEMBL
Match: tr|A0A061GC41|A0A061GC41_THECC (RNA polymerase transcriptional regulation mediator-related isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_028940 PE=4 SV=1)

HSP 1 Score: 397.9 bits (1021), Expect = 1.7e-107
Identity = 215/259 (83.01%), Postives = 227/259 (87.64%), Query Frame = 0


Query: 1   MATPP--PPTAPPGTGNFEGGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFA 60
           MATPP  PP A    GNFE  P P   QPPGTDMTGICFRDQLWLNTYPLDRNL+FDYFA
Sbjct: 1   MATPPVAPPQA-AAAGNFEAPP-PLPMQPPGTDMTGICFRDQLWLNTYPLDRNLIFDYFA 60

Query: 61  LSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVT 120
           LSPFYDWTCNNEQLRM SIHPLD+SQLSKMTG+EYML+EVMEP+LFV RKQKRDGPEKVT
Sbjct: 61  LSPFYDWTCNNEQLRMHSIHPLDISQLSKMTGVEYMLSEVMEPNLFVIRKQKRDGPEKVT 120

Query: 121 PMLTYYILDGSIYQAPQLCSVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESE--E 180
           PML YYILDGSIYQAPQLC+VFAARV RALYYISKAFTTA+SKLEKIGYVD+ENESE  E
Sbjct: 121 PMLAYYILDGSIYQAPQLCNVFAARVGRALYYISKAFTTAASKLEKIGYVDTENESETFE 180

Query: 181 VKPAKETINFKEVKRVDHILASLQRKLPPXXXXXXXXEGYAPAATAETEKGPENQQG-ES 240
            K  KETI+FKEVKRVDHILASLQRKLPPXXXXXX  EG+ P ATAE EK PENQQ  E+
Sbjct: 181 SKGGKETIDFKEVKRVDHILASLQRKLPPXXXXXXFPEGFIPLATAEAEKDPENQQAVET 240

Query: 241 QQPSADPIIDQGPAKRMKF 255
           Q P+ DPIIDQGPAKRMKF
Sbjct: 241 QPPAIDPIIDQGPAKRMKF 257

[Close]

BLAST of CsaV3_3G023410 vs. TrEMBL
Match: tr|A0A2I4GHB2|A0A2I4GHB2_9ROSI (mediator of RNA polymerase II transcription subunit 6-like OS=Juglans regia OX=51240 GN=LOC109007876 PE=4 SV=1)

HSP 1 Score: 397.5 bits (1020), Expect = 2.3e-107
Identity = 213/256 (83.20%), Postives = 221/256 (86.33%), Query Frame = 0


Query: 1   MATPPPPTAPPGTGNFEGGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALS 60
           MATPP  + PP     EGG  PA P  PGTDMTGICFRDQLWLNTYPLDRNLVFDYFALS
Sbjct: 1   MATPPVASVPPANQGLEGGQ-PAPPXXPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALS 60

Query: 61  PFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPM 120
           PFYDWTCNNEQLRMRSIHPLDLS LSKM GIEYML EVMEPHLFV RKQKRDGPEKVTPM
Sbjct: 61  PFYDWTCNNEQLRMRSIHPLDLSHLSKMAGIEYMLYEVMEPHLFVIRKQKRDGPEKVTPM 120

Query: 121 LTYYILDGSIYQAPQLCSVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESE--EVK 180
           LTYY+LDGSIYQAPQLC+VFAARV RALYYISKAFTTA+SKLEKIGYVD+EN+S   E K
Sbjct: 121 LTYYVLDGSIYQAPQLCNVFAARVGRALYYISKAFTTAASKLEKIGYVDAENDSAALESK 180

Query: 181 PAKETINFKEVKRVDHILASLQRKLPPXXXXXXXXEGYAPAATAETEKGPEN-QQGESQQ 240
            AKETI+FKEVKRVDHILASLQRKLPPXXXXXX  EGY P  TA+ EKGPE  Q GE Q 
Sbjct: 181 VAKETIDFKEVKRVDHILASLQRKLPPXXXXXXFPEGYVPPHTADAEKGPEGPQSGEPQA 240

Query: 241 PSADPIIDQGPAKRMK 254
           PS DPIIDQGPAKRMK
Sbjct: 241 PSVDPIIDQGPAKRMK 255

The following BLAST results are available for this feature:

BLAST of CsaV3_3G023410 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004149176.2	2.4e-137	100.00	PREDICTED: mediator of RNA polymerase II transcription subunit 6 isoform X1 [Cuc...	[more]
XP_008447572.1	4.8e-133	98.04	PREDICTED: mediator of RNA polymerase II transcription subunit 6 isoform X1 [Cuc...	[more]
XP_023524903.1	7.6e-123	92.52	mediator of RNA polymerase II transcription subunit 6 [Cucurbita pepo subsp. pep...	[more]
XP_022998637.1	1.4e-121	91.73	mediator of RNA polymerase II transcription subunit 6 [Cucurbita maxima]	[more]
XP_011651474.1	9.3e-121	91.83	PREDICTED: mediator of RNA polymerase II transcription subunit 6 isoform X2 [Cuc...	[more]

BLAST of CsaV3_3G023410 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G21350.2	3.9e-81	60.34	RNA polymerase transcriptional regulation mediator-related	[more]

BLAST of CsaV3_3G023410 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|F4IXJ7\|MED6_ARATH	7.1e-80	60.34	Mediator of RNA polymerase II transcription subunit 6 OS=Arabidopsis thaliana OX...	[more]
sp\|Q54PN3\|MED6_DICDI	9.7e-29	40.88	Putative mediator of RNA polymerase II transcription subunit 6 OS=Dictyostelium ...	[more]
sp\|Q921D4\|MED6_MOUSE	1.3e-25	36.10	Mediator of RNA polymerase II transcription subunit 6 OS=Mus musculus OX=10090 G...	[more]
sp\|Q3SZY9\|MED6_BOVIN	2.5e-24	34.44	Mediator of RNA polymerase II transcription subunit 6 OS=Bos taurus OX=9913 GN=M...	[more]
sp\|Q5RD94\|MED6_PONAB	9.4e-24	34.02	Mediator of RNA polymerase II transcription subunit 6 OS=Pongo abelii OX=9601 GN...	[more]

BLAST of CsaV3_3G023410 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L8C2\|A0A0A0L8C2_CUCSA	1.6e-137	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G434940 PE=4 SV=1	[more]
tr\|A0A1S3BHR9\|A0A1S3BHR9_CUCME	3.1e-133	98.04	mediator of RNA polymerase II transcription subunit 6 isoform X1 OS=Cucumis melo...	[more]
tr\|A0A1S3BHQ9\|A0A1S3BHQ9_CUCME	1.2e-116	89.80	Mediator of RNA polymerase II transcription subunit 6 OS=Cucumis melo OX=3656 GN...	[more]
tr\|A0A061GC41\|A0A061GC41_THECC	1.7e-107	83.01	RNA polymerase transcriptional regulation mediator-related isoform 1 OS=Theobrom...	[more]
tr\|A0A2I4GHB2\|A0A2I4GHB2_9ROSI	2.3e-107	83.20	mediator of RNA polymerase II transcription subunit 6-like OS=Juglans regia OX=5...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006357	regulation of transcription from RNA polymerase II promoter

Vocabulary: **Cellular Component**
Term	Definition
GO:0016592	mediator complex

Vocabulary: **Molecular Function**
Term	Definition
GO:0003712	transcription cofactor activity

Vocabulary: **INTERPRO**
Term	Definition
IPR016820	Mediator_Med6_met/pln
IPR038566	Med6_sf
IPR007018	Mediator_Med6

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0006357	regulation of transcription from RNA polymerase II promoter
cellular_component	GO:0016592	mediator complex
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0003712	transcription cofactor activity
molecular_function	GO:0001104	RNA polymerase II transcription cofactor activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G023410.1	CsaV3_3G023410.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007018	Mediator complex, subunit Med6	PFAM	PF04934	Med6	coord: 35..160 e-value: 3.1E-41 score: 140.2
IPR007018	Mediator complex, subunit Med6	PANTHER	PTHR13104	MED-6-RELATED	coord: 28..242
IPR038566	Med6 core domain superfamily	GENE3D	G3DSA:3.10.450.580		coord: 29..159 e-value: 2.9E-38 score: 132.5
IPR016820	Mediator complex, subunit Med6, metazoa/plant	PIRSF	PIRSF023869	MED6_meta/plant	coord: 20..254 e-value: 1.2E-88 score: 294.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 202..216
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 199..257
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 225..242

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_3G023410	CSPI03G23680	Wild cucumber (PI 183967)	cpicucB144
CsaV3_3G023410	Cucsa.021650	Cucumber (Gy14) v1	cgycucB491
CsaV3_3G023410	CmaCh01G000840	Cucurbita maxima (Rimu)	cmacucB0540
CsaV3_3G023410	CmoCh01G000830	Cucurbita moschata (Rifu)	cmocucB0524
CsaV3_3G023410	Cp4.1LG02g14420	Cucurbita pepo (Zucchini)	cpecucB0696
CsaV3_3G023410	CsGy3G022610	Cucumber (Gy14) v2	cgybcucB117
CsaV3_3G023410	Cla012638	Watermelon (97103) v1	cucwmB226
CsaV3_3G023410	MELO3C013015	Melon (DHL92) v3.5.1	cucmeB220
CsaV3_3G023410	ClCG07G013490	Watermelon (Charleston Gray)	cucwcgB263
CsaV3_3G023410	Lsi07G005380	Bottle gourd (USVL1VR-Ls)	cuclsiB255
CsaV3_3G023410	MELO3C013015.2	Melon (DHL92) v3.6.1	cucmedB213
CsaV3_3G023410	Cla97C07G140280	Watermelon (97103) v2	cucwmbB243
CsaV3_3G023410	Bhi01G002598	Wax gourd	cucwgoB275

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_3G023410	Watermelon (97103) v1	cucwmB191