CSPI03G23680 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI03G23680
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Mediator of RNA polymerase II transcription subunit 6
Location	Chr3 : 20691359 .. 20695007 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CACAATTGTTTGAAAAATAATGTTGTTATACAGTTTGATTGCTAAGACTGCTATCCATTGTGGTTGCAATACAAATTCATCTCCATACCGTGGAGGTTGATACGTTTTTGTTACATGACTTCTCCCTCTTCACTCTCGGTCGTGATCGTCGGGAAACAAAGAAAAAGGGTGTAGTGCTTTCACTTACGGTGGAGGGATCTGTAAAATTCAACACTTCGTGGCCAGAAAAGTAAAATAGCGCACAAATGGCAACTCCACCACCACCGACGGCTCCGCCAGGGACCGGGAATTTCGAGGGGGGGCCGCTGCCAGCAGCGCCTCAGCCTCCGGGCACGGACATGACTGGAATTTGCTTTAGAGACCAGCTTTGGCTCAATACTTACCCTCTTGATCGAAACTTGGTTTTCGATTACTTCGCCTTGTCGCCTTTCTACGACTGGACTTGTAACAACGAACAACTCAGAATGCGCTCCATTCACCCCCTCGATCTTTCTCAACTCTCGTACGATTTCTCGTCTTCTTTTTTTTTTTTTTTTTTTAAATTTCTATTGACAGGATTTCGTTTTCTCTATTAATTGATTTCTTCGTTTAATTGATTGTATGTATCTTACATATTTCCCCCCGTACTTGGATAATTCAACCTTGTTCTTTATATGTTCTTGTTTTATTAAGATTTCCGAAATTTGTGAATTGCAACCCTAGGATTCAGTTTCATTTAGGCATTACCATGATGGGTAATCTTCTGTTCAACAGAAAAATGACAGGCATAGAGTACATGCTGAATGAAGTTATGGAGCCTCACCTTTTCGTTTTCAGAAAGCAAAAAAGGGATGGTCCTGAGAAAGTCACACCGATGCTGACTTATTATATCTTGGATGGTTCAATCTACCAGGCGCCTCAACTTTGCAGTGTTTTTGCTGCTCGCGTTGTGAGATTGGCATACTTATCTTTCTTTGTCACTTTCATTTGTTTGATGCAATCTTAGTTTTTCTACTTTTTTCCTCATAATTCTTGCATTTGGATAATTTCTTAGTTCCATTTAGTAAATTATCGTGTTGGGTAACATCTCTTCAACTGGAAATTTAATTGCTGGATTCCTTTTTTCTTCTTTGTTTTGAAATTAATGTAGAATTTGTTTAAAACTGCAAGGCTATTATGTATTCTGCTTCTCTCTTCCTCTGTTTTTTTGTAATCTTACATTGAGTCTTCATCATACTGCAGAGTCGGGCACTGTATTACATATCAAAGGCCTTTACCACTGCTTCGTCAAAGTTGGAGAAGATAGGATATGGTATCTTCTAGCTATTAGTGATATATTTTTTGCTCACACTATTTTAAGTTATAGTTAAAAGATACTCACCAATGACTTTACACCTCACGGTTCTGCTATCTTAACACACATTTTTTAAGTTTTATTTAAGTCGTGCTAATTTTCTTTGAAAGAATTCTTTGAGCTTTTCAAGATTAACAGTTGGTTTCTTATTTTGAGATCACTTAACCTCGGTTTGGTAACCATTTTGTTTTTTGTTTTTAACTTTTTATAATTAAACCTATTTCCTCCTCATGTCTTACAATTTTGCATCTTTCTAAAATACAATGGTTGAACGCTTAGCCAAATTCCAAAAATAAGAACAACTTTTTAAAAGCTACTTTTTAATTTTCAAATTTTGACTTGGTTTTTAAAACCATCAGTATAATGTAGATAACAAAGGAAGAAAGTTGGAGGTGGAAATAGTGTTTTAGGCTTAAGTTTTCAAAAACAAAAACCAAAAACAAAATGGTTACTGTGAGGACTCTTCCTAAGAAGAACAAGATCTCAATTTATTGAATTATATCTATGAAGAAATAAAAGATAATCCAAGAATAAAGGAACTTGTGAGCCTCCCTCTTGAGTATTTTCACCCAAGCCCTAGATCACTCCACAAATTAACCTCCCTTCATTCACTCATTCTCTTGCTATTTATGCAACATGCTGTAGAAATTTTCATCGAAAGACCATTATACTAACATGCTAATATTCTTATCTAGGTATCTAACAGTCACCAAATGGGCATTGGCCTTAGTGTTTAGTTTTCTCTTGTTTTATTTGATTAGGATTGTTTCAGTTTTCTGCGTAGATCTTACACTTTGTTAAAGGGTTTGTGGGTTTGTTGTTTTCTTTTTGAACTTTTGTATCTTGAGCATCAACCTCTTTACATCATTTCAGAGAATTAGAGACTCCTCAATACAAAAAACCAAGAAAGACCAAATTTTGATGCTTTCAGGCTTTAGATAGTTGATATTTAAAGCACTCCAGTAGGCTTTATGAATGTTCTTTTTTATTCAGACTTCATTCTGAAATCAAATTTTTGGGTCTTATATGGAATAGTTCATTCACATATGAAATGTAGAATGAACTTTAAAGATACAACACTGCCTAAATGCGTAACAAACTGTTTTCTCATTTCTGGTTCAGTTGATTCTGAAAATGAGAGTGAAGAAGTAAAACCTGCAAAAGAAACCATTAACTTTAAGGAAGTAAAGCGAGTTGATCATATTCTTGCATCTTTACAGCGCAAGGTAACTTTTTTCAACATCACAAATCATCTACTCTCTATTGACATAATCTGCATGAGCTTCATCTTTACTATAACAGAAAGTTAATGTATAAATTGCGAAGTGCTAATTTATCTATTAAGAAGAAAGTGGTGAGAATTTGTATGCAGTTTTCCTATAAGTCATTATCACATTTCATTTAATAACAACAGAACTTTTTTGAAGTTTCATCAGTTTATTTAAGTTTTGAACAATATTACCAAACCTAATCTAACTACTCACGAACCACTTACTCATTTTGAATGGAGAACTAATGACTTAGGCTTCAAATGTGTCCAGATTCAAATATATTGTACCTGTAAATAATTGAAATTAATTCAATTGAACTTGTAAAACAATTAAATTATCTAAATCGATAAACTGCTGGTATAGTATACAAATGACTTTATGTGTGTCCATATTAATGGTTTATATTTTTCATATTGAAGATTTGGCTGGTCTTTTTGCCTATCCTAATTAAGAGACAAATCTTCTTGTTAAAAATTACAGCTGCCACCTGCCCCACCACCCCCACCATTTCCTGAAGGTTATGCTCCTGCTGCCACAGCAGAGACAGAAAAAGGCCCTGAAAATCAGCAAGGAGAGTCACAACAGCCTTCTGCAGATCCCATTATTGATCAGGGTCCAGCTAAAAGGATGAAATTTTCAAGTGTTTAGGCTACCTTGCCTGTTGAGAAGCCTATTTAATCCTACAATTGAAATTCAACATGGATGACATCCCTGCACAAAGCATGGTGAGTTGTGAACACACACACACACACACACACACACACACCCCCAAAAAAAAAAAGAAGAAGAAAAGAGGAAAAAGGTCAAAGAGTTGGAATCTGCCTTGTGAAAAGCCTGTAGTTATAGACTTAACTTGTGATAATCCATTGTTTTAGTAGTAACTTGTACTACACTACCATGTAACCATCACTTCCTGATTTTGTTAGCTAGAATTGTTTGATACTCATATGACATACCACTAGTTGCTGTGTCTTTGTATTGTGATAACTTGGGAAGAAGGTTTTTAATATTGAACATGGTAATATAATTCTGCAATATCTTGGGC

mRNA sequence

ATGGCAACTCCACCACCACCGACGGCTCCGCCAGGGACCGGGAATTTCGAGGGGGGGCCGCTGCCAGCAGCGCCTCAGCCTCCGGGCACGGACATGACTGGAATTTGCTTTAGAGACCAGCTTTGGCTCAATACTTACCCTCTTGATCGAAACTTGGTTTTCGATTACTTCGCCTTGTCGCCTTTCTACGACTGGACTTGTAACAACGAACAACTCAGAATGCGCTCCATTCACCCCCTCGATCTTTCTCAACTCTCAAAAATGACAGGCATAGAGTACATGCTGAATGAAGTTATGGAGCCTCACCTTTTCGTTTTCAGAAAGCAAAAAAGGGATGGTCCTGAGAAAGTCACACCGATGCTGACTTATTATATCTTGGATGGTTCAATCTACCAGGCGCCTCAACTTTGCAGTGTTTTTGCTGCTCGCGTTAGTCGGGCACTGTATTACATATCAAAGGCCTTTACCACTGCTTCGTCAAAGTTGGAGAAGATAGGATATGTTGATTCTGAAAATGAGAGTGAAGAAGTAAAACCTGCAAAAGAAACCATTAACTTTAAGGAAGTAAAGCGAGTTGATCATATTCTTGCATCTTTACAGCGCAAGCTGCCACCTGCCCCACCACCCCCACCATTTCCTGAAGGTTATGCTCCTGCTGCCACAGCAGAGACAGAAAAAGGCCCTGAAAATCAGCAAGGAGAGTCACAACAGCCTTCTGCAGATCCCATTATTGATCAGGGTCCAGCTAAAAGGATGAAATTTTCAAGTGTTTAG

Coding sequence (CDS)

ATGGCAACTCCACCACCACCGACGGCTCCGCCAGGGACCGGGAATTTCGAGGGGGGGCCGCTGCCAGCAGCGCCTCAGCCTCCGGGCACGGACATGACTGGAATTTGCTTTAGAGACCAGCTTTGGCTCAATACTTACCCTCTTGATCGAAACTTGGTTTTCGATTACTTCGCCTTGTCGCCTTTCTACGACTGGACTTGTAACAACGAACAACTCAGAATGCGCTCCATTCACCCCCTCGATCTTTCTCAACTCTCAAAAATGACAGGCATAGAGTACATGCTGAATGAAGTTATGGAGCCTCACCTTTTCGTTTTCAGAAAGCAAAAAAGGGATGGTCCTGAGAAAGTCACACCGATGCTGACTTATTATATCTTGGATGGTTCAATCTACCAGGCGCCTCAACTTTGCAGTGTTTTTGCTGCTCGCGTTAGTCGGGCACTGTATTACATATCAAAGGCCTTTACCACTGCTTCGTCAAAGTTGGAGAAGATAGGATATGTTGATTCTGAAAATGAGAGTGAAGAAGTAAAACCTGCAAAAGAAACCATTAACTTTAAGGAAGTAAAGCGAGTTGATCATATTCTTGCATCTTTACAGCGCAAGCTGCCACCTGCCCCACCACCCCCACCATTTCCTGAAGGTTATGCTCCTGCTGCCACAGCAGAGACAGAAAAAGGCCCTGAAAATCAGCAAGGAGAGTCACAACAGCCTTCTGCAGATCCCATTATTGATCAGGGTCCAGCTAAAAGGATGAAATTTTCAAGTGTTTAG

Homology

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BLAST of CSPI03G23680 vs. Swiss-Prot
Match: MED6_ARATH (Mediator of RNA polymerase II transcription subunit 6 OS=Arabidopsis thaliana GN=MED6 PE=1 SV=1)

HSP 1 Score: 308.9 bits (790), Expect = 5.2e-83
Identity = 177/290 (61.03%), Postives = 193/290 (66.55%), Query Frame = 1


Query: 8   TAPPGTGNFEGGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTC 67
           TA    GN     +P   QPPGTDMTGI FRDQLW+N+YPLDRN +FDYFALSPFYD TC
Sbjct: 10  TADTFNGN-AADQIPPPLQPPGTDMTGISFRDQLWINSYPLDRNYIFDYFALSPFYDTTC 69

Query: 68  NNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYYILD 127
           NNE LR RSIHPLDLS LSKMTG+EYML +  EP+LFVFRKQKRDGPEKVTPMLTYYILD
Sbjct: 70  NNEILRRRSIHPLDLSHLSKMTGLEYMLTDATEPNLFVFRKQKRDGPEKVTPMLTYYILD 129

Query: 128 GSIYQAPQLCSVFAARVSRALYYISKAFTTASSKLEKI---------GYVDSEN------ 187
           GSIYQAPQLCSVFAARVSR +Y ISKAFT A+SKLE I           V S +      
Sbjct: 130 GSIYQAPQLCSVFAARVSRTIYNISKAFTDAASKLETIRQDLQVCLVAIVLSLSVNLGSY 189

Query: 188 ---------ESEEV-------------------KPAKETINFKEVKRVDHILASLQRKLP 247
                      E+V                   KPA ET++ KE+KRVD IL SL RKL 
Sbjct: 190 FLLIFKLMANGEQVYGFNKFLFDTENQNEPAESKPASETVDLKEMKRVDVILTSLYRKLA 249

Query: 248 PAPPPPPFPEGYAPAATAETEKGPENQQGESQQPSADPIIDQGPAKRMKF 255
           P PPPPPFPEGY        ++    Q GESQ P  DPIIDQGPAKRMKF
Sbjct: 250 PPPPPPPFPEGYVSQEALGEKEELGTQGGESQPPQVDPIIDQGPAKRMKF 298

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BLAST of CSPI03G23680 vs. Swiss-Prot
Match: MED6_DICDI (Putative mediator of RNA polymerase II transcription subunit 6 OS=Dictyostelium discoideum GN=med6 PE=3 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 8.1e-28
Identity = 77/202 (38.12%), Postives = 114/202 (56.44%), Query Frame = 1


Query: 31  DMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTG 90
           D+T + +RD LWL  YPL+   +  YF+ S FYD  CNNEQL+M+    LDLS L  M G
Sbjct: 65  DLTQVMWRDPLWLQMYPLNPQTILQYFSYSQFYDKNCNNEQLKMQR---LDLSALKNMDG 124

Query: 91  IEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCSVFAARVSRALYY 150
           +EY L + +EP  F+  KQ R  P  V     YY+++G+IYQAP+L  VF +RVS+++ +
Sbjct: 125 LEYELIKFVEPSFFLIAKQTRISPTDVLINTLYYVINGNIYQAPELHVVFKSRVSQSISH 184

Query: 151 ISKAFTTASSKLE---KIGY---VDSENESEEVK-PAKETINFKEVKRVDHILASLQRKL 210
           +S+AF + SS +      GY   +D  N+ E+ K  A      ++ KR+D ++ SL  K 
Sbjct: 185 LSEAFNSISSIVNWDIVNGYSLNLDPSNQQEKSKLAAYSRKQIEDTKRLDQLINSLFIKF 244

Query: 211 PPAPPPPPFPEGYAPAATAETE 226
           P    P   P+      T + +
Sbjct: 245 PAINRPVENPQQMGGGITPQQQ 263

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BLAST of CSPI03G23680 vs. Swiss-Prot
Match: MED6_MOUSE (Mediator of RNA polymerase II transcription subunit 6 OS=Mus musculus GN=Med6 PE=1 SV=2)

HSP 1 Score: 111.7 bits (278), Expect = 1.2e-23
Identity = 87/241 (36.10%), Postives = 123/241 (51.04%), Query Frame = 1


Query: 31  DMTGICFRDQLWLNTYPLDRNLVFDYFA--LSPFYDWTCNNEQLRMRSIHPLDLSQLSKM 90
           ++ GI + D  W+    L+   V DYF+   +PFYD TCNNE ++M+    L L  L++M
Sbjct: 9   NLLGISWVDSSWIPI--LNSGSVLDYFSERSNPFYDRTCNNEVVKMQR---LTLEHLNQM 68

Query: 91  TGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCSVFAARVSRAL 150
            GIEY+L    EP LF+ RKQ+R  P +V P+  YYI+ G IYQAP L SV  +RV  A+
Sbjct: 69  VGIEYILLHAQEPILFIIRKQQRQSPAQVIPLADYYIIAGVIYQAPDLGSVINSRVLTAV 128

Query: 151 YYISKAFTTASSKLE---KIGY---VDSENESEEVKP----AKETINFKEVKRVDHILAS 210
           + I  AF  A S        GY        E E+VKP     +E  +  + +RVD +L  
Sbjct: 129 HGIQSAFDEAMSYCRYHPSKGYWWHFKDHEEQEKVKPKAKRKEEPSSIFQRQRVDALLID 188

Query: 211 LQRKLPPAPPPPPFPEGYAPAATAETEKGPENQQGESQQPSADPIIDQ------GPAKRM 254
           L++K PP        E   P   A+ E  P  +  +S++  +   I Q       P KRM
Sbjct: 189 LRQKFPPRFVQQKSGEKPVPVDQAKKEAEPLPETVKSEEKESTKNIQQTVSTKGPPEKRM 244

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BLAST of CSPI03G23680 vs. Swiss-Prot
Match: MED6_ANOGA (Mediator of RNA polymerase II transcription subunit 6 OS=Anopheles gambiae GN=MED6 PE=3 SV=3)

HSP 1 Score: 109.0 bits (271), Expect = 7.9e-23
Identity = 82/235 (34.89%), Postives = 118/235 (50.21%), Query Frame = 1


Query: 35  ICFRDQLWLNTYPLDRNLVFDYFA--LSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIE 94
           I + D  W+    L+   V DYF+   +PFYD TCNNE +RM+      L  L+ MTG+E
Sbjct: 19  ISWHDSNWIPV--LNPGNVMDYFSEKSNPFYDRTCNNEIVRMQR---QSLELLNNMTGVE 78

Query: 95  YMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCSVFAARVSRALYYIS 154
           Y+   V +P L+V RKQ R  P + TPM  YYI+ G++YQAP L SVF +R+   ++++ 
Sbjct: 79  YIPLHVQDPILYVIRKQHRHSPTEATPMADYYIIAGTVYQAPDLASVFNSRILSTVHHLQ 138

Query: 155 KAFTTASS--------------KLEKIGYVDSENESEEVKPAK-ETINFKEVKRVDHILA 214
            AF  ASS                 K     ++ ++++  P K E  +  + +RVD +L 
Sbjct: 139 TAFDEASSYSRYHPSKGYSWDFSSNKAIAEKTKTQTKKEAPVKEEPSSIFQRQRVDMLLG 198

Query: 215 SLQRKLP-PAPPPPPFPEGYAPAATAETEKGPENQQGESQQPSAD-PIIDQGPAK 251
            L RK P P P     P G  P+ TA          G+S    AD  +I Q P +
Sbjct: 199 DLLRKFPLPLPQMTNNPTGGNPSDTANASNNHGGAAGDSDHVGADATLIKQEPTE 248

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BLAST of CSPI03G23680 vs. Swiss-Prot
Match: MED6_BOVIN (Mediator of RNA polymerase II transcription subunit 6 OS=Bos taurus GN=MED6 PE=2 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 2.3e-22
Identity = 83/241 (34.44%), Postives = 121/241 (50.21%), Query Frame = 1


Query: 31  DMTGICFRDQLWLNTYPLDRNLVFDYFA--LSPFYDWTCNNEQLRMRSIHPLDLSQLSKM 90
           ++ GI + D  W+    L+   V DYF+   +PFYD TCNNE ++M+    L L  L++M
Sbjct: 9   NLLGISWVDSSWIPI--LNSGSVLDYFSERSNPFYDRTCNNEVVKMQR---LTLEHLNQM 68

Query: 91  TGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCSVFAARVSRAL 150
            G+EY+L    EP LF+ RKQ+R  P +V P+  YYI+ G IYQAP L SV  +RV  A+
Sbjct: 69  VGVEYILLHAQEPILFIIRKQQRQSPTQVIPLADYYIIAGVIYQAPDLGSVINSRVLTAV 128

Query: 151 YYISKAFTTASSKLE---KIGY---VDSENESEEVKP----AKETINFKEVKRVDHILAS 210
           + I  AF  A S        GY        E ++VKP     +E  +  + +RVD +L  
Sbjct: 129 HGIQSAFDEAMSYCRYHPSKGYWWHFKDHEEQDKVKPKVKRKEEPSSIFQRQRVDALLLD 188

Query: 211 LQRKLPPAPPPPPFPEGYAPAATAETEKGPENQQGESQQPSADPIIDQ------GPAKRM 254
           L++K PP        E   P    + E  P  +  +S++      + Q       P KRM
Sbjct: 189 LRQKFPPKFVQQKSGEKPVPVDQTKKEAEPLPETVKSEEKETAKNVQQTVGTKGPPEKRM 244

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BLAST of CSPI03G23680 vs. TrEMBL
Match: A0A0A0L8C2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G434940 PE=4 SV=1)

HSP 1 Score: 516.5 bits (1329), Expect = 1.8e-143
Identity = 257/257 (100.00%), Postives = 257/257 (100.00%), Query Frame = 1


Query: 1   MATPPPPTAPPGTGNFEGGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALS 60
           MATPPPPTAPPGTGNFEGGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALS
Sbjct: 1   MATPPPPTAPPGTGNFEGGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALS 60

Query: 61  PFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPM 120
           PFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPM
Sbjct: 61  PFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPM 120

Query: 121 LTYYILDGSIYQAPQLCSVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPA 180
           LTYYILDGSIYQAPQLCSVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPA
Sbjct: 121 LTYYILDGSIYQAPQLCSVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPA 180

Query: 181 KETINFKEVKRVDHILASLQRKLPPAPPPPPFPEGYAPAATAETEKGPENQQGESQQPSA 240
           KETINFKEVKRVDHILASLQRKLPPAPPPPPFPEGYAPAATAETEKGPENQQGESQQPSA
Sbjct: 181 KETINFKEVKRVDHILASLQRKLPPAPPPPPFPEGYAPAATAETEKGPENQQGESQQPSA 240

Query: 241 DPIIDQGPAKRMKFSSV 258
           DPIIDQGPAKRMKFSSV
Sbjct: 241 DPIIDQGPAKRMKFSSV 257

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BLAST of CSPI03G23680 vs. TrEMBL
Match: A0A061GC41_THECC (RNA polymerase transcriptional regulation mediator-related isoform 1 OS=Theobroma cacao GN=TCM_028940 PE=4 SV=1)

HSP 1 Score: 416.8 bits (1070), Expect = 2.0e-113
Identity = 217/259 (83.78%), Postives = 229/259 (88.42%), Query Frame = 1


Query: 1   MATPP--PPTAPPGTGNFEGGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFA 60
           MATPP  PP A    GNFE  P P   QPPGTDMTGICFRDQLWLNTYPLDRNL+FDYFA
Sbjct: 1   MATPPVAPPQAA-AAGNFEAPP-PLPMQPPGTDMTGICFRDQLWLNTYPLDRNLIFDYFA 60

Query: 61  LSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVT 120
           LSPFYDWTCNNEQLRM SIHPLD+SQLSKMTG+EYML+EVMEP+LFV RKQKRDGPEKVT
Sbjct: 61  LSPFYDWTCNNEQLRMHSIHPLDISQLSKMTGVEYMLSEVMEPNLFVIRKQKRDGPEKVT 120

Query: 121 PMLTYYILDGSIYQAPQLCSVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESE--E 180
           PML YYILDGSIYQAPQLC+VFAARV RALYYISKAFTTA+SKLEKIGYVD+ENESE  E
Sbjct: 121 PMLAYYILDGSIYQAPQLCNVFAARVGRALYYISKAFTTAASKLEKIGYVDTENESETFE 180

Query: 181 VKPAKETINFKEVKRVDHILASLQRKLPPAPPPPPFPEGYAPAATAETEKGPENQQG-ES 240
            K  KETI+FKEVKRVDHILASLQRKLPPAPPPPPFPEG+ P ATAE EK PENQQ  E+
Sbjct: 181 SKGGKETIDFKEVKRVDHILASLQRKLPPAPPPPPFPEGFIPLATAEAEKDPENQQAVET 240

Query: 241 QQPSADPIIDQGPAKRMKF 255
           Q P+ DPIIDQGPAKRMKF
Sbjct: 241 QPPAIDPIIDQGPAKRMKF 257

[Close]

BLAST of CSPI03G23680 vs. TrEMBL
Match: M5X0D0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010369mg PE=4 SV=1)

HSP 1 Score: 415.2 bits (1066), Expect = 5.7e-113
Identity = 213/257 (82.88%), Postives = 224/257 (87.16%), Query Frame = 1


Query: 1   MATPPPPTAPPGTGNFEGGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALS 60
           MATPP   APP   + EG P P A QPPGTDMTGICF+DQLWLN+YPLDRNLVFDYFA+S
Sbjct: 1   MATPP--MAPP---SMEGTPPPMAVQPPGTDMTGICFKDQLWLNSYPLDRNLVFDYFAIS 60

Query: 61  PFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPM 120
           PFYDWTCNNEQLR RSIHPLD S LSKMTG EY LNEVMEPHLFVFRKQKRDGPEKVTPM
Sbjct: 61  PFYDWTCNNEQLRQRSIHPLDPSHLSKMTGTEYSLNEVMEPHLFVFRKQKRDGPEKVTPM 120

Query: 121 LTYYILDGSIYQAPQLCSVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESE--EVK 180
           LTYY+LDG+IYQAPQLC+VFAAR+ RALYYISKAFTTA+SKLEKIGYVDSENE+   E K
Sbjct: 121 LTYYVLDGTIYQAPQLCNVFAARIGRALYYISKAFTTAASKLEKIGYVDSENETAAFESK 180

Query: 181 PAKETINFKEVKRVDHILASLQRKLPPAPPPPPFPEGYAPAATAETEKGPENQQ-GESQQ 240
             KETI+FKEVKRVDHIL SLQRKLPPAPPPPPFPEGY PA TAE E GPE QQ GE QQ
Sbjct: 181 VTKETIDFKEVKRVDHILQSLQRKLPPAPPPPPFPEGYVPAPTAEAENGPETQQAGEPQQ 240

Query: 241 PSADPIIDQGPAKRMKF 255
           P  DPIIDQGPAKRMKF
Sbjct: 241 PQMDPIIDQGPAKRMKF 252

[Close]

BLAST of CSPI03G23680 vs. TrEMBL
Match: A0A0D2MG99_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G261900 PE=4 SV=1)

HSP 1 Score: 407.5 bits (1046), Expect = 1.2e-110
Identity = 213/257 (82.88%), Postives = 222/257 (86.38%), Query Frame = 1


Query: 1   MATPPPPTAPPGTGNFEGGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALS 60
           MATPP        GNFE  P P   QPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALS
Sbjct: 1   MATPPVAAG----GNFEAPP-PPPMQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALS 60

Query: 61  PFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPM 120
           PFYDWTCNNEQLRMRSIHPLDLSQLSKMTG+EYML+EVMEPHLFV RKQKRD  EKVTPM
Sbjct: 61  PFYDWTCNNEQLRMRSIHPLDLSQLSKMTGMEYMLSEVMEPHLFVIRKQKRDSAEKVTPM 120

Query: 121 LTYYILDGSIYQAPQLCSVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKP- 180
           L YYILDGSIYQAPQLC+VFAARV RALYYISKAFTTA+SKLEKIGYVD+ENESE V+P 
Sbjct: 121 LAYYILDGSIYQAPQLCNVFAARVGRALYYISKAFTTAASKLEKIGYVDTENESETVEPK 180

Query: 181 -AKETINFKEVKRVDHILASLQRKLPPAPPPPPFPEGYAPAATAETEKGPENQQGESQQP 240
             KE IN KEVKRVDHILASLQRKLPPAP PPPFP+G+ P +TAE EK PENQQ    QP
Sbjct: 181 GGKEAINIKEVKRVDHILASLQRKLPPAPLPPPFPDGFVPPSTAEAEKDPENQQTAEPQP 240

Query: 241 SA-DPIIDQGPAKRMKF 255
           SA DPIIDQGPAKRMKF
Sbjct: 241 SAVDPIIDQGPAKRMKF 252

[Close]

BLAST of CSPI03G23680 vs. TrEMBL
Match: I1KV00_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_08G199200 PE=4 SV=1)

HSP 1 Score: 404.8 bits (1039), Expect = 7.7e-110
Identity = 203/247 (82.19%), Postives = 218/247 (88.26%), Query Frame = 1


Query: 11  PGTGNFEGGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNE 70
           PG    EGG    APQPPGTDMTGICFRDQLWLN++PLDRNLVFDYFALSPFYDWTCNNE
Sbjct: 5   PGNQMLEGGG--GAPQPPGTDMTGICFRDQLWLNSFPLDRNLVFDYFALSPFYDWTCNNE 64

Query: 71  QLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYYILDGSI 130
           QLRMRS+HPLD+SQLSKMTG EYML+EVMEPHLFV RKQKRD P+KVTPML YY+LDGSI
Sbjct: 65  QLRMRSVHPLDISQLSKMTGTEYMLSEVMEPHLFVIRKQKRDSPDKVTPMLAYYVLDGSI 124

Query: 131 YQAPQLCSVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESE--EVKPAKETINFKE 190
           YQAPQLC+VFAAR+ RALYYI KAFTTA+SKLEKIGY DSENE+   E K AKETI+ KE
Sbjct: 125 YQAPQLCNVFAARIGRALYYIQKAFTTAASKLEKIGYADSENETALLESKTAKETIDIKE 184

Query: 191 VKRVDHILASLQRKLPPAPPPPPFPEGYAPAATAETEKGPENQQ-GESQQPSADPIIDQG 250
           VKRVDHILASLQRKLPPAPPPPPFPEGY P  TAETEKG E Q+  E+Q P+ADPIIDQG
Sbjct: 185 VKRVDHILASLQRKLPPAPPPPPFPEGYVPPPTAETEKGTETQEAAETQAPTADPIIDQG 244

Query: 251 PAKRMKF 255
           PAKRMKF
Sbjct: 245 PAKRMKF 249

[Close]

BLAST of CSPI03G23680 vs. TAIR10
Match: AT3G21350.2 (AT3G21350.2 RNA polymerase transcriptional regulation mediator-related)

HSP 1 Score: 308.9 bits (790), Expect = 2.9e-84
Identity = 177/290 (61.03%), Postives = 193/290 (66.55%), Query Frame = 1


Query: 8   TAPPGTGNFEGGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTC 67
           TA    GN     +P   QPPGTDMTGI FRDQLW+N+YPLDRN +FDYFALSPFYD TC
Sbjct: 10  TADTFNGN-AADQIPPPLQPPGTDMTGISFRDQLWINSYPLDRNYIFDYFALSPFYDTTC 69

Query: 68  NNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYYILD 127
           NNE LR RSIHPLDLS LSKMTG+EYML +  EP+LFVFRKQKRDGPEKVTPMLTYYILD
Sbjct: 70  NNEILRRRSIHPLDLSHLSKMTGLEYMLTDATEPNLFVFRKQKRDGPEKVTPMLTYYILD 129

Query: 128 GSIYQAPQLCSVFAARVSRALYYISKAFTTASSKLEKI---------GYVDSEN------ 187
           GSIYQAPQLCSVFAARVSR +Y ISKAFT A+SKLE I           V S +      
Sbjct: 130 GSIYQAPQLCSVFAARVSRTIYNISKAFTDAASKLETIRQDLQVCLVAIVLSLSVNLGSY 189

Query: 188 ---------ESEEV-------------------KPAKETINFKEVKRVDHILASLQRKLP 247
                      E+V                   KPA ET++ KE+KRVD IL SL RKL 
Sbjct: 190 FLLIFKLMANGEQVYGFNKFLFDTENQNEPAESKPASETVDLKEMKRVDVILTSLYRKLA 249

Query: 248 PAPPPPPFPEGYAPAATAETEKGPENQQGESQQPSADPIIDQGPAKRMKF 255
           P PPPPPFPEGY        ++    Q GESQ P  DPIIDQGPAKRMKF
Sbjct: 250 PPPPPPPFPEGYVSQEALGEKEELGTQGGESQPPQVDPIIDQGPAKRMKF 298

[Close]

BLAST of CSPI03G23680 vs. NCBI nr
Match: gi|778681244|ref|XP_004149176.2| (PREDICTED: mediator of RNA polymerase II transcription subunit 6 isoform X1 [Cucumis sativus])

HSP 1 Score: 516.5 bits (1329), Expect = 2.6e-143
Identity = 257/257 (100.00%), Postives = 257/257 (100.00%), Query Frame = 1


Query: 1   MATPPPPTAPPGTGNFEGGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALS 60
           MATPPPPTAPPGTGNFEGGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALS
Sbjct: 1   MATPPPPTAPPGTGNFEGGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALS 60

Query: 61  PFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPM 120
           PFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPM
Sbjct: 61  PFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPM 120

Query: 121 LTYYILDGSIYQAPQLCSVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPA 180
           LTYYILDGSIYQAPQLCSVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPA
Sbjct: 121 LTYYILDGSIYQAPQLCSVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPA 180

Query: 181 KETINFKEVKRVDHILASLQRKLPPAPPPPPFPEGYAPAATAETEKGPENQQGESQQPSA 240
           KETINFKEVKRVDHILASLQRKLPPAPPPPPFPEGYAPAATAETEKGPENQQGESQQPSA
Sbjct: 181 KETINFKEVKRVDHILASLQRKLPPAPPPPPFPEGYAPAATAETEKGPENQQGESQQPSA 240

Query: 241 DPIIDQGPAKRMKFSSV 258
           DPIIDQGPAKRMKFSSV
Sbjct: 241 DPIIDQGPAKRMKFSSV 257

[Close]

BLAST of CSPI03G23680 vs. NCBI nr
Match: gi|659093511|ref|XP_008447572.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 6 isoform X1 [Cucumis melo])

HSP 1 Score: 502.3 bits (1292), Expect = 5.1e-139
Identity = 250/255 (98.04%), Postives = 253/255 (99.22%), Query Frame = 1


Query: 1   MATPPPPT-APPGTGNFEGGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFAL 60
           MATPPPPT APPGTGNFEGGP+PAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFAL
Sbjct: 1   MATPPPPTTAPPGTGNFEGGPMPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFAL 60

Query: 61  SPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTP 120
           SPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTP
Sbjct: 61  SPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTP 120

Query: 121 MLTYYILDGSIYQAPQLCSVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKP 180
           MLTYYILDGSIYQAPQLC+VFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKP
Sbjct: 121 MLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKP 180

Query: 181 AKETINFKEVKRVDHILASLQRKLPPAPPPPPFPEGYAPAATAETEKGPENQQGESQQPS 240
           AKETINFKEVKRVDHILASLQRKLPPAPPPPPFPEGYAPA TA+TEKGPENQQGESQQPS
Sbjct: 181 AKETINFKEVKRVDHILASLQRKLPPAPPPPPFPEGYAPAPTADTEKGPENQQGESQQPS 240

Query: 241 ADPIIDQGPAKRMKF 255
           ADPIIDQGPAKRMKF
Sbjct: 241 ADPIIDQGPAKRMKF 255

[Close]

BLAST of CSPI03G23680 vs. NCBI nr
Match: gi|778681247|ref|XP_011651474.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 6 isoform X2 [Cucumis sativus])

HSP 1 Score: 461.5 bits (1186), Expect = 1.0e-126
Identity = 236/257 (91.83%), Postives = 236/257 (91.83%), Query Frame = 1


Query: 1   MATPPPPTAPPGTGNFEGGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALS 60
           MATPPPPTAPPGTGNFEGGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALS
Sbjct: 1   MATPPPPTAPPGTGNFEGGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALS 60

Query: 61  PFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPM 120
           PFYDWTCNNEQLRMRSIHPLDLSQLSK                     QKRDGPEKVTPM
Sbjct: 61  PFYDWTCNNEQLRMRSIHPLDLSQLSK---------------------QKRDGPEKVTPM 120

Query: 121 LTYYILDGSIYQAPQLCSVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPA 180
           LTYYILDGSIYQAPQLCSVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPA
Sbjct: 121 LTYYILDGSIYQAPQLCSVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPA 180

Query: 181 KETINFKEVKRVDHILASLQRKLPPAPPPPPFPEGYAPAATAETEKGPENQQGESQQPSA 240
           KETINFKEVKRVDHILASLQRKLPPAPPPPPFPEGYAPAATAETEKGPENQQGESQQPSA
Sbjct: 181 KETINFKEVKRVDHILASLQRKLPPAPPPPPFPEGYAPAATAETEKGPENQQGESQQPSA 236

Query: 241 DPIIDQGPAKRMKFSSV 258
           DPIIDQGPAKRMKFSSV
Sbjct: 241 DPIIDQGPAKRMKFSSV 236

[Close]

BLAST of CSPI03G23680 vs. NCBI nr
Match: gi|659093513|ref|XP_008447573.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 6 isoform X2 [Cucumis melo])

HSP 1 Score: 447.2 bits (1149), Expect = 1.9e-122
Identity = 229/255 (89.80%), Postives = 232/255 (90.98%), Query Frame = 1


Query: 1   MATPPPPT-APPGTGNFEGGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFAL 60
           MATPPPPT APPGTGNFEGGP+PAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFAL
Sbjct: 1   MATPPPPTTAPPGTGNFEGGPMPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFAL 60

Query: 61  SPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTP 120
           SPFYDWTCNNEQLRMRSIHPLDLSQLSK                     QKRDGPEKVTP
Sbjct: 61  SPFYDWTCNNEQLRMRSIHPLDLSQLSK---------------------QKRDGPEKVTP 120

Query: 121 MLTYYILDGSIYQAPQLCSVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKP 180
           MLTYYILDGSIYQAPQLC+VFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKP
Sbjct: 121 MLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKP 180

Query: 181 AKETINFKEVKRVDHILASLQRKLPPAPPPPPFPEGYAPAATAETEKGPENQQGESQQPS 240
           AKETINFKEVKRVDHILASLQRKLPPAPPPPPFPEGYAPA TA+TEKGPENQQGESQQPS
Sbjct: 181 AKETINFKEVKRVDHILASLQRKLPPAPPPPPFPEGYAPAPTADTEKGPENQQGESQQPS 234

Query: 241 ADPIIDQGPAKRMKF 255
           ADPIIDQGPAKRMKF
Sbjct: 241 ADPIIDQGPAKRMKF 234

[Close]

BLAST of CSPI03G23680 vs. NCBI nr
Match: gi|590619737|ref|XP_007024366.1| (RNA polymerase transcriptional regulation mediator-related isoform 1 [Theobroma cacao])

HSP 1 Score: 416.8 bits (1070), Expect = 2.8e-113
Identity = 217/259 (83.78%), Postives = 229/259 (88.42%), Query Frame = 1


Query: 1   MATPP--PPTAPPGTGNFEGGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFA 60
           MATPP  PP A    GNFE  P P   QPPGTDMTGICFRDQLWLNTYPLDRNL+FDYFA
Sbjct: 1   MATPPVAPPQAA-AAGNFEAPP-PLPMQPPGTDMTGICFRDQLWLNTYPLDRNLIFDYFA 60

Query: 61  LSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVT 120
           LSPFYDWTCNNEQLRM SIHPLD+SQLSKMTG+EYML+EVMEP+LFV RKQKRDGPEKVT
Sbjct: 61  LSPFYDWTCNNEQLRMHSIHPLDISQLSKMTGVEYMLSEVMEPNLFVIRKQKRDGPEKVT 120

Query: 121 PMLTYYILDGSIYQAPQLCSVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESE--E 180
           PML YYILDGSIYQAPQLC+VFAARV RALYYISKAFTTA+SKLEKIGYVD+ENESE  E
Sbjct: 121 PMLAYYILDGSIYQAPQLCNVFAARVGRALYYISKAFTTAASKLEKIGYVDTENESETFE 180

Query: 181 VKPAKETINFKEVKRVDHILASLQRKLPPAPPPPPFPEGYAPAATAETEKGPENQQG-ES 240
            K  KETI+FKEVKRVDHILASLQRKLPPAPPPPPFPEG+ P ATAE EK PENQQ  E+
Sbjct: 181 SKGGKETIDFKEVKRVDHILASLQRKLPPAPPPPPFPEGFIPLATAEAEKDPENQQAVET 240

Query: 241 QQPSADPIIDQGPAKRMKF 255
           Q P+ DPIIDQGPAKRMKF
Sbjct: 241 QPPAIDPIIDQGPAKRMKF 257

The following BLAST results are available for this feature:

BLAST of CSPI03G23680 vs. Swiss-Prot


Match Name	E-value	Identity	Description
MED6_ARATH	5.2e-83	61.03	Mediator of RNA polymerase II transcription subunit 6 OS=Arabidopsis thaliana GN...	[more]
MED6_DICDI	8.1e-28	38.12	Putative mediator of RNA polymerase II transcription subunit 6 OS=Dictyostelium ...	[more]
MED6_MOUSE	1.2e-23	36.10	Mediator of RNA polymerase II transcription subunit 6 OS=Mus musculus GN=Med6 PE...	[more]
MED6_ANOGA	7.9e-23	34.89	Mediator of RNA polymerase II transcription subunit 6 OS=Anopheles gambiae GN=ME...	[more]
MED6_BOVIN	2.3e-22	34.44	Mediator of RNA polymerase II transcription subunit 6 OS=Bos taurus GN=MED6 PE=2...	[more]

BLAST of CSPI03G23680 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L8C2_CUCSA	1.8e-143	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G434940 PE=4 SV=1	[more]
A0A061GC41_THECC	2.0e-113	83.78	RNA polymerase transcriptional regulation mediator-related isoform 1 OS=Theobrom...	[more]
M5X0D0_PRUPE	5.7e-113	82.88	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010369mg PE=4 SV=1	[more]
A0A0D2MG99_GOSRA	1.2e-110	82.88	Uncharacterized protein OS=Gossypium raimondii GN=B456_002G261900 PE=4 SV=1	[more]
I1KV00_SOYBN	7.7e-110	82.19	Uncharacterized protein OS=Glycine max GN=GLYMA_08G199200 PE=4 SV=1	[more]

BLAST of CSPI03G23680 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G21350.2	2.9e-84	61.03	RNA polymerase transcriptional regulation mediator-related	[more]

BLAST of CSPI03G23680 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778681244\|ref\|XP_004149176.2\|	2.6e-143	100.00	PREDICTED: mediator of RNA polymerase II transcription subunit 6 isoform X1 [Cuc...	[more]
gi\|659093511\|ref\|XP_008447572.1\|	5.1e-139	98.04	PREDICTED: mediator of RNA polymerase II transcription subunit 6 isoform X1 [Cuc...	[more]
gi\|778681247\|ref\|XP_011651474.1\|	1.0e-126	91.83	PREDICTED: mediator of RNA polymerase II transcription subunit 6 isoform X2 [Cuc...	[more]
gi\|659093513\|ref\|XP_008447573.1\|	1.9e-122	89.80	PREDICTED: mediator of RNA polymerase II transcription subunit 6 isoform X2 [Cuc...	[more]
gi\|590619737\|ref\|XP_007024366.1\|	2.8e-113	83.78	RNA polymerase transcriptional regulation mediator-related isoform 1 [Theobroma ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007018	Mediator_Med6
IPR016820	Mediator_Med6_met/pln

Vocabulary: **Molecular Function**
Term	Definition
GO:0001104	RNA polymerase II transcription cofactor activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006357	regulation of transcription from RNA polymerase II promoter

Vocabulary: **Cellular Component**
Term	Definition
GO:0016592	mediator complex

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006357	regulation of transcription from RNA polymerase II promoter
cellular_component	GO:0016592	mediator complex
molecular_function	GO:0001104	RNA polymerase II transcription cofactor activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G23680.1	CSPI03G23680.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007018	Mediator complex, subunit Med6	PANTHER	PTHR13104	MED-6-RELATED	coord: 23..256 score: 3.1E
IPR007018	Mediator complex, subunit Med6	PFAM	PF04934	Med6	coord: 35..160 score: 2.5
IPR016820	Mediator complex, subunit Med6, metazoa/plant	PIR	PIRSF023869	MED6_meta/plant	coord: 20..254 score: 1.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI03G23680	Cla012638	Watermelon (97103) v1	cpiwmB217
CSPI03G23680	Csa3G434940	Cucumber (Chinese Long) v2	cpicuB120
CSPI03G23680	MELO3C013015	Melon (DHL92) v3.5.1	cpimeB219
CSPI03G23680	ClCG07G013490	Watermelon (Charleston Gray)	cpiwcgB265
CSPI03G23680	Lsi07G005380	Bottle gourd (USVL1VR-Ls)	cpilsiB235
CSPI03G23680	MELO3C013015.2	Melon (DHL92) v3.6.1	cpimedB212
CSPI03G23680	CsaV3_3G023410	Cucumber (Chinese Long) v3	cpicucB144
CSPI03G23680	Cla97C07G140280	Watermelon (97103) v2	cpiwmbB251
CSPI03G23680	Bhi01G002598	Wax gourd	cpiwgoB274
CSPI03G23680	Cucsa.021650	Cucumber (Gy14) v1	cgycpiB477
CSPI03G23680	CmaCh01G000840	Cucurbita maxima (Rimu)	cmacpiB451
CSPI03G23680	CmoCh01G000830	Cucurbita moschata (Rifu)	cmocpiB440
CSPI03G23680	Cp4.1LG02g14420	Cucurbita pepo (Zucchini)	cpecpiB563
CSPI03G23680	CsGy3G022610	Cucumber (Gy14) v2	cgybcpiB110

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI03G23680	Watermelon (97103) v1	cpiwmB182