CsaV3_3G021940 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G021940
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
Descriptionkinetochore protein NDC80 homolog
Locationchr3 : 19049812 .. 19053122 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAAGAGAATTGCAGGCTGTGGAGAGGGACATCGGTGATGCCGAAGTCTCGAGGAACTTGTGGGAGGAGAAGTCACGGGATCTTGATGCAACTCTAGGAAATACATTTAAGGGGCTTGAGGCCATTGCAATGGAATGTAACCAGGCGATGAGAAGGTTGCTCCTCTTTCACTTTTCTTTATTTATTGTTATCATCATTTAGTTCTTGTTTTCAAATATCTCAAACTTAATACTTTCATCACGAAGACCAAGTTTAACTTTATTTCCACTACTTCTAGTTCGTTCTTTTGAAATCATTCTTGACAAGAATCTTATCAATTGAGAAGAAGTTTTAAATGTATTGATTTATTTGGGGTATCTGCTATCAAGTTTCAACCTTTCCTTTTAATGTTTTCAGCCGACTGCACTACGAGAACATTTTTAAAATCTAATGTTCATAGCTATGGTATATCACTTCCATAGTCTTCTACATTTTCAGGGGAAAGTATGTCGAGCATTGTAAAGATACTAGAAGTATTGGTCATCCCAAATCATACTTATCATTTATATTGATAAATTGAAATTTTAAAACATACTATTGGTAAAATTGAACTACTGTGAAGTTTGTTGAATCTTTCTACATTCACGATTCAAATGTTTTCATCTAGTTAATTAAGGTATTGTATCCAACATTTACTTAATCTGATTTTTTTCGAATTATAGTTATTGCTTTGCAAGAATGTAGTTTATTTTTGTAGTTTCTTGATTTGATTGTTACGTTAGTAATGCATTTCTTCTCTTATTTTATTTTTGTGAATTTCACATTTTATGGTACTTATCCATCTCAAATGATACCTATGAGTATAAAGGGTTATTCAATAGCCCCTTATACAACTTCTATTCGTTGTTATTAGATTAACTACTTTGTTAATACAACTTCTATTCGTTGTTATTAGATTAAAGCTCGATAGTTGTCATCAGTATGTTCTGAATGCAAAGGGGTCGACACCAGCTGATATGATGGGGATTGACTATAAGACAACCATTAAGCCTGCACTTGATTCCTTTGCAGAGGACATAAGGAGAAGTTCCATGATGAAGTTGGAAGAGTTGATTTCTCTCCGGCAGCAATCAAATGAAAATACTGCTAAAATTGAGTCTAAACGCAGTCACATGGCTTCTCTTCAACCCCATATCAATGAAGTAAGGACATGAAAAAATAAATGAGGGGTTTGCATGGCTGGTAGGAATTAACTCGTACAAGATGTTTTTCTGATCGTTTAAATGGTTTCTTTCTTCCAGCATGAAACACAACTAATCTCCTTAAAAGATGAAATGCGAGATTATATTTTAAGATGCTCCACGGAATCCAAGAAAATGGTGGAGGATGTTCAACAAGAAGCTCATAACTTAGATCTCGTGGAAGGAGAAGCAGAGGAGAGTTTGAAGGTATTAATGCTTTACCACAATTATTCCCTTTATTTATTATTGTTATTATTATTATTATTTTTGGGTGGGGGGAGTTGACCCCTTTTTTCCCTTTCTTTTGGTAACCCTGATGATCAGTTGGCTTTGCAGAGGACTATTATTTCTGTGGGTAAATAACACTGTTAGCCCTTGAATTTCAAAATTAGTTTCTATTTGATCCCTTACTGATATTTTTAGTCCTATGCCTTTAAGAAATGGTACTTAACTTAGTTGACTATTTGATTGATGATTTGGCAGGTAATATAATTTTTCAAATGAGTTGGAATTGTTTTAGCTTATGTGACATTTCTCTTTATTTCCCTACCCTTCTGACATTTGCTTCTTCTCCTTTTATCTGAGTGCAAAAAATTCATTCACCTTCTTTCATTAAGAAGTACACTTTGTCTTTGCCCATACCTCTCACTCTTTCTTCTCCCAAAGCTTTCAACCAACAACACTTCATATAAGAAAATAAGTTATAAAACTCCAAACATTACACGCCTAAGATTTGTGCGAGTGAGGAAAGGATACATGCACACGAGTGTGACTTTTAAGAGTTGAAGAATCCATGTGCGAGAGAGACATACAAAGTTGAGATAAATTTAAGAGTTGAGTGTGATGGCGATAAATGAGGAAGTCAAGTGTGACTTTTTGTATTCTGTCAATGCAAGTTGTGAATGAGAGAAGGATTTTGAGTTTAGGTTTTAAGAAGAGGATTGAGGAATAACTATTACTCATATGGAATGTTATCTGCCAATTCTTTTGAGCTCGCCACTGCTGCCCCTTTTGTACCGATGAGATACATTCACCTTTGATTGGCTCCATGGTCTCGTACTTATCCTTCCATATAAGATGTTATCCCCTTTGAAATCAATCCAATGCTAGCATAATAAGAAGGGTAGGGAAAGAAAAGAGAAAATCATGTCTACAAATCTAGTCAGCAAGTTAACTGTCGAATCATTATTTAGATAGTTAACTAACAGTCCAAGCCCAAGGATCTTCTAGAATAATTTCTTGGAGTGATGGAACTAGAATGTAAGTTGTTGAACTTAAGGGACCAAACAAAATTCTATTCTCATATTTAGTGGCAATGAGAATAAAGATTGATTGATAACTTGAATCCCGTTAGAAGTTAGATAACCATTTGGTTTTTGGTCCTTGAGAACTAAATTTATAAACACAATTCTACCATCTCGATTTTTCATTTTGCTGTCTACTTTTTAAGAGTGTTTTAAAAAATTCAAGTCAAGTTTTGAAAACTGAAAAAAGTAGTTTCTAAAAAGTTATTTTTGTTTTCGGCATTTGGCTTGTACAAATGTTTATCTTGAAAGCATGAAAACTATGATTAAGAAATTGTAAAAAACCAAGTACAATTTATTAAAAACTAAAAACCAAATGCATGTTTGGAGTTCAAATTTCTTTCTAGATTTTGGAAGAACTCTAGATGGACTGTTAAATAATCTTTTGTTAACACAACCAAGCCAGTACGCATTGTACCATATCATCGTATCTTTTCTTACGCCTAAACTAGGAGAGAAATCACTTTAACGATATTAACTGTTACAAGACTTTCCACCACCTCAGTTTTGCTTAGTTAATTTCTAGTTGATGCTAGAATCTTCTCCTCTCTTATTATGATCTGTTGTTGGTTCTGTGAAGAATGCCAAATTGGCGCATCAGGAAGCAATAAAGCAAGAAGAAGAAGAAATTCATATGTGTGCTCGTGAACTACTTTCATGTCTTGACTCTCTCTCACAATATAAAGCAGTTGTTAGCTGCAAAATTTCAGATATGGAAAGCTGCCTCTCGAAGGCTGCTGCCGGTATCTCTGAGGCTTTCAAGATTTCTATGCCTGCAGTATAA

mRNA sequence

ATGAGAAGAGAATTGCAGGCTGTGGAGAGGGACATCGGTGATGCCGAAGTCTCGAGGAACTTGTGGGAGGAGAAGTCACGGGATCTTGATGCAACTCTAGGAAATACATTTAAGGGGCTTGAGGCCATTGCAATGGAATGTAACCAGGCGATGAGAAGATTAAAGCTCGATAGTTGTCATCAGTATGTTCTGAATGCAAAGGGGTCGACACCAGCTGATATGATGGGGATTGACTATAAGACAACCATTAAGCCTGCACTTGATTCCTTTGCAGAGGACATAAGGAGAAGTTCCATGATGAAGTTGGAAGAGTTGATTTCTCTCCGGCAGCAATCAAATGAAAATACTGCTAAAATTGAGTCTAAACGCAGTCACATGGCTTCTCTTCAACCCCATATCAATGAACATGAAACACAACTAATCTCCTTAAAAGATGAAATGCGAGATTATATTTTAAGATGCTCCACGGAATCCAAGAAAATGGTGGAGGATGTTCAACAAGAAGCTCATAACTTAGATCTCGTGGAAGGAGAAGCAGAGGAGAGTTTGAAGAATGCCAAATTGGCGCATCAGGAAGCAATAAAGCAAGAAGAAGAAGAAATTCATATGTGTGCTCGTGAACTACTTTCATGTCTTGACTCTCTCTCACAATATAAAGCAGTTGTTAGCTGCAAAATTTCAGATATGGAAAGCTGCCTCTCGAAGGCTGCTGCCGGTATCTCTGAGGCTTTCAAGATTTCTATGCCTGCAGTATAA

Coding sequence (CDS)

ATGAGAAGAGAATTGCAGGCTGTGGAGAGGGACATCGGTGATGCCGAAGTCTCGAGGAACTTGTGGGAGGAGAAGTCACGGGATCTTGATGCAACTCTAGGAAATACATTTAAGGGGCTTGAGGCCATTGCAATGGAATGTAACCAGGCGATGAGAAGATTAAAGCTCGATAGTTGTCATCAGTATGTTCTGAATGCAAAGGGGTCGACACCAGCTGATATGATGGGGATTGACTATAAGACAACCATTAAGCCTGCACTTGATTCCTTTGCAGAGGACATAAGGAGAAGTTCCATGATGAAGTTGGAAGAGTTGATTTCTCTCCGGCAGCAATCAAATGAAAATACTGCTAAAATTGAGTCTAAACGCAGTCACATGGCTTCTCTTCAACCCCATATCAATGAACATGAAACACAACTAATCTCCTTAAAAGATGAAATGCGAGATTATATTTTAAGATGCTCCACGGAATCCAAGAAAATGGTGGAGGATGTTCAACAAGAAGCTCATAACTTAGATCTCGTGGAAGGAGAAGCAGAGGAGAGTTTGAAGAATGCCAAATTGGCGCATCAGGAAGCAATAAAGCAAGAAGAAGAAGAAATTCATATGTGTGCTCGTGAACTACTTTCATGTCTTGACTCTCTCTCACAATATAAAGCAGTTGTTAGCTGCAAAATTTCAGATATGGAAAGCTGCCTCTCGAAGGCTGCTGCCGGTATCTCTGAGGCTTTCAAGATTTCTATGCCTGCAGTATAA

Protein sequence

MRRELQAVERDIGDAEVSRNLWEEKSRDLDATLGNTFKGLEAIAMECNQAMRRLKLDSCHQYVLNAKGSTPADMMGIDYKTTIKPALDSFAEDIRRSSMMKLEELISLRQQSNENTAKIESKRSHMASLQPHINEHETQLISLKDEMRDYILRCSTESKKMVEDVQQEAHNLDLVEGEAEESLKNAKLAHQEAIKQEEEEIHMCARELLSCLDSLSQYKAVVSCKISDMESCLSKAAAGISEAFKISMPAV
Homology
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BLAST of CsaV3_3G021940 vs. NCBI nr
Match: XP_011651417.1 (PREDICTED: uncharacterized protein LOC101211369 [Cucumis sativus] >XP_011651418.1 PREDICTED: uncharacterized protein LOC101211369 [Cucumis sativus] >XP_011651419.1 PREDICTED: uncharacterized protein LOC101211369 [Cucumis sativus] >XP_011651420.1 PREDICTED: uncharacterized protein LOC101211369 [Cucumis sativus])

HSP 1 Score: 471.5 bits (1212), Expect = 1.8e-129
Identity = 247/251 (98.41%), Postives = 250/251 (99.60%), Query Frame = 0 

Query: 1   MRRELQAVERDIGDAEVSRNLWEEKSRDLDATLGNTFKGLEAIAMECNQAMRRLKLDSCH 60
           MRRELQAVERDIGDAEVSRNLWEEKSRDLDATLGNTFKGLEAIAMECNQAMRRLKLDSCH
Sbjct: 1   MRRELQAVERDIGDAEVSRNLWEEKSRDLDATLGNTFKGLEAIAMECNQAMRRLKLDSCH 60

Query: 61  QYVLNAKGSTPADMMGIDYKTTIKPALDSFAEDIRRSSMMKLEELISLRQQSNENTAKIE 120
           QYVLNAKGSTPAD+MGIDYKTT+KPALDSFAEDIRRSSMMKLEELISLRQQSNENTAKIE
Sbjct: 61  QYVLNAKGSTPADVMGIDYKTTLKPALDSFAEDIRRSSMMKLEELISLRQQSNENTAKIE 120

Query: 121 SKRSHMASLQPHINEHETQLISLKDEMRDYILRCSTESKKMVEDVQQEAHNLDLVEGEAE 180
           SKRSHMASLQPHINEHETQLISLKDEMRDYILRCSTESKKMVEDVQQEAHNLDLVEGEAE
Sbjct: 121 SKRSHMASLQPHINEHETQLISLKDEMRDYILRCSTESKKMVEDVQQEAHNLDLVEGEAE 180

Query: 181 ESLKNAKLAHQEAIKQEEEEIHMCARELLSCLDSLSQYKAVVSCKISDMESCLSKAAAGI 240
           ESLKNAKLAHQEAIKQ EEEIHMCARELLSCLDS+SQYKAVVSCKISDMESCLSKAAAGI
Sbjct: 181 ESLKNAKLAHQEAIKQGEEEIHMCARELLSCLDSVSQYKAVVSCKISDMESCLSKAAAGI 240

Query: 241 SEAFKISMPAV 252
           SEAFKISMPAV
Sbjct: 241 SEAFKISMPAV 251

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BLAST of CsaV3_3G021940 vs. NCBI nr
Match: XP_004149971.2 (PREDICTED: kinetochore protein NDC80 homolog [Cucumis sativus])

HSP 1 Score: 448.0 bits (1151), Expect = 2.2e-122
Identity = 236/250 (94.40%), Postives = 242/250 (96.80%), Query Frame = 0 

Query: 1   MRRELQAVERDIGDAEVSRNLWEEKSRDLDATLGNTFKGLEAIAMECNQAMRRLKLDSCH 60
           MRRELQAVERDIGDAEVSRN WEEKS DLDATLGN FK LEAIAMECNQAMRRLKLDSCH
Sbjct: 315 MRRELQAVERDIGDAEVSRNSWEEKSWDLDATLGNKFKELEAIAMECNQAMRRLKLDSCH 374

Query: 61  QYVLNAKGSTPADMMGIDYKTTIKPALDSFAEDIRRSSMMKLEELISLRQQSNENTAKIE 120
           QYVLNAKGSTPAD+MGIDYKTT+KPALDSFAEDIRRSSMMKLEELISLRQQS+ENTAKIE
Sbjct: 375 QYVLNAKGSTPADVMGIDYKTTLKPALDSFAEDIRRSSMMKLEELISLRQQSSENTAKIE 434

Query: 121 SKRSHMASLQPHINEHETQLISLKDEMRDYILRCSTESKKMVEDVQQEAHNLDLVEGEAE 180
           SKR H+ASLQ H+NEHETQLISLKDEMRDYILRCSTESKKMVEDVQQEAHNLDLVEGEAE
Sbjct: 435 SKRDHIASLQSHVNEHETQLISLKDEMRDYILRCSTESKKMVEDVQQEAHNLDLVEGEAE 494

Query: 181 ESLKNAKLAHQEAIKQEEEEIHMCARELLSCLDSLSQYKAVVSCKISDMESCLSKAAAGI 240
           ESLKNAKLAHQEAIKQ EEEIHMCARELLSCLDS+SQYKAVVSCKISDMESCLSKAAAGI
Sbjct: 495 ESLKNAKLAHQEAIKQGEEEIHMCARELLSCLDSVSQYKAVVSCKISDMESCLSKAAAGI 554

Query: 241 SEAFKISMPA 251
           SEAFK SMPA
Sbjct: 555 SEAFKNSMPA 564

[Close]
BLAST of CsaV3_3G021940 vs. NCBI nr
Match: XP_008439248.1 (PREDICTED: kinetochore protein NDC80 homolog [Cucumis melo] >XP_008439249.1 PREDICTED: kinetochore protein NDC80 homolog [Cucumis melo])

HSP 1 Score: 436.8 bits (1122), Expect = 5.0e-119
Identity = 230/249 (92.37%), Postives = 240/249 (96.39%), Query Frame = 0 

Query: 1   MRRELQAVERDIGDAEVSRNLWEEKSRDLDATLGNTFKGLEAIAMECNQAMRRLKLDSCH 60
           MRRELQAVERDIGDAEVSRN WEEKS DLDATLGN FK LEAIAMECNQAMRRLKLDSCH
Sbjct: 315 MRRELQAVERDIGDAEVSRNSWEEKSWDLDATLGNKFKELEAIAMECNQAMRRLKLDSCH 374

Query: 61  QYVLNAKGSTPADMMGIDYKTTIKPALDSFAEDIRRSSMMKLEELISLRQQSNENTAKIE 120
           QYVLNAKGSTPAD+MGIDYK+T+KPALDSFAEDIRRSSMMKLEELISLRQQS+ENTAKI+
Sbjct: 375 QYVLNAKGSTPADVMGIDYKSTVKPALDSFAEDIRRSSMMKLEELISLRQQSSENTAKID 434

Query: 121 SKRSHMASLQPHINEHETQLISLKDEMRDYILRCSTESKKMVEDVQQEAHNLDLVEGEAE 180
           SKR+ +ASLQ HINEHET+LISLKDEMRDYILRCSTESKKMVED QQEAHNLDLVEGEAE
Sbjct: 435 SKRNQIASLQSHINEHETKLISLKDEMRDYILRCSTESKKMVEDFQQEAHNLDLVEGEAE 494

Query: 181 ESLKNAKLAHQEAIKQEEEEIHMCARELLSCLDSLSQYKAVVSCKISDMESCLSKAAAGI 240
           ESLKNAKLA+QEA KQEEEEIHMCARELLSCLDS+SQYKAVVSCKISDMESCLSKAAAGI
Sbjct: 495 ESLKNAKLANQEATKQEEEEIHMCARELLSCLDSVSQYKAVVSCKISDMESCLSKAAAGI 554

Query: 241 SEAFKISMP 250
           SEAFK SMP
Sbjct: 555 SEAFKNSMP 563

[Close]
BLAST of CsaV3_3G021940 vs. NCBI nr
Match: XP_022984383.1 (kinetochore protein NDC80 homolog [Cucurbita maxima])

HSP 1 Score: 367.9 bits (943), Expect = 2.8e-98
Identity = 194/250 (77.60%), Postives = 221/250 (88.40%), Query Frame = 0 

Query: 1   MRRELQAVERDIGDAEVSRNLWEEKSRDLDATLGNTFKGLEAIAMECNQAMRRLKLDSCH 60
           MRRELQAVERDIGDAEVSRN WEEK+ D+DAT+GN FK LEA+A ECNQAMRRLKLD+CH
Sbjct: 315 MRRELQAVERDIGDAEVSRNSWEEKTWDIDATVGNKFKELEAMARECNQAMRRLKLDNCH 374

Query: 61  QYVLNAKGSTPADMMGIDYKTTIKPALDSFAEDIRRSSMMKLEELISLRQQSNENTAKIE 120
           QY LNAKGSTPAD+MG+DYKTTIKPALDSFAEDI++SSM KLE+LISLRQQS+ENTAKIE
Sbjct: 375 QYFLNAKGSTPADVMGVDYKTTIKPALDSFAEDIKKSSMTKLEDLISLRQQSSENTAKIE 434

Query: 121 SKRSHMASLQPHINEHETQLISLKDEMRDYILRCSTESKKMVEDVQQEAHNLDLVEGEAE 180
           S+RSH+ SLQ HI E ETQ+ SLK+E+RDY LRCSTESKKMVEDVQ EAH++D+VE EA 
Sbjct: 435 SRRSHILSLQSHIEEAETQVNSLKNEIRDYTLRCSTESKKMVEDVQLEAHSIDVVEREAG 494

Query: 181 ESLKNAKLAHQEAIKQEEEEIHMCARELLSCLDSLSQYKAVVSCKISDMESCLSKAAAGI 240
           E LKNAKL H+EAIKQ EEEI +CAREL++C+DS+SQYK  V  KISDM S LSK A GI
Sbjct: 495 EILKNAKLKHEEAIKQGEEEILICARELVACVDSVSQYKEFVRSKISDMRSNLSKTAVGI 554

Query: 241 SEAFKISMPA 251
           SEA+K S+PA
Sbjct: 555 SEAYKNSLPA 564

[Close]
BLAST of CsaV3_3G021940 vs. NCBI nr
Match: XP_022923126.1 (kinetochore protein NDC80 homolog [Cucurbita moschata])

HSP 1 Score: 361.7 bits (927), Expect = 2.0e-96
Identity = 189/250 (75.60%), Postives = 221/250 (88.40%), Query Frame = 0 

Query: 1   MRRELQAVERDIGDAEVSRNLWEEKSRDLDATLGNTFKGLEAIAMECNQAMRRLKLDSCH 60
           MRRELQAVERDIGDAEVSRN WEEK+ D+DAT+GN FK LEA+A ECNQAMRRLKLD+CH
Sbjct: 315 MRRELQAVERDIGDAEVSRNSWEEKTWDIDATVGNKFKELEAMARECNQAMRRLKLDNCH 374

Query: 61  QYVLNAKGSTPADMMGIDYKTTIKPALDSFAEDIRRSSMMKLEELISLRQQSNENTAKIE 120
           QY LNAKGSTPAD+MG+DYKTTIKP+LDSFAEDI++SSM KLE+LISLRQQS+EN+AKIE
Sbjct: 375 QYFLNAKGSTPADVMGVDYKTTIKPSLDSFAEDIKKSSMTKLEDLISLRQQSSENSAKIE 434

Query: 121 SKRSHMASLQPHINEHETQLISLKDEMRDYILRCSTESKKMVEDVQQEAHNLDLVEGEAE 180
           S+RSH+ SLQ HI E ETQ+ SL++E+RDY LRCSTESKKMVED+Q EAH++D+VE EA 
Sbjct: 435 SRRSHILSLQSHIEEGETQVNSLRNEIRDYTLRCSTESKKMVEDLQLEAHSIDVVEREAG 494

Query: 181 ESLKNAKLAHQEAIKQEEEEIHMCARELLSCLDSLSQYKAVVSCKISDMESCLSKAAAGI 240
           E LKNAK+ H+EAIKQ EEEI +CAREL++C+DS+SQYK  V  KISDM S LSK A GI
Sbjct: 495 ELLKNAKVKHEEAIKQGEEEILICARELVACVDSVSQYKEFVRSKISDMRSNLSKTAVGI 554

Query: 241 SEAFKISMPA 251
           SEA+K S+PA
Sbjct: 555 SEAYKNSLPA 564

[Close]
BLAST of CsaV3_3G021940 vs. TAIR10
Match: AT3G54630.1 (Kinetochore protein Ndc80 (InterPro:IPR005550))

HSP 1 Score: 157.5 bits (397), Expect = 1.1e-38
Identity = 91/245 (37.14%), Postives = 148/245 (60.41%), Query Frame = 0 

Query: 1   MRRELQAVERDIGDAEVSRNLWEEKSRDLDATLGNTFKGLEAIAMECNQAMRRLKLDSCH 60
           MRRELQAVERD+ DAEV+R+ W++K+ +L++ + N F  ++ +A++CNQA+RRLKLD   
Sbjct: 317 MRRELQAVERDVADAEVARDGWDQKAWELNSQIRNQFHQIQTLAIDCNQALRRLKLDI-- 376

Query: 61  QYVLNAKGSTPADMMGIDYKTTIKPALDSFAEDIRRSSMMKLEELISLRQQSNENTAKIE 120
           Q+ +N +G TPA +MG+DYK+ +KPAL S  + I+ SS  K+EEL++L+   +E  +KIE
Sbjct: 377 QFAVNERGETPAAVMGVDYKSVVKPALCSLCDGIKGSSAEKVEELVTLQHHKSEMASKIE 436

Query: 121 SKRSHMASLQPHINEHETQLISLKDEMRDYILRCSTESKKMVEDVQQEAHNLDLVEGEAE 180
           SKRS + S+Q  IN+ E ++  +K E ++   +C  E+K +VE V+ EA N         
Sbjct: 437 SKRSLLGSIQLQINDLEEKMKLVKKETQELSTKCDLEAKTLVESVKAEALNXXXXXXXXX 496

Query: 181 ESLKNAKLAHQEAIKQEEEEIHMCARELLSCLDSLSQYKAVVSCKISDMESCLSKAAAGI 240
                                        + +DS+S+ K  +  KIS++++ ++  A+ +
Sbjct: 497 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXALIDSISKQKEYMDSKISEIKTGVADTASAV 556

Query: 241 SEAFK 246
           SE +K
Sbjct: 557 SEIYK 559

[Close]
BLAST of CsaV3_3G021940 vs. Swiss-Prot
Match: sp|Q9M1G5|NDC80_ARATH (Kinetochore protein NDC80 homolog OS=Arabidopsis thaliana OX=3702 GN=NDC80 PE=1 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 1.9e-37
Identity = 91/245 (37.14%), Postives = 148/245 (60.41%), Query Frame = 0 

Query: 1   MRRELQAVERDIGDAEVSRNLWEEKSRDLDATLGNTFKGLEAIAMECNQAMRRLKLDSCH 60
           MRRELQAVERD+ DAEV+R+ W++K+ +L++ + N F  ++ +A++CNQA+RRLKLD   
Sbjct: 317 MRRELQAVERDVADAEVARDGWDQKAWELNSQIRNQFHQIQTLAIDCNQALRRLKLDI-- 376

Query: 61  QYVLNAKGSTPADMMGIDYKTTIKPALDSFAEDIRRSSMMKLEELISLRQQSNENTAKIE 120
           Q+ +N +G TPA +MG+DYK+ +KPAL S  + I+ SS  K+EEL++L+   +E  +KIE
Sbjct: 377 QFAVNERGETPAAVMGVDYKSVVKPALCSLCDGIKGSSAEKVEELVTLQHHKSEMASKIE 436

Query: 121 SKRSHMASLQPHINEHETQLISLKDEMRDYILRCSTESKKMVEDVQQEAHNLDLVEGEAE 180
           SKRS + S+Q  IN+ E ++  +K E ++   +C  E+K +VE V+ EA N         
Sbjct: 437 SKRSLLGSIQLQINDLEEKMKLVKKETQELSTKCDLEAKTLVESVKAEALNXXXXXXXXX 496

Query: 181 ESLKNAKLAHQEAIKQEEEEIHMCARELLSCLDSLSQYKAVVSCKISDMESCLSKAAAGI 240
                                        + +DS+S+ K  +  KIS++++ ++  A+ +
Sbjct: 497 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXALIDSISKQKEYMDSKISEIKTGVADTASAV 556

Query: 241 SEAFK 246
           SE +K
Sbjct: 557 SEIYK 559

[Close]
BLAST of CsaV3_3G021940 vs. TrEMBL
Match: tr|A0A1S3AYB0|A0A1S3AYB0_CUCME (kinetochore protein NDC80 homolog OS=Cucumis melo OX=3656 GN=LOC103484089 PE=4 SV=1)

HSP 1 Score: 436.8 bits (1122), Expect = 3.3e-119
Identity = 230/249 (92.37%), Postives = 240/249 (96.39%), Query Frame = 0 

Query: 1   MRRELQAVERDIGDAEVSRNLWEEKSRDLDATLGNTFKGLEAIAMECNQAMRRLKLDSCH 60
           MRRELQAVERDIGDAEVSRN WEEKS DLDATLGN FK LEAIAMECNQAMRRLKLDSCH
Sbjct: 315 MRRELQAVERDIGDAEVSRNSWEEKSWDLDATLGNKFKELEAIAMECNQAMRRLKLDSCH 374

Query: 61  QYVLNAKGSTPADMMGIDYKTTIKPALDSFAEDIRRSSMMKLEELISLRQQSNENTAKIE 120
           QYVLNAKGSTPAD+MGIDYK+T+KPALDSFAEDIRRSSMMKLEELISLRQQS+ENTAKI+
Sbjct: 375 QYVLNAKGSTPADVMGIDYKSTVKPALDSFAEDIRRSSMMKLEELISLRQQSSENTAKID 434

Query: 121 SKRSHMASLQPHINEHETQLISLKDEMRDYILRCSTESKKMVEDVQQEAHNLDLVEGEAE 180
           SKR+ +ASLQ HINEHET+LISLKDEMRDYILRCSTESKKMVED QQEAHNLDLVEGEAE
Sbjct: 435 SKRNQIASLQSHINEHETKLISLKDEMRDYILRCSTESKKMVEDFQQEAHNLDLVEGEAE 494

Query: 181 ESLKNAKLAHQEAIKQEEEEIHMCARELLSCLDSLSQYKAVVSCKISDMESCLSKAAAGI 240
           ESLKNAKLA+QEA KQEEEEIHMCARELLSCLDS+SQYKAVVSCKISDMESCLSKAAAGI
Sbjct: 495 ESLKNAKLANQEATKQEEEEIHMCARELLSCLDSVSQYKAVVSCKISDMESCLSKAAAGI 554

Query: 241 SEAFKISMP 250
           SEAFK SMP
Sbjct: 555 SEAFKNSMP 563

[Close]
BLAST of CsaV3_3G021940 vs. TrEMBL
Match: tr|A0A2N9I696|A0A2N9I696_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS47496 PE=4 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 3.1e-77
Identity = 162/258 (62.79%), Postives = 203/258 (78.68%), Query Frame = 0 

Query: 1   MRRELQAVERDIGDAEVSRNLWEEKSRDLDATLGNTFKGLEAIAMECNQAMR-------- 60
           MRRELQAVERDI +AE++RN WEEKS +LDAT+G+  K LEA+AMECNQAMR        
Sbjct: 315 MRRELQAVERDIAEAELARNTWEEKSWELDATIGHKSKELEALAMECNQAMRSCSICGGS 374

Query: 61  RLKLDSCHQYVLNAKGSTPADMMGIDYKTTIKPALDSFAEDIRRSSMMKLEELISLRQQS 120
           RLKL +  QYVLN KG+TP+++MGIDYK+ +KPAL+S+A+DI++SSM KLEELISL+QQS
Sbjct: 375 RLKLGNEFQYVLNPKGTTPSEIMGIDYKSKLKPALNSYADDIQKSSMAKLEELISLQQQS 434

Query: 121 NENTAKIESKRSHMASLQPHINEHETQLISLKDEMRDYILRCSTESKKMVEDVQQEAHNL 180
            EN AKIE KR+H+ +LQ  I E E QL SLK E+RDY   C+ ESKKMVE+VQ EAHNL
Sbjct: 435 KENAAKIEGKRNHITALQSRIEELEAQLNSLKKEIRDYTYTCAAESKKMVEEVQMEAHNL 494

Query: 181 DLVEGEAEESLKNAKLAHQEAIKQEEEEIHMCARELLSCLDSLSQYKAVVSCKISDMESC 240
           D+VEGEA E LK +K   QEAIKQ EEEI MCAREL + +D +S+YK  V  +IS+M+S 
Sbjct: 495 DIVEGEAAEVLKTSKWRLQEAIKQSEEEIQMCARELFTLVDFVSKYKESVESRISEMKSN 554

Query: 241 LSKAAAGISEAFKISMPA 251
           L++ AA +S+A+K S+PA
Sbjct: 555 LTETAAAVSDAYKSSLPA 572

[Close]
BLAST of CsaV3_3G021940 vs. TrEMBL
Match: tr|A0A2P4HUA8|A0A2P4HUA8_QUESU (Kinetochore protein ndc80 OS=Quercus suber OX=58331 GN=CFP56_39471 PE=4 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 2.2e-75
Identity = 155/250 (62.00%), Postives = 198/250 (79.20%), Query Frame = 0 

Query: 1   MRRELQAVERDIGDAEVSRNLWEEKSRDLDATLGNTFKGLEAIAMECNQAMRRLKLDSCH 60
           MRRELQAVERDI +AE++RN WEEKS DLD  +G+ FK LEA+AMECNQAMRRLKL +  
Sbjct: 321 MRRELQAVERDIAEAEIARNTWEEKSWDLDTKIGHQFKELEALAMECNQAMRRLKLGNDF 380

Query: 61  QYVLNAKGSTPADMMGIDYKTTIKPALDSFAEDIRRSSMMKLEELISLRQQSNENTAKIE 120
           QYVLNAKGSTPA++MGIDYK+ +KP+L+S+A+DI++SSM KLEELISL+QQS EN AKIE
Sbjct: 381 QYVLNAKGSTPAEIMGIDYKSKLKPSLNSYADDIQKSSMEKLEELISLQQQSKENAAKIE 440

Query: 121 SKRSHMASLQPHINEHETQLISLKDEMRDYILRCSTESKKMVEDVQQEAHNLDLVEGEAE 180
            KR+++ +LQ  I E E QL  LK E ++Y   C+ E+KKMVE+VQ EAHNLD+VE EA 
Sbjct: 441 GKRNNITALQYRIEELEAQLSLLKKETQEYTYSCAAEAKKMVEEVQMEAHNLDIVEREAA 500

Query: 181 ESLKNAKLAHQEAIKQEEEEIHMCARELLSCLDSLSQYKAVVSCKISDMESCLSKAAAGI 240
           E LK ++   QEA++Q EEEI MCAREL S +D +S+YK  V  +IS+M+S LS+    +
Sbjct: 501 EVLKTSEWRLQEAVRQSEEEIQMCARELFSLVDFVSKYKEYVESRISEMKSNLSETVDAV 560

Query: 241 SEAFKISMPA 251
           S+A+K S+PA
Sbjct: 561 SDAYKNSLPA 570

[Close]
BLAST of CsaV3_3G021940 vs. TrEMBL
Match: tr|A0A2I4H4F2|A0A2I4H4F2_9ROSI (kinetochore protein NDC80 homolog OS=Juglans regia OX=51240 GN=LOC109013404 PE=4 SV=1)

HSP 1 Score: 289.7 bits (740), Expect = 6.5e-75
Identity = 155/250 (62.00%), Postives = 199/250 (79.60%), Query Frame = 0 

Query: 1   MRRELQAVERDIGDAEVSRNLWEEKSRDLDATLGNTFKGLEAIAMECNQAMRRLKLDSCH 60
           MRRELQA+ERD+G+ E++RN W+EKS DLDATLG+ FK LEA+A+ECNQAMRRLKL +  
Sbjct: 319 MRRELQALERDVGEVELARNTWDEKSWDLDATLGHKFKELEALAIECNQAMRRLKLSNDF 378

Query: 61  QYVLNAKGSTPADMMGIDYKTTIKPALDSFAEDIRRSSMMKLEELISLRQQSNENTAKIE 120
           QYVLNAKGSTP+++MGIDYK+ +KPALDS A+DI++SSM KLEELI L+Q S EN AKIE
Sbjct: 379 QYVLNAKGSTPSEIMGIDYKSKLKPALDSHADDIQKSSMAKLEELIFLQQHSKENVAKIE 438

Query: 121 SKRSHMASLQPHINEHETQLISLKDEMRDYILRCSTESKKMVEDVQQEAHNLDLVEGEAE 180
            KRSH+ +LQ  I+E E QL  LK E+ DY  RC+ E+KKM+E+VQ E HNLD+V+ EA 
Sbjct: 439 GKRSHIVALQSRIDELEAQLNLLKKEIEDYTYRCAAEAKKMMEEVQSETHNLDVVDREAA 498

Query: 181 ESLKNAKLAHQEAIKQEEEEIHMCARELLSCLDSLSQYKAVVSCKISDMESCLSKAAAGI 240
           E LK ++L  Q+AI+Q EE+I M A EL   +DS+S+YK  V  KIS+M+S L++AA  I
Sbjct: 499 EVLKTSELRLQDAIRQSEEDIQMHAYELFRLVDSVSRYKEYVESKISEMKSNLAEAAVTI 558

Query: 241 SEAFKISMPA 251
           S+A+K S+PA
Sbjct: 559 SDAYKGSLPA 568

[Close]
BLAST of CsaV3_3G021940 vs. TrEMBL
Match: tr|F6I2P0|F6I2P0_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_16s0013g00940 PE=4 SV=1)

HSP 1 Score: 283.9 bits (725), Expect = 3.6e-73
Identity = 153/250 (61.20%), Postives = 202/250 (80.80%), Query Frame = 0 

Query: 1   MRRELQAVERDIGDAEVSRNLWEEKSRDLDATLGNTFKGLEAIAMECNQAMRRLKLDSCH 60
           M+RELQAVERDI +AEV+RN WEEKS DLD T+G+ FK LEA+++ECNQA+RRLKL +  
Sbjct: 526 MKRELQAVERDITEAEVARNGWEEKSWDLDTTIGHKFKELEALSIECNQALRRLKLGNGL 585

Query: 61  QYVLNAKGSTPADMMGIDYKTTIKPALDSFAEDIRRSSMMKLEELISLRQQSNENTAKIE 120
           QYVLNAKGS+PA+++GIDYK+T+KPALDSFA+DI +SSM KLEELISL+QQS EN AKIE
Sbjct: 586 QYVLNAKGSSPAEVLGIDYKSTLKPALDSFADDINKSSMSKLEELISLQQQSVENAAKIE 645

Query: 121 SKRSHMASLQPHINEHETQLISLKDEMRDYILRCSTESKKMVEDVQQEAHNLDLVEGEAE 180
           +KR+ +A+LQ   +E E QLI LK E ++Y  RC+TE+KK+VEDV+ E HN+D+VE E  
Sbjct: 646 AKRNRLAALQSSSDEVEAQLIFLKKESQNYTSRCATEAKKLVEDVEIETHNVDIVEREVA 705

Query: 181 ESLKNAKLAHQEAIKQEEEEIHMCARELLSCLDSLSQYKAVVSCKISDMESCLSKAAAGI 240
           + L+ +KL  QEAIKQ EEEI MCA EL + +DS+S+YK  ++ KIS+M+  LS+ A  +
Sbjct: 706 DVLETSKLKLQEAIKQNEEEIQMCAWELYALVDSVSKYKEHMASKISEMKCNLSETAGAV 765

Query: 241 SEAFKISMPA 251
           S+++K S+ A
Sbjct: 766 SDSYKGSLLA 775

The following BLAST results are available for this feature:
BLAST of CsaV3_3G021940 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011651417.11.8e-12998.41PREDICTED: uncharacterized protein LOC101211369 [Cucumis sativus] >XP_011651418.... [more]
XP_004149971.22.2e-12294.40PREDICTED: kinetochore protein NDC80 homolog [Cucumis sativus][more]
XP_008439248.15.0e-11992.37PREDICTED: kinetochore protein NDC80 homolog [Cucumis melo] >XP_008439249.1 PRED... [more]
XP_022984383.12.8e-9877.60kinetochore protein NDC80 homolog [Cucurbita maxima][more]
XP_022923126.12.0e-9675.60kinetochore protein NDC80 homolog [Cucurbita moschata][more]
BLAST of CsaV3_3G021940 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G54630.11.1e-3837.14Kinetochore protein Ndc80 (InterPro:IPR005550)[more]
BLAST of CsaV3_3G021940 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9M1G5|NDC80_ARATH1.9e-3737.14Kinetochore protein NDC80 homolog OS=Arabidopsis thaliana OX=3702 GN=NDC80 PE=1 ... [more]
BLAST of CsaV3_3G021940 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3AYB0|A0A1S3AYB0_CUCME3.3e-11992.37kinetochore protein NDC80 homolog OS=Cucumis melo OX=3656 GN=LOC103484089 PE=4 S... [more]
tr|A0A2N9I696|A0A2N9I696_FAGSY3.1e-7762.79Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS47496 PE=4 SV=1[more]
tr|A0A2P4HUA8|A0A2P4HUA8_QUESU2.2e-7562.00Kinetochore protein ndc80 OS=Quercus suber OX=58331 GN=CFP56_39471 PE=4 SV=1[more]
tr|A0A2I4H4F2|A0A2I4H4F2_9ROSI6.5e-7562.00kinetochore protein NDC80 homolog OS=Juglans regia OX=51240 GN=LOC109013404 PE=4... [more]
tr|F6I2P0|F6I2P0_VITVI3.6e-7361.20Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_16s0013g00940 PE=4 SV=... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR005550Kinetochore_Ndc80
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0008152 metabolic process
biological_process GO:0051315 attachment of mitotic spindle microtubules to kinetochore
biological_process GO:0007010 cytoskeleton organization
cellular_component GO:0005575 cellular_component
cellular_component GO:0000778 condensed nuclear chromosome kinetochore
cellular_component GO:0031262 Ndc80 complex
molecular_function GO:0003674 molecular_function
molecular_function GO:0003824 catalytic activity
molecular_function GO:0043167 ion binding
molecular_function GO:0005200 structural constituent of cytoskeleton
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G021940.1CsaV3_3G021940.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 133..153
NoneNo IPR availableCOILSCoilCoilcoord: 180..200
IPR005550Kinetochore protein Ndc80PANTHERPTHR10643KINETOCHORE PROTEIN NDC80coord: 1..236

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_3G021940CSPI03G22030Wild cucumber (PI 183967)cpicucB153
CsaV3_3G021940Cucsa.012910Cucumber (Gy14) v1cgycucB303
CsaV3_3G021940CsGy3G021260Cucumber (Gy14) v2cgybcucB117
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_3G021940Silver-seed gourdcarcucB0575
CsaV3_3G021940Silver-seed gourdcarcucB1033
CsaV3_3G021940Cucurbita maxima (Rimu)cmacucB0384
CsaV3_3G021940Cucurbita maxima (Rimu)cmacucB0488
CsaV3_3G021940Cucurbita moschata (Rifu)cmocucB0381
CsaV3_3G021940Cucurbita moschata (Rifu)cmocucB0477
CsaV3_3G021940Cucurbita pepo (Zucchini)cpecucB0040
CsaV3_3G021940Cucurbita pepo (Zucchini)cpecucB0259
CsaV3_3G021940Wild cucumber (PI 183967)cpicucB144
CsaV3_3G021940Bottle gourd (USVL1VR-Ls)cuclsiB221
CsaV3_3G021940Melon (DHL92) v3.5.1cucmeB239
CsaV3_3G021940Melon (DHL92) v3.5.1cucmeB255
CsaV3_3G021940Melon (DHL92) v3.6.1cucmedB238
CsaV3_3G021940Melon (DHL92) v3.6.1cucmedB252
CsaV3_3G021940Watermelon (Charleston Gray)cucwcgB227
CsaV3_3G021940Watermelon (97103) v1cucwmB241
CsaV3_3G021940Watermelon (97103) v2cucwmbB208
CsaV3_3G021940Wax gourdcucwgoB278