CsaV3_3G021880 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G021880
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
Descriptioncation/H(+) antiporter 10-like
Locationchr3 : 19012926 .. 19013246 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTCACTGCGTTCTCACCGTGCACAGTCATGCACGACGATGTATGCACATCAGCACTCGACAAGATTGCATCCCTTATAATGTTTCCTTTCCATATAACATGGACTTTTATAATACTTTTCCTTTCCATATAACATGGAGTACTTTGGATGGTTATATCAATGAAGACGACAACAAGATTAGGACATTGAACTACAGCGTCCTCGAAAGGGCTCCTGGTTCAGTCGCCATATTGGGCGACCGAGGAAATTTAGGGCGAAAAGGAGTAAAAACGCTGTCAACAAGAATGAGATCTAAATACTCGGTTGTGCATGCATGA

mRNA sequence

ATGCTTCACTGCGTTCTCACCGTGCACAGTCATGCACGACGATGTATGCACATCAGCACTCGACAAGATTGCATCCCTTATAATGTTTCCTTTCCATATAACATGGACTTTTATAATACTTTTCCTTTCCATATAACATGGAGTACTTTGGATGGTTATATCAATGAAGACGACAACAAGATTAGGACATTGAACTACAGCGTCCTCGAAAGGGCTCCTGGTTCAGTCGCCATATTGGGCGACCGAGGAAATTTAGGGCGAAAAGGAGTAAAAACGCTGTCAACAAGAATGAGATCTAAATACTCGGTTGTGCATGCATGA

Coding sequence (CDS)

ATGCTTCACTGCGTTCTCACCGTGCACAGTCATGCACGACGATGTATGCACATCAGCACTCGACAAGATTGCATCCCTTATAATGTTTCCTTTCCATATAACATGGACTTTTATAATACTTTTCCTTTCCATATAACATGGAGTACTTTGGATGGTTATATCAATGAAGACGACAACAAGATTAGGACATTGAACTACAGCGTCCTCGAAAGGGCTCCTGGTTCAGTCGCCATATTGGGCGACCGAGGAAATTTAGGGCGAAAAGGAGTAAAAACGCTGTCAACAAGAATGAGATCTAAATACTCGGTTGTGCATGCATGA

Protein sequence

MLHCVLTVHSHARRCMHISTRQDCIPYNVSFPYNMDFYNTFPFHITWSTLDGYINEDDNKIRTLNYSVLERAPGSVAILGDRGNLGRKGVKTLSTRMRSKYSVVHA
Homology
[Close]
BLAST of CsaV3_3G021880 vs. NCBI nr
Match: KGN57868.1 (hypothetical protein Csa_3G356580 [Cucumis sativus])

HSP 1 Score: 225.7 bits (574), Expect = 7.4e-56
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0 

Query: 1   MLHCVLTVHSHARRCMHISTRQDCIPYNVSFPYNMDFYNTFPFHITWSTLDGYINEDDNK 60
           MLHCVLTVHSHARRCMHISTRQDCIPYNVSFPYNMDFYNTFPFHITWSTLDGYINEDDNK
Sbjct: 1   MLHCVLTVHSHARRCMHISTRQDCIPYNVSFPYNMDFYNTFPFHITWSTLDGYINEDDNK 60

Query: 61  IRTLNYSVLERAPGSVAILGDRGNLGRKGVKTLSTRMRSKYSVVHA 107
           IRTLNYSVLERAPGSVAILGDRGNLGRKGVKTLSTRMRSKYSVVHA
Sbjct: 61  IRTLNYSVLERAPGSVAILGDRGNLGRKGVKTLSTRMRSKYSVVHA 106

[Close]
BLAST of CsaV3_3G021880 vs. NCBI nr
Match: XP_023552823.1 (cation/H(+) antiporter 3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 74.3 bits (181), Expect = 2.8e-10
Identity = 38/62 (61.29%), Postives = 44/62 (70.97%), Query Frame = 0 

Query: 42  PFHITWSTLDGYINEDDNKIRTLNYSVLERAPGSVAILGDRGNLGRKGVKTLSTRMRSKY 101
           PFHITW T+DG+I++DD KIR LNYSVLE+AP SV I  DRGNLGR      S+ M    
Sbjct: 505 PFHITW-TVDGFIDQDDQKIRKLNYSVLEKAPCSVGIFVDRGNLGRFRAMVSSSEMICSC 564

Query: 102 SV 104
           SV
Sbjct: 565 SV 565

[Close]
BLAST of CsaV3_3G021880 vs. NCBI nr
Match: XP_022922546.1 (cation/H(+) antiporter 12-like [Cucurbita moschata])

HSP 1 Score: 73.2 bits (178), Expect = 6.1e-10
Identity = 37/62 (59.68%), Postives = 44/62 (70.97%), Query Frame = 0 

Query: 42  PFHITWSTLDGYINEDDNKIRTLNYSVLERAPGSVAILGDRGNLGRKGVKTLSTRMRSKY 101
           PFHITW T+DG+I++DD KIR LNY+VLE+AP SV I  DRGNLGR      S+ M    
Sbjct: 590 PFHITW-TVDGFIDQDDQKIRKLNYNVLEKAPCSVGIFVDRGNLGRFRAMVWSSEMICSC 649

Query: 102 SV 104
           SV
Sbjct: 650 SV 650

[Close]
BLAST of CsaV3_3G021880 vs. NCBI nr
Match: XP_022985099.1 (LOW QUALITY PROTEIN: cation/H(+) antiporter 3-like [Cucurbita maxima])

HSP 1 Score: 72.8 bits (177), Expect = 8.0e-10
Identity = 38/62 (61.29%), Postives = 43/62 (69.35%), Query Frame = 0 

Query: 42  PFHITWSTLDGYINEDDNKIRTLNYSVLERAPGSVAILGDRGNLGRKGVKTLSTRMRSKY 101
           PFHITW T+DG+I+ DD KIR LNYSVLE+AP SV I  DRGNLGR      S+ M    
Sbjct: 592 PFHITW-TVDGFIDRDDQKIRKLNYSVLEKAPCSVGIFVDRGNLGRFRAMVSSSGMICSC 651

Query: 102 SV 104
           SV
Sbjct: 652 SV 652

[Close]
BLAST of CsaV3_3G021880 vs. NCBI nr
Match: XP_016898962.1 (PREDICTED: cation/H(+) antiporter 10-like [Cucumis melo])

HSP 1 Score: 70.9 bits (172), Expect = 3.1e-09
Identity = 35/62 (56.45%), Postives = 42/62 (67.74%), Query Frame = 0 

Query: 42  PFHITWSTLDGYINEDDNKIRTLNYSVLERAPGSVAILGDRGNLGRKGVKTLSTRMRSKY 101
           PFHITW T+DGYI   DN +R LNY+VL+RAP S+ I  DRG L     +  S+RM S Y
Sbjct: 580 PFHITW-TMDGYIERVDNNVRILNYNVLKRAPCSIGIFIDRGKLEHIRARMSSSRMTSSY 639

Query: 102 SV 104
           SV
Sbjct: 640 SV 640

[Close]
BLAST of CsaV3_3G021880 vs. TAIR10
Match: AT3G44930.1 (cation/H+ exchanger 10)

HSP 1 Score: 48.1 bits (113), Expect = 3.8e-06
Identity = 23/48 (47.92%), Postives = 29/48 (60.42%), Query Frame = 0 

Query: 49  TLDGYINEDDNKIRTLNYSVLERAPGSVAILGDRGNLGRKGVKTLSTR 97
           T+DG    D+  IR LN S+L+RAP S+ IL DRG   RK + T   R
Sbjct: 587 TVDGLFESDNTAIRHLNQSLLDRAPCSIGILVDRGQFSRKSIVTSKKR 634

[Close]
BLAST of CsaV3_3G021880 vs. TAIR10
Match: AT3G44920.1 (cation/H+ exchanger 11)

HSP 1 Score: 46.2 bits (108), Expect = 1.5e-05
Identity = 23/48 (47.92%), Postives = 27/48 (56.25%), Query Frame = 0 

Query: 49  TLDGYINEDDNKIRTLNYSVLERAPGSVAILGDRGNLGRKGVKTLSTR 97
           T+DG    DD   R LN S+L+RAP S+ IL DRG   RK   T   R
Sbjct: 587 TVDGMFESDDLAARQLNQSLLDRAPCSIGILVDRGQFSRKSYVTSKNR 634

[Close]
BLAST of CsaV3_3G021880 vs. TAIR10
Match: AT5G22900.1 (cation/H+ exchanger 3)

HSP 1 Score: 44.7 bits (104), Expect = 4.2e-05
Identity = 22/51 (43.14%), Postives = 30/51 (58.82%), Query Frame = 0 

Query: 42  PFHITWSTLDGYINEDDNKIRTLNYSVLERAPGSVAILGDRGNLGRKGVKT 93
           PFH TWS     +  ++N IR LN SVL+ AP SV +   R + GRK + +
Sbjct: 609 PFHQTWSADGSALISNNNMIRNLNKSVLDVAPCSVGVFVYRSSSGRKNISS 659

[Close]
BLAST of CsaV3_3G021880 vs. TAIR10
Match: AT2G30240.1 (Cation/hydrogen exchanger family protein)

HSP 1 Score: 42.7 bits (99), Expect = 1.6e-04
Identity = 24/55 (43.64%), Postives = 35/55 (63.64%), Query Frame = 0 

Query: 42  PFHITWSTLDGYINEDDNKIRTLNYSVLERAPGSVAILGDRGNL-GRKGVKTLST 96
           PFH  ++ +DG + + +  IRT+N +VL+ AP SVAI  DRG   GR+ V   +T
Sbjct: 589 PFHKQYA-IDGTVGQVNGPIRTINLNVLDAAPCSVAIFIDRGETEGRRSVLMTNT 642

[Close]
BLAST of CsaV3_3G021880 vs. TAIR10
Match: AT3G44910.1 (cation/H+ exchanger 12)

HSP 1 Score: 41.2 bits (95), Expect = 4.7e-04
Identity = 20/43 (46.51%), Postives = 26/43 (60.47%), Query Frame = 0 

Query: 49  TLDGYINEDDNKIRTLNYSVLERAPGSVAILGDRGNLGRKGVK 92
           T+DG    +D  IR LN S+L+ A  S+ IL DRG L  KG +
Sbjct: 578 TVDGAFESEDEAIRRLNESLLKSASCSIGILVDRGQLSLKGTR 620

[Close]
BLAST of CsaV3_3G021880 vs. Swiss-Prot
Match: sp|Q58P69|CHX10_ARATH (Cation/H(+) antiporter 10 OS=Arabidopsis thaliana OX=3702 GN=CHX10 PE=2 SV=2)

HSP 1 Score: 48.1 bits (113), Expect = 6.9e-05
Identity = 23/48 (47.92%), Postives = 29/48 (60.42%), Query Frame = 0 

Query: 49  TLDGYINEDDNKIRTLNYSVLERAPGSVAILGDRGNLGRKGVKTLSTR 97
           T+DG    D+  IR LN S+L+RAP S+ IL DRG   RK + T   R
Sbjct: 587 TVDGLFESDNTAIRHLNQSLLDRAPCSIGILVDRGQFSRKSIVTSKKR 634

[Close]
BLAST of CsaV3_3G021880 vs. Swiss-Prot
Match: sp|Q9FYB9|CHX11_ARATH (Cation/H(+) antiporter 11 OS=Arabidopsis thaliana OX=3702 GN=CHX11 PE=2 SV=2)

HSP 1 Score: 46.2 bits (108), Expect = 2.6e-04
Identity = 23/48 (47.92%), Postives = 27/48 (56.25%), Query Frame = 0 

Query: 49  TLDGYINEDDNKIRTLNYSVLERAPGSVAILGDRGNLGRKGVKTLSTR 97
           T+DG    DD   R LN S+L+RAP S+ IL DRG   RK   T   R
Sbjct: 587 TVDGMFESDDLAARQLNQSLLDRAPCSIGILVDRGQFSRKSYVTSKNR 634

[Close]
BLAST of CsaV3_3G021880 vs. Swiss-Prot
Match: sp|Q9FFB8|CHX3_ARATH (Cation/H(+) antiporter 3 OS=Arabidopsis thaliana OX=3702 GN=CHX3 PE=2 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 7.7e-04
Identity = 22/51 (43.14%), Postives = 30/51 (58.82%), Query Frame = 0 

Query: 42  PFHITWSTLDGYINEDDNKIRTLNYSVLERAPGSVAILGDRGNLGRKGVKT 93
           PFH TWS     +  ++N IR LN SVL+ AP SV +   R + GRK + +
Sbjct: 609 PFHQTWSADGSALISNNNMIRNLNKSVLDVAPCSVGVFVYRSSSGRKNISS 659

[Close]
BLAST of CsaV3_3G021880 vs. TrEMBL
Match: tr|A0A0A0L7U0|A0A0A0L7U0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G356580 PE=4 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 4.9e-56
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0 

Query: 1   MLHCVLTVHSHARRCMHISTRQDCIPYNVSFPYNMDFYNTFPFHITWSTLDGYINEDDNK 60
           MLHCVLTVHSHARRCMHISTRQDCIPYNVSFPYNMDFYNTFPFHITWSTLDGYINEDDNK
Sbjct: 1   MLHCVLTVHSHARRCMHISTRQDCIPYNVSFPYNMDFYNTFPFHITWSTLDGYINEDDNK 60

Query: 61  IRTLNYSVLERAPGSVAILGDRGNLGRKGVKTLSTRMRSKYSVVHA 107
           IRTLNYSVLERAPGSVAILGDRGNLGRKGVKTLSTRMRSKYSVVHA
Sbjct: 61  IRTLNYSVLERAPGSVAILGDRGNLGRKGVKTLSTRMRSKYSVVHA 106

[Close]
BLAST of CsaV3_3G021880 vs. TrEMBL
Match: tr|A0A1S4DSI7|A0A1S4DSI7_CUCME (cation/H(+) antiporter 10-like OS=Cucumis melo OX=3656 GN=LOC103484220 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 2.0e-09
Identity = 35/62 (56.45%), Postives = 42/62 (67.74%), Query Frame = 0 

Query: 42  PFHITWSTLDGYINEDDNKIRTLNYSVLERAPGSVAILGDRGNLGRKGVKTLSTRMRSKY 101
           PFHITW T+DGYI   DN +R LNY+VL+RAP S+ I  DRG L     +  S+RM S Y
Sbjct: 580 PFHITW-TMDGYIERVDNNVRILNYNVLKRAPCSIGIFIDRGKLEHIRARMSSSRMTSSY 639

Query: 102 SV 104
           SV
Sbjct: 640 SV 640

[Close]
BLAST of CsaV3_3G021880 vs. TrEMBL
Match: tr|A0A0A0LCS1|A0A0A0LCS1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G355580 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.6e-09
Identity = 36/62 (58.06%), Postives = 42/62 (67.74%), Query Frame = 0 

Query: 42  PFHITWSTLDGYINEDDNKIRTLNYSVLERAPGSVAILGDRGNLGRKGVKTLSTRMRSKY 101
           PFHITW T+DGYI   DN +RTLNY+VL+RAP SV I  DRG L     + +  R RS Y
Sbjct: 582 PFHITW-TMDGYIERVDNNVRTLNYNVLKRAPCSVGIFADRGKL-----EHIKARKRSSY 637

Query: 102 SV 104
           SV
Sbjct: 642 SV 637

[Close]
BLAST of CsaV3_3G021880 vs. TrEMBL
Match: tr|A0A2P6QKH9|A0A2P6QKH9_ROSCH (Putative cation/H+ exchanger OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr5g0071781 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.5e-07
Identity = 35/56 (62.50%), Postives = 38/56 (67.86%), Query Frame = 0 

Query: 42  PFHITWSTLDGYINEDDNKIRTLNYSVLERAPGSVAILGDRGNLGRKG--VKTLST 96
           PFH  WS     I  +DN IRTLN+SVLERAP SV IL DRG+LGR    V TLST
Sbjct: 585 PFHRKWSIDGSSIESEDNTIRTLNFSVLERAPCSVGILVDRGHLGRSTSVVSTLST 640

[Close]
BLAST of CsaV3_3G021880 vs. TrEMBL
Match: tr|A0A0A0L7A8|A0A0A0L7A8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G355570 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 3.2e-07
Identity = 32/62 (51.61%), Postives = 45/62 (72.58%), Query Frame = 0 

Query: 42  PFHITWSTLDGYINEDDNKIRTLNYSVLERAPGSVAILGDRGNLGRKGVKTLSTRMRSKY 101
           PFHITW T DG ++++DN +R LN SV+E+AP SVAIL D+G+LG       S+ +R +Y
Sbjct: 573 PFHITW-TSDGLVDQEDNTMRNLNCSVIEKAPCSVAILADKGHLG-SIASMASSGVRCEY 632

Query: 102 SV 104
           +V
Sbjct: 633 TV 632

The following BLAST results are available for this feature:
BLAST of CsaV3_3G021880 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN57868.17.4e-56100.00hypothetical protein Csa_3G356580 [Cucumis sativus][more]
XP_023552823.12.8e-1061.29cation/H(+) antiporter 3-like [Cucurbita pepo subsp. pepo][more]
XP_022922546.16.1e-1059.68cation/H(+) antiporter 12-like [Cucurbita moschata][more]
XP_022985099.18.0e-1061.29LOW QUALITY PROTEIN: cation/H(+) antiporter 3-like [Cucurbita maxima][more]
XP_016898962.13.1e-0956.45PREDICTED: cation/H(+) antiporter 10-like [Cucumis melo][more]
BLAST of CsaV3_3G021880 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G44930.13.8e-0647.92cation/H+ exchanger 10[more]
AT3G44920.11.5e-0547.92cation/H+ exchanger 11[more]
AT5G22900.14.2e-0543.14cation/H+ exchanger 3[more]
AT2G30240.11.6e-0443.64Cation/hydrogen exchanger family protein[more]
AT3G44910.14.7e-0446.51cation/H+ exchanger 12[more]
BLAST of CsaV3_3G021880 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q58P69|CHX10_ARATH6.9e-0547.92Cation/H(+) antiporter 10 OS=Arabidopsis thaliana OX=3702 GN=CHX10 PE=2 SV=2[more]
sp|Q9FYB9|CHX11_ARATH2.6e-0447.92Cation/H(+) antiporter 11 OS=Arabidopsis thaliana OX=3702 GN=CHX11 PE=2 SV=2[more]
sp|Q9FFB8|CHX3_ARATH7.7e-0443.14Cation/H(+) antiporter 3 OS=Arabidopsis thaliana OX=3702 GN=CHX3 PE=2 SV=1[more]
BLAST of CsaV3_3G021880 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L7U0|A0A0A0L7U0_CUCSA4.9e-56100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G356580 PE=4 SV=1[more]
tr|A0A1S4DSI7|A0A1S4DSI7_CUCME2.0e-0956.45cation/H(+) antiporter 10-like OS=Cucumis melo OX=3656 GN=LOC103484220 PE=4 SV=1[more]
tr|A0A0A0LCS1|A0A0A0LCS1_CUCSA2.6e-0958.06Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G355580 PE=4 SV=1[more]
tr|A0A2P6QKH9|A0A2P6QKH9_ROSCH2.5e-0762.50Putative cation/H+ exchanger OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr5g0071781... [more]
tr|A0A0A0L7A8|A0A0A0L7A8_CUCSA3.2e-0751.61Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G355570 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0030001 metal ion transport
biological_process GO:0015672 monovalent inorganic cation transport
biological_process GO:0006885 regulation of pH
biological_process GO:0055085 transmembrane transport
biological_process GO:0006812 cation transport
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
molecular_function GO:0015299 solute:proton antiporter activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G021880.1CsaV3_3G021880.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR32468:SF17CATION/H + ANTIPORTER 3-RELATEDcoord: 41..94
NoneNo IPR availablePANTHERPTHR32468CATION/H + ANTIPORTERcoord: 41..94

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_3G021880CSPI03G22090Wild cucumber (PI 183967)cpicucB153
CsaV3_3G021880Carg20358Silver-seed gourdcarcucB0575
CsaV3_3G021880Carg15085Silver-seed gourdcarcucB1033
CsaV3_3G021880Cla97C05G090850Watermelon (97103) v2cucwmbB208
CsaV3_3G021880Bhi01G001067Wax gourdcucwgoB278
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_3G021880Cucumber (Gy14) v2cgybcucB117
CsaV3_3G021880Cucumber (Gy14) v1cgycucB303
CsaV3_3G021880Cucurbita maxima (Rimu)cmacucB0384
CsaV3_3G021880Cucurbita maxima (Rimu)cmacucB0488
CsaV3_3G021880Cucurbita moschata (Rifu)cmocucB0381
CsaV3_3G021880Cucurbita moschata (Rifu)cmocucB0477
CsaV3_3G021880Cucurbita pepo (Zucchini)cpecucB0040
CsaV3_3G021880Cucurbita pepo (Zucchini)cpecucB0259
CsaV3_3G021880Wild cucumber (PI 183967)cpicucB144
CsaV3_3G021880Bottle gourd (USVL1VR-Ls)cuclsiB221
CsaV3_3G021880Melon (DHL92) v3.5.1cucmeB239
CsaV3_3G021880Melon (DHL92) v3.6.1cucmedB238
CsaV3_3G021880Watermelon (Charleston Gray)cucwcgB227
CsaV3_3G021880Watermelon (97103) v1cucwmB241