CSPI03G22090 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI03G22090
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionCation/H(+) antiporter 10
LocationChr3 : 18507207 .. 18507425 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACTTTTATAATACTTTTCCTTTCCATATAACATGGAGTACTTTGGATGGTTATATCAATGAAGACGACAACAAGATTAGGACATTGAACTACAGCGTCCTCGAAAGGGCTCCTGGTTCAGTCGCCATATTGGGCGACCGAGGAAATTTAGGGCGAAAAGGAGTAAAAACGCTGTCAACAAGAATGAGATCTAAATACTCGGTTGTGCATGCATGA

mRNA sequence

ATGGACTTTTATAATACTTTTCCTTTCCATATAACATGGAGTACTTTGGATGGTTATATCAATGAAGACGACAACAAGATTAGGACATTGAACTACAGCGTCCTCGAAAGGGCTCCTGGTTCAGTCGCCATATTGGGCGACCGAGGAAATTTAGGGCGAAAAGGAGTAAAAACGCTGTCAACAAGAATGAGATCTAAATACTCGGTTGTGCATGCATGA

Coding sequence (CDS)

ATGGACTTTTATAATACTTTTCCTTTCCATATAACATGGAGTACTTTGGATGGTTATATCAATGAAGACGACAACAAGATTAGGACATTGAACTACAGCGTCCTCGAAAGGGCTCCTGGTTCAGTCGCCATATTGGGCGACCGAGGAAATTTAGGGCGAAAAGGAGTAAAAACGCTGTCAACAAGAATGAGATCTAAATACTCGGTTGTGCATGCATGA
Homology
[Close]
BLAST of CSPI03G22090 vs. TrEMBL
Match: A0A0A0L7U0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G356580 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 2.5e-34
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 1 

Query: 1   MDFYNTFPFHITWSTLDGYINEDDNKIRTLNYSVLERAPGSVAILGDRGNLGRKGVKTLS 60
           MDFYNTFPFHITWSTLDGYINEDDNKIRTLNYSVLERAPGSVAILGDRGNLGRKGVKTLS
Sbjct: 35  MDFYNTFPFHITWSTLDGYINEDDNKIRTLNYSVLERAPGSVAILGDRGNLGRKGVKTLS 94

Query: 61  TRMRSKYSVVHA 73
           TRMRSKYSVVHA
Sbjct: 95  TRMRSKYSVVHA 106

[Close]
BLAST of CSPI03G22090 vs. TrEMBL
Match: A0A0A0LCS1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G355580 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 7.5e-10
Identity = 36/62 (58.06%), Postives = 42/62 (67.74%), Query Frame = 1 

Query: 8   PFHITWSTLDGYINEDDNKIRTLNYSVLERAPGSVAILGDRGNLGRKGVKTLSTRMRSKY 67
           PFHITW T+DGYI   DN +RTLNY+VL+RAP SV I  DRG L     + +  R RS Y
Sbjct: 582 PFHITW-TMDGYIERVDNNVRTLNYNVLKRAPCSVGIFADRGKL-----EHIKARKRSSY 637

Query: 68  SV 70
           SV
Sbjct: 642 SV 637

[Close]
BLAST of CSPI03G22090 vs. TrEMBL
Match: A0A0A0L7A8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G355570 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.2e-07
Identity = 32/62 (51.61%), Postives = 45/62 (72.58%), Query Frame = 1 

Query: 8   PFHITWSTLDGYINEDDNKIRTLNYSVLERAPGSVAILGDRGNLGRKGVKTLSTRMRSKY 67
           PFHITW T DG ++++DN +R LN SV+E+AP SVAIL D+G+LG       S+ +R +Y
Sbjct: 573 PFHITW-TSDGLVDQEDNTMRNLNCSVIEKAPCSVAILADKGHLG-SIASMASSGVRCEY 632

Query: 68  SV 70
           +V
Sbjct: 633 TV 632

[Close]
BLAST of CSPI03G22090 vs. TrEMBL
Match: M5W3S6_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa025303mg PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 2.7e-07
Identity = 31/46 (67.39%), Postives = 35/46 (76.09%), Query Frame = 1 

Query: 8   PFHITWSTLDGYINEDDNKIRTLNYSVLERAPGSVAILGDRGNLGR 54
           PFH TWS +DG +  +DN IRTLN SVL+RAP SV IL DRG LGR
Sbjct: 594 PFHRTWS-IDGSVESEDNNIRTLNCSVLDRAPCSVGILVDRGYLGR 638

[Close]
BLAST of CSPI03G22090 vs. TrEMBL
Match: A0A068V9Z2_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00007930001 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 6.5e-06
Identity = 28/55 (50.91%), Postives = 37/55 (67.27%), Query Frame = 1 

Query: 8   PFHITWSTLDGYINEDDNKIRTLNYSVLERAPGSVAILGDRGNLGRKGVKTLSTR 63
           PFH  W  +DG +  +D  +R +N +VL+RAP SV IL DRG+LGR G  TLS +
Sbjct: 586 PFHRKWG-IDGSVESEDQCLRMVNRNVLDRAPCSVGILVDRGHLGRSGSMTLSEK 639

[Close]
BLAST of CSPI03G22090 vs. TAIR10
Match: AT3G44930.1 (AT3G44930.1 cation/H+ exchanger 10)

HSP 1 Score: 48.1 bits (113), Expect = 2.6e-06
Identity = 23/48 (47.92%), Postives = 29/48 (60.42%), Query Frame = 1 

Query: 15  TLDGYINEDDNKIRTLNYSVLERAPGSVAILGDRGNLGRKGVKTLSTR 63
           T+DG    D+  IR LN S+L+RAP S+ IL DRG   RK + T   R
Sbjct: 587 TVDGLFESDNTAIRHLNQSLLDRAPCSIGILVDRGQFSRKSIVTSKKR 634

[Close]
BLAST of CSPI03G22090 vs. TAIR10
Match: AT3G44920.1 (AT3G44920.1 cation/H+ exchanger 11)

HSP 1 Score: 46.2 bits (108), Expect = 1.0e-05
Identity = 23/48 (47.92%), Postives = 27/48 (56.25%), Query Frame = 1 

Query: 15  TLDGYINEDDNKIRTLNYSVLERAPGSVAILGDRGNLGRKGVKTLSTR 63
           T+DG    DD   R LN S+L+RAP S+ IL DRG   RK   T   R
Sbjct: 587 TVDGMFESDDLAARQLNQSLLDRAPCSIGILVDRGQFSRKSYVTSKNR 634

[Close]
BLAST of CSPI03G22090 vs. NCBI nr
Match: gi|700202735|gb|KGN57868.1| (hypothetical protein Csa_3G356580 [Cucumis sativus])

HSP 1 Score: 152.1 bits (383), Expect = 3.7e-34
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 1 

Query: 1   MDFYNTFPFHITWSTLDGYINEDDNKIRTLNYSVLERAPGSVAILGDRGNLGRKGVKTLS 60
           MDFYNTFPFHITWSTLDGYINEDDNKIRTLNYSVLERAPGSVAILGDRGNLGRKGVKTLS
Sbjct: 35  MDFYNTFPFHITWSTLDGYINEDDNKIRTLNYSVLERAPGSVAILGDRGNLGRKGVKTLS 94

Query: 61  TRMRSKYSVVHA 73
           TRMRSKYSVVHA
Sbjct: 95  TRMRSKYSVVHA 106

[Close]
BLAST of CSPI03G22090 vs. NCBI nr
Match: gi|449463487|ref|XP_004149465.1| (PREDICTED: cation/H(+) antiporter 12-like [Cucumis sativus])

HSP 1 Score: 70.9 bits (172), Expect = 1.1e-09
Identity = 36/62 (58.06%), Postives = 42/62 (67.74%), Query Frame = 1 

Query: 8   PFHITWSTLDGYINEDDNKIRTLNYSVLERAPGSVAILGDRGNLGRKGVKTLSTRMRSKY 67
           PFHITW T+DGYI   DN +RTLNY+VL+RAP SV I  DRG L     + +  R RS Y
Sbjct: 582 PFHITW-TMDGYIERVDNNVRTLNYNVLKRAPCSVGIFADRGKL-----EHIKARKRSSY 637

Query: 68  SV 70
           SV
Sbjct: 642 SV 637

[Close]
BLAST of CSPI03G22090 vs. NCBI nr
Match: gi|700202732|gb|KGN57865.1| (hypothetical protein Csa_3G355570 [Cucumis sativus])

HSP 1 Score: 63.5 bits (153), Expect = 1.7e-07
Identity = 32/62 (51.61%), Postives = 45/62 (72.58%), Query Frame = 1 

Query: 8   PFHITWSTLDGYINEDDNKIRTLNYSVLERAPGSVAILGDRGNLGRKGVKTLSTRMRSKY 67
           PFHITW T DG ++++DN +R LN SV+E+AP SVAIL D+G+LG       S+ +R +Y
Sbjct: 573 PFHITW-TSDGLVDQEDNTMRNLNCSVIEKAPCSVAILADKGHLG-SIASMASSGVRCEY 632

Query: 68  SV 70
           +V
Sbjct: 633 TV 632

[Close]
BLAST of CSPI03G22090 vs. NCBI nr
Match: gi|449463489|ref|XP_004149466.1| (PREDICTED: cation/H(+) antiporter 4-like [Cucumis sativus])

HSP 1 Score: 63.5 bits (153), Expect = 1.7e-07
Identity = 32/62 (51.61%), Postives = 45/62 (72.58%), Query Frame = 1 

Query: 8   PFHITWSTLDGYINEDDNKIRTLNYSVLERAPGSVAILGDRGNLGRKGVKTLSTRMRSKY 67
           PFHITW T DG ++++DN +R LN SV+E+AP SVAIL D+G+LG       S+ +R +Y
Sbjct: 456 PFHITW-TSDGLVDQEDNTMRNLNCSVIEKAPCSVAILADKGHLG-SIASMASSGVRCEY 515

Query: 68  SV 70
           +V
Sbjct: 516 TV 515

[Close]
BLAST of CSPI03G22090 vs. NCBI nr
Match: gi|645215532|ref|XP_008237001.1| (PREDICTED: cation/H(+) antiporter 4-like [Prunus mume])

HSP 1 Score: 62.4 bits (150), Expect = 3.8e-07
Identity = 31/46 (67.39%), Postives = 35/46 (76.09%), Query Frame = 1 

Query: 8   PFHITWSTLDGYINEDDNKIRTLNYSVLERAPGSVAILGDRGNLGR 54
           PFH TWS +DG +  +DN IRTLN SVL+RAP SV IL DRG LGR
Sbjct: 556 PFHRTWS-IDGSVESEDNNIRTLNCSVLDRAPCSVGILVDRGYLGR 600

The following BLAST results are available for this feature:
BLAST of CSPI03G22090 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI03G22090 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L7U0_CUCSA2.5e-34100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G356580 PE=4 SV=1[more]
A0A0A0LCS1_CUCSA7.5e-1058.06Uncharacterized protein OS=Cucumis sativus GN=Csa_3G355580 PE=4 SV=1[more]
A0A0A0L7A8_CUCSA1.2e-0751.61Uncharacterized protein OS=Cucumis sativus GN=Csa_3G355570 PE=4 SV=1[more]
M5W3S6_PRUPE2.7e-0767.39Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa025303mg PE=4 S... [more]
A0A068V9Z2_COFCA6.5e-0650.91Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00007930001 PE=4 SV=1[more]
BLAST of CSPI03G22090 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G44930.12.6e-0647.92 cation/H+ exchanger 10[more]
AT3G44920.11.0e-0547.92 cation/H+ exchanger 11[more]
BLAST of CSPI03G22090 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202735|gb|KGN57868.1|3.7e-34100.00hypothetical protein Csa_3G356580 [Cucumis sativus][more]
gi|449463487|ref|XP_004149465.1|1.1e-0958.06PREDICTED: cation/H(+) antiporter 12-like [Cucumis sativus][more]
gi|700202732|gb|KGN57865.1|1.7e-0751.61hypothetical protein Csa_3G355570 [Cucumis sativus][more]
gi|449463489|ref|XP_004149466.1|1.7e-0751.61PREDICTED: cation/H(+) antiporter 4-like [Cucumis sativus][more]
gi|645215532|ref|XP_008237001.1|3.8e-0767.39PREDICTED: cation/H(+) antiporter 4-like [Prunus mume][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0030001 metal ion transport
biological_process GO:0015672 monovalent inorganic cation transport
biological_process GO:0006885 regulation of pH
biological_process GO:0055085 transmembrane transport
cellular_component GO:0005575 cellular_component
molecular_function GO:0015299 solute:proton antiporter activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G22090.1CSPI03G22090.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR32468FAMILY NOT NAMEDcoord: 8..54
score: 9.1
NoneNo IPR availablePANTHERPTHR32468:SF17CATION/H(+) ANTIPORTER 10-RELATEDcoord: 8..54
score: 9.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI03G22090Csa3G356580Cucumber (Chinese Long) v2cpicuB120
CSPI03G22090CsaV3_3G021880Cucumber (Chinese Long) v3cpicucB153
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI03G22090Watermelon (97103) v2cpiwmbB226
CSPI03G22090Wax gourdcpiwgoB290
CSPI03G22090Cucumber (Gy14) v1cgycpiB299
CSPI03G22090Cucumber (Gy14) v1cgycpiB300
CSPI03G22090Cucurbita maxima (Rimu)cmacpiB328
CSPI03G22090Cucurbita maxima (Rimu)cmacpiB415
CSPI03G22090Cucurbita moschata (Rifu)cmocpiB319
CSPI03G22090Cucurbita moschata (Rifu)cmocpiB403
CSPI03G22090Melon (DHL92) v3.5.1cpimeB246
CSPI03G22090Watermelon (Charleston Gray)cpiwcgB243
CSPI03G22090Watermelon (97103) v1cpiwmB248
CSPI03G22090Cucurbita pepo (Zucchini)cpecpiB031
CSPI03G22090Cucurbita pepo (Zucchini)cpecpiB210
CSPI03G22090Bottle gourd (USVL1VR-Ls)cpilsiB216
CSPI03G22090Melon (DHL92) v3.6.1cpimedB244
CSPI03G22090Cucumber (Gy14) v2cgybcpiB110
CSPI03G22090Cucumber (Gy14) v2cgybcpiB119
CSPI03G22090Silver-seed gourdcarcpiB0572
CSPI03G22090Silver-seed gourdcarcpiB1025
CSPI03G22090Cucumber (Chinese Long) v3cpicucB144