CsaV3_3G020340 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G020340
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr3 : 16392085 .. 16395824 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGCTTAAGGTTCAAGGGGACTCAGCTCTGAATCGGTATGTTGTTTTTTACTTTTATCCTTTTTTTCTTATTATTGAAACATTGAATTTACAGGTTTGAAATACAAAAACCTCCTCACACATCCTTTTTTACTAGTTGGCTACAAAAAAGAATGAGAACTCTGTCTAATAAAAACACCAAGATGACCTATGTTTGCCACGAACTATCAGAATTCCTCTTTTTTTTGGTAGAGCTTAAAGCGGCGGGGCTACTTTTACTGATTCGTTAGAAGTATTGTACAATCTGAAACTCAAAATTTTGAAGCTTTTGAATGCATAGGTTTTAGTTTTGGCTTTTGGGGACTGGGAATAGTTTCCGTTATCCATCTTATTAAATTTTACTTCAACTAACTCTTACAAAACTTACTTTTATATCACGGAAGGATGAGTCTACCAATCACTTCATCAAAGTGGAATTTATGTCTTTTAGGATTTCTTTTGATGATTTATTAAGGGGAAGTGTGAAAATTAAGGAAAGAGGGAGAATTGTGGTTCTATTTCGTTTCAACTGGTTTCGGCTATCTAGAATGAGGACTGTCTATAGTGTATGCTAGATAACTCCAAACATAACTTATTTTCAAAACGAACAAGGTATAACAATTATATATTTTGATCAGGTCACATATTATTGTTGGAGAAATCCTTTTCAGAGTTGTTGAAATTTTCTTTCACGATTTTAACTGGAGTGAAAATTAGTATTTTCTAAGGTGGGCAAATGAAGATTTTATGATCCTTCTTAAAAAAATTTCCCACGAAATGGACACTGCTTTCCTTTAACAAGAAGCAATAAATAAAAAAAGTCAGTTTCAAAATGTTGAGAGAATAAAAGAGACTAATGCTCAAAGATACAAATTTCAGGAGAGAATGAGAAAAGAACTGAACAAAATACAAAAAGAACCATTACAAACCCATCAAAGCACAAATTACAGAGTTGAGTTGAGACACTTTAATCAAGCAAGAAGTTGCTAGGAAGGAAGGATCAAAATTTAGCTGTGATTTATCCTTGTGGACACCATAGAAATTAAGAAAATGTTGTTCCTTTTTTTTTTTTTTTGTGTCAGTATGTGTGTTGGGAGGGGGGGGGGGGGGGGGGGGGGGGGGAGGATAATGTACCAGACACTGAGGATTGAGAAGAGGTTAATAAAGTTATTGGCGATAGGAGGAAGGCTTGGAAAGACAACTAGAGAAGAAAAATTGGAGACGGGGTGATCAGTAAAATTATGAAGAAATTTGTGAGATGCGGAGAATAGAAAAACAATGGAGCAGAAAAATTGGAAAACTGATTAAAGGAAACATTGCAAGTCTTTCCATTAATGATTTCAAGTGGGAAATGGCTAATATTCTTACTAACACTCTGTTTTATAGTGGTTGGTACAACATTTGGTAACCTTTGAAGAACATGATTGATGAGGACAACATGCTGAATCTAGTTCGTCTTGGTATGGTATTTCATAAATTTGTGAGCAAAGCCTGCCCCACACGACCCTCTCTCCCCATAGTTGCCTCATTTCCGAGTTTGGATTTGACTAATCTAGTCACCTCTTCATTCACTGTCACTTTGCAAAGAGGTTTTAGAAGGAGATCTTCCTTTCTTTTGGTTGGTTCACTGCCCAACTGCCCAACCAAAAGACACTTATCACGCTCTCACTTATACTCACCGGTTATCCCTTTACAAAGCAAAAGAAAATCATGTGGATGCATAGATTCGTGCTTTCTTATGGATCACATGGAAGGGGAGAAACAAGTGCCTCTTCAAAGATAAGGGAAGCTCTTTTGATTGATATTTTGGAGTCTGATTCTATGTTCTCAATATCTTTCATGCTATGAGTTGGTGTAAATGCACATCTTTCTTTAATACATACACCCTTTTTTCCCTTTTTGACCAATTGGAGAAATCTTTCACAACTCCTCTAGCTGTCTTCAGCCCTTTTTTGTTCAAGGCAGACTATGAAATATTTGGGAAGAAAATTTCTATTAAGCTCTCTTTTTTTTCTTATTTAAATAAGTAGATTCTCACCTTTTTCACTTTTTTCTTTATATCAGTGAGTATCGATGTGAACCTATGCACACCTTGACTGATCTCACAGTATGACCTGTCTGATTCTATAATATTTGGGTGTTAAAACAAACTCATAGGATATTAATTACTAAGTAAATGACCACCATGGACTCAACGACCTCTAAGCTCTTTATTGAAACAATGTCTCTTTTTTACCACTAGGTTAACCATGATTGTTTATCCCGTTTCTTTTATGAAAGACCGTCAAGTTGCTGATATTCTTATGCATTCAGGGAGCTCTCTATCTCGTTCATTTGGGTTCATCTAGTACGACAGAGAAACAAAGGTTTTGACACTTTGTTCTTTACTAGAAGAGGTTTTTCTTGTAGATCATTGTTCCATTTTTTTTACTGGATTCCTCTCCTAAGGATTTGATTTTCTTGCTCATTTGGAAAGTGGATCCTAAAATAAGGTGAAGTTCTTGTTTCGGGATAAAAGGGAGAGTTTTGTGATGATTTTTCCCCTTCAATTTGTTGATAATGTGGTGAGAAGGGGCTGAGATACTTCAGAAGGTTATGTGGTTGGTTATATACTCATGTGGTCACTATACCCTTACATGTACCATTTATTCTTGTTCAAGAACCATTGATCAATACGGAACAGAATACAATGCTGAATGTCTTAGCTGTTTTATCATTGCTCTCCCATTTTCACCTTAGGCTCGAGATGGGGATGTCCACCTTCGGACTTGTTCGTCCATAATTTTTCTGTTTATCTTTTTTTCTAGACAACCCACCCTTCTCGGGAGTCTGATTCTATGTTCTCAATATGGAATGTAAAAATTCTGAATAACGTAGAGTTCTTTGGGTGACAAATTTTACATGGATTAGTTGGATCGGATCTTGACCAGAGAACCATAGGGAACCTAGATCCGATCATGTGAATTTGTGAGTATACTCTGCAGTCTGGCATGAGTTCTTTGAGGTGTTCAATTTTGAGCTTTGTTTGCTCTTAAAGTTGCAGGAAGTCAGGCGAGTAGCTTATCGTCCATATGCCATTTTGTGAAAAGATATGGCTGTTTTTGTGGCAGGCTTGGATGTTTGCTATTTTATGGGGGTTGAGGGGTGAAGAAATAAAAGAATTTTCATTGGATGTGAGGATTCTTATAGTGCGAATTTTGTTCTCTTGCTAGATTCTCTAGGCTTTGATTTTCAAGTTTCTTTTTTTTTTTTTTTCCCTCCGTCGTTATGTCATATTTCTCTTATTGGAACCCTTTTTTGTAGTTTGACTCCCTTTCCTGAGTTTTAAATTTTGCAAGTCCGTGTGTTCTTTTTTTTTTTTTTTTTTCTCTTCTTAATGAAAGTTAAGTTGATTATTTTGAGAGATGCAAATTCGTATCCAAATTAACTAACTTTTGCTCCAATATAAGTTTCCAAGCTCCCTGACTTCATCGCAAAAGGATTATGTAATATTGTTGTTTGTGCATTGAGATTTGTGGTATATGCCATAGGACCACACTCTTGGGAATTTGCTTTAATGGAGTTCTGAAGATTGAAGTCTTTCAACAGTATGAAGCTACCGCCTTGTTGTGTTGCCTTGACCTCGCATCCATGAGCTGCAAGACAAGTTTGGGGTCAAGGAGCGAGCATGCTAGCTGTTGGTTCATCTGTTTAGTTGCATCGTTGGTTCATCTTGCATAA

mRNA sequence

ATGGCGCTTAAGGTTCAAGGGGACTCAGCTCTGAATCGGACCACACTCTTGGGAATTTGCTTTAATGGAGTTCTGAAGATTGAAGTCTTTCAACAGTATGAAGCTACCGCCTTGTTGTGTTGCCTTGACCTCGCATCCATGAGCTGCAAGACAAGTTTGGGGTCAAGGAGCGAGCATGCTAGCTGTTGGTTCATCTGTTTAGTTGCATCGTTGGTTCATCTTGCATAA

Coding sequence (CDS)

ATGGCGCTTAAGGTTCAAGGGGACTCAGCTCTGAATCGGACCACACTCTTGGGAATTTGCTTTAATGGAGTTCTGAAGATTGAAGTCTTTCAACAGTATGAAGCTACCGCCTTGTTGTGTTGCCTTGACCTCGCATCCATGAGCTGCAAGACAAGTTTGGGGTCAAGGAGCGAGCATGCTAGCTGTTGGTTCATCTGTTTAGTTGCATCGTTGGTTCATCTTGCATAA

Protein sequence

MALKVQGDSALNRTTLLGICFNGVLKIEVFQQYEATALLCCLDLASMSCKTSLGSRSEHASCWFICLVASLVHLA
Homology
[Close]
BLAST of CsaV3_3G020340 vs. NCBI nr
Match: KGN57721.1 (hypothetical protein Csa_3G259710 [Cucumis sativus])

HSP 1 Score: 153.7 bits (387), Expect = 2.5e-34
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0 

Query: 1  MALKVQGDSALNRTTLLGICFNGVLKIEVFQQYEATALLCCLDLASMSCKTSLGSRSEHA 60
          MALKVQGDSALNRTTLLGICFNGVLKIEVFQQYEATALLCCLDLASMSCKTSLGSRSEHA
Sbjct: 1  MALKVQGDSALNRTTLLGICFNGVLKIEVFQQYEATALLCCLDLASMSCKTSLGSRSEHA 60

Query: 61 SCWFICLVASLVHLA 76
          SCWFICLVASLVHLA
Sbjct: 61 SCWFICLVASLVHLA 75

[Close]
BLAST of CsaV3_3G020340 vs. TrEMBL
Match: tr|A0A0A0LCD7|A0A0A0LCD7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G259710 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 1.7e-34
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0 

Query: 1  MALKVQGDSALNRTTLLGICFNGVLKIEVFQQYEATALLCCLDLASMSCKTSLGSRSEHA 60
          MALKVQGDSALNRTTLLGICFNGVLKIEVFQQYEATALLCCLDLASMSCKTSLGSRSEHA
Sbjct: 1  MALKVQGDSALNRTTLLGICFNGVLKIEVFQQYEATALLCCLDLASMSCKTSLGSRSEHA 60

Query: 61 SCWFICLVASLVHLA 76
          SCWFICLVASLVHLA
Sbjct: 61 SCWFICLVASLVHLA 75

The following BLAST results are available for this feature:
BLAST of CsaV3_3G020340 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN57721.12.5e-34100.00hypothetical protein Csa_3G259710 [Cucumis sativus][more]
BLAST of CsaV3_3G020340 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G020340 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G020340 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LCD7|A0A0A0LCD7_CUCSA1.7e-34100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G259710 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G020340.1CsaV3_3G020340.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_3G020340CSPI03G20400Wild cucumber (PI 183967)cpicucB144
CsaV3_3G020340ClCG05G012060Watermelon (Charleston Gray)cucwcgB241
CsaV3_3G020340Cla97C05G093970Watermelon (97103) v2cucwmbB220
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_3G020340Silver-seed gourdcarcucB0518
CsaV3_3G020340Silver-seed gourdcarcucB0801
CsaV3_3G020340Cucumber (Gy14) v2cgybcucB117
CsaV3_3G020340Cucumber (Gy14) v1cgycucB006
CsaV3_3G020340Cucurbita maxima (Rimu)cmacucB0281
CsaV3_3G020340Cucurbita maxima (Rimu)cmacucB0547
CsaV3_3G020340Cucurbita moschata (Rifu)cmocucB0272
CsaV3_3G020340Cucurbita moschata (Rifu)cmocucB0532
CsaV3_3G020340Cucurbita pepo (Zucchini)cpecucB0686
CsaV3_3G020340Cucurbita pepo (Zucchini)cpecucB0749
CsaV3_3G020340Bottle gourd (USVL1VR-Ls)cuclsiB231
CsaV3_3G020340Melon (DHL92) v3.5.1cucmeB249
CsaV3_3G020340Melon (DHL92) v3.6.1cucmedB235
CsaV3_3G020340Melon (DHL92) v3.6.1cucmedB237
CsaV3_3G020340Watermelon (97103) v1cucwmB256
CsaV3_3G020340Wax gourdcucwgoB274