CsaV3_3G019350 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G019350
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionDNA ligase 1
Locationchr3 : 15232256 .. 15234481 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAAAATTTCAAATGAACAACATAAAGATACTAAATGTAATTCACCAAGTACATATTACATTTATGAATATTGGTCACATATTGCCAAAGGAGTTTTGTATAATCTTCAACAATGAAGTGTATAATCTTCAACAATGAAAGAGGTTGAGTTTAGGTAAGGGTTCGATGTTTGGTTGATTGGTCTTGACTTAAGGATGAAGATGCCATCTTAGTTCTTACCTAACTACCTACCTAAGAATTTAAGTTGAAATTAAATCAGGTTTTAAGACAGTGGAAAAAAAGAGTGAAAAAAATAACAGCATGGATTGAAACTGACCAGCGACGACAAAGGCAAAGGCAAAAACAAGGTGCAAGTTTGGTTGACGGTAGGCTGGGAGGGCAAACGAAGGGGCTTGGTTGAAGAAATGAGAAGTATTCTTTTTTGAAACGGAGACAAGTCTATTAATAATAATAATAATAAGAGAGACTAATGCTCAAAGTACAAGAGAGTTATACAGAGATCTAAAGGGCCGAAATAGATACAAACAATAGCTAAATCAAAATAAAAAATAACAACGAGCTAAACAAAATCCTCTATTCTGGAAGCACAAATAAAATATAGAATGTAAACTAGGTAGAAAGTAATTAATTAAACCAGATGTCAAAAGGAATCCAAAGTAAGATGACCAAATGCCCACAATAAGTTTTGAGATGAGTGAAGAGGGAACACCAAGAGAACAACGAACAGCCTTGCTGAAACTTCACTAAGATAAAACCACAAAAACTGCTAAAAATAAGAAATTGTTCAACTGGTTGGAAACAGTTCTGGAGCCCAACTTCTTTTTTGATTCTTGTGAGAGTGCTAGTTCTGAATTAAGTGTTTTAAGAGACTTGAAAGCCAATCTCTTTATTTGCGACCTTCAAACCACACAAGTTTCGCTATACAAAAGTCCATTGCAACCGATTATTGAACGGAAAAGTGACTAGAGCCTGAAAGTCTGTGCCTTTAATATCTTCGTGTGTGAACATTTCATGATCAATCGGAGAACCTTCGAAATCTTTGCTGCTTACACTGAATGGTGAATGAAGCTCCAATTCTTTCTTTCTAAAAAATGGATGGGCCAACTGGGAGAGCCGAGGAACAAAGGGAGCTTTCTTTCTAAAAATTGAATGGGCCAACTGGGAGAGCCGAGGAGGAGGAAGAAGAGTTTCGCCTGTTGCCAAGGAGCAATGCCATTGATGGGTTTCCTCCTAGCCAATTTATTCAAGAAATGACTGAGCCAATTAACTTTAACTCAGATTTTGACTTACCTGGTCATTCTTCTGTTGAATTTCTTCCACCTCCCAGAGATGATAACCGAATGAGTTCTGGTGGATGTATGCCTTTTGTTAGTAACAAAAAGAGAGTGGCTGACCCTGATATCGACAACCCAACTCAATCTCTTAATGGCGGGAACAAGAGGTTAAGGAGCGAAGGTCCTCTTGACTATGATAAGTGTATGGATAACGTACAACAGTGGCTTAATACAGCAAGGATAATGTACGCAGAGAAAGAACAGGTTCATCAGCAGGCCACTATGAATCAGCAATACTTGCTTCATGAGCTGCAGCAGAGAGAGACCTTTATTGAACATTTGAGAAAGACAAAGTTTGAGGAGCAACAGAAGATGCAATCTGATATTTACCGGCTTGAGCGCGAGCTCTATGTTATGGGAAATCTATTGGACGGCTACAGAAAGGCATTGAGGGAAACAAACAAAGCATTTGCAGACTATAGGACCCAATGCTCACAATCTGATGAACCACTCTACAAAGATGTTGCTGGTTCTGGTGGTCTTGTTCTGAGCACCATGGAACTGGAAAGGATACGTTTGAAGCATGCAGAGGAAGATAGACTAAGCCGCTTAATTATTGAGAAGTTCAAAGCCTTGGAAGACAAGTTTGTTGACATATTTCATGCTCATCTGCAGCAGGTTAGTTTGTTGGATAGTAGGCTGCTTGAATTTGGAAATGAAGTGAAAACTCTGAGGGAATCACTTGAAAATAAGAAAGTTGCTGAAACTTCAGAATCCATTTCAAATGAATGATTCGATCCCCAGGACTCGGTGTGTATAGTTTAACTTTGAATCATGACTAGCTTGCTTCCATGGATGGTGTTTACTCTTTAAGTTTTGTGTCTCTGTTTGTGCAGATTCAAACTGGAAAGGTAGTCCATTTTTATCTTTTCGGTATATAACGGTTATTCT

mRNA sequence

ATGACTGAGCCAATTAACTTTAACTCAGATTTTGACTTACCTGGTCATTCTTCTGTTGAATTTCTTCCACCTCCCAGAGATGATAACCGAATGAGTTCTGGTGGATGTATGCCTTTTGTTAGTAACAAAAAGAGAGTGGCTGACCCTGATATCGACAACCCAACTCAATCTCTTAATGGCGGGAACAAGAGGTTAAGGAGCGAAGGTCCTCTTGACTATGATAAGTGTATGGATAACGTACAACAGTGGCTTAATACAGCAAGGATAATGTACGCAGAGAAAGAACAGGTTCATCAGCAGGCCACTATGAATCAGCAATACTTGCTTCATGAGCTGCAGCAGAGAGAGACCTTTATTGAACATTTGAGAAAGACAAAGTTTGAGGAGCAACAGAAGATGCAATCTGATATTTACCGGCTTGAGCGCGAGCTCTATGTTATGGGAAATCTATTGGACGGCTACAGAAAGGCATTGAGGGAAACAAACAAAGCATTTGCAGACTATAGGACCCAATGCTCACAATCTGATGAACCACTCTACAAAGATGTTGCTGGTTCTGGTGGTCTTGTTCTGAGCACCATGGAACTGGAAAGGATACGTTTGAAGCATGCAGAGGAAGATAGACTAAGCCGCTTAATTATTGAGAAGTTCAAAGCCTTGGAAGACAAGTTTGTTGACATATTTCATGCTCATCTGCAGCAGGTTAGTTTGTTGGATAGTAGGCTGCTTGAATTTGGAAATGAAGTGAAAACTCTGAGGGAATCACTTGAAAATAAGAAAGTTGCTGAAACTTCAGAATCCATTTCAAATGAATGA

Coding sequence (CDS)

ATGACTGAGCCAATTAACTTTAACTCAGATTTTGACTTACCTGGTCATTCTTCTGTTGAATTTCTTCCACCTCCCAGAGATGATAACCGAATGAGTTCTGGTGGATGTATGCCTTTTGTTAGTAACAAAAAGAGAGTGGCTGACCCTGATATCGACAACCCAACTCAATCTCTTAATGGCGGGAACAAGAGGTTAAGGAGCGAAGGTCCTCTTGACTATGATAAGTGTATGGATAACGTACAACAGTGGCTTAATACAGCAAGGATAATGTACGCAGAGAAAGAACAGGTTCATCAGCAGGCCACTATGAATCAGCAATACTTGCTTCATGAGCTGCAGCAGAGAGAGACCTTTATTGAACATTTGAGAAAGACAAAGTTTGAGGAGCAACAGAAGATGCAATCTGATATTTACCGGCTTGAGCGCGAGCTCTATGTTATGGGAAATCTATTGGACGGCTACAGAAAGGCATTGAGGGAAACAAACAAAGCATTTGCAGACTATAGGACCCAATGCTCACAATCTGATGAACCACTCTACAAAGATGTTGCTGGTTCTGGTGGTCTTGTTCTGAGCACCATGGAACTGGAAAGGATACGTTTGAAGCATGCAGAGGAAGATAGACTAAGCCGCTTAATTATTGAGAAGTTCAAAGCCTTGGAAGACAAGTTTGTTGACATATTTCATGCTCATCTGCAGCAGGTTAGTTTGTTGGATAGTAGGCTGCTTGAATTTGGAAATGAAGTGAAAACTCTGAGGGAATCACTTGAAAATAAGAAAGTTGCTGAAACTTCAGAATCCATTTCAAATGAATGA

Protein sequence

MTEPINFNSDFDLPGHSSVEFLPPPRDDNRMSSGGCMPFVSNKKRVADPDIDNPTQSLNGGNKRLRSEGPLDYDKCMDNVQQWLNTARIMYAEKEQVHQQATMNQQYLLHELQQRETFIEHLRKTKFEEQQKMQSDIYRLERELYVMGNLLDGYRKALRETNKAFADYRTQCSQSDEPLYKDVAGSGGLVLSTMELERIRLKHAEEDRLSRLIIEKFKALEDKFVDIFHAHLQQVSLLDSRLLEFGNEVKTLRESLENKKVAETSESISNE
Homology
[Close]
BLAST of CsaV3_3G019350 vs. NCBI nr
Match: XP_008456415.1 (PREDICTED: DNA ligase 1 [Cucumis melo])

HSP 1 Score: 493.4 bits (1269), Expect = 4.8e-136
Identity = 252/271 (92.99%), Postives = 259/271 (95.57%), Query Frame = 0 

Query: 2   TEPINFNSDFDLPGHSSVEFLPPPRDDNRMSSGGCMPFVSNKKRVADPDIDNPTQSLNGG 61
           TEPINFNS+FDL GHSSVEFLPPPRDDNRMSSGGC+PFVSN KRV DPDIDNP QSLNGG
Sbjct: 547 TEPINFNSEFDLQGHSSVEFLPPPRDDNRMSSGGCIPFVSNNKRVIDPDIDNPAQSLNGG 606

Query: 62  NKRLRSEGPLDYDKCMDNVQQWLNTARIMYAEKEQVHQQATMNQQYLLHELQQRETFIEH 121
           NKRLRSEGPLDYDKCMDNVQQWL+ AR+MYAEKEQVHQQATMNQQYLLHELQQRETFIEH
Sbjct: 607 NKRLRSEGPLDYDKCMDNVQQWLDKARMMYAEKEQVHQQATMNQQYLLHELQQRETFIEH 666

Query: 122 LRKTKFEEQQKMQSDIYRLERELYVMGNLLDGYRKALRETNKAFADYRTQCSQSDEPLYK 181
           LRKTKFEEQQKMQSDIYRLERELYVMGNLLDGYRKALRETNKAFADYRT+C QSDEPLYK
Sbjct: 667 LRKTKFEEQQKMQSDIYRLERELYVMGNLLDGYRKALRETNKAFADYRTRCPQSDEPLYK 726

Query: 182 DVAGSGGLVLSTMELERIRLKHAEEDRLSRLIIE-KFKALEDKFVDIFHAHLQQVSLLDS 241
           DVAGSGGLVLSTMELERIRLK AEEDRLSRL+IE KFKALEDKFVDIFHAHLQQVS LDS
Sbjct: 727 DVAGSGGLVLSTMELERIRLKQAEEDRLSRLVIEKKFKALEDKFVDIFHAHLQQVSSLDS 786

Query: 242 RLLEFGNEVKTLRESLENKKVAETSESISNE 272
           RLLEFGNEVKTLRESL NKK +ETSE ISNE
Sbjct: 787 RLLEFGNEVKTLRESLANKKASETSEPISNE 817

[Close]
BLAST of CsaV3_3G019350 vs. NCBI nr
Match: XP_022944095.1 (trichohyalin-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 463.4 bits (1191), Expect = 5.4e-127
Identity = 236/271 (87.08%), Postives = 253/271 (93.36%), Query Frame = 0 

Query: 2   TEPINFNSDFDLPGHSSVEFLPPPRDDNRMSSGGCMPFVSNKKRVADPDIDNPTQSLNGG 61
           TEPINFNS+F+L  HS VEFL PPRDD+RMSSGGCMPFV++ KRV DPDIDNP QSLNGG
Sbjct: 589 TEPINFNSEFELRDHSPVEFL-PPRDDSRMSSGGCMPFVNSNKRVIDPDIDNPAQSLNGG 648

Query: 62  NKRLRSEGPLDYDKCMDNVQQWLNTARIMYAEKEQVHQQATMNQQYLLHELQQRETFIEH 121
           NKRLRSEGPLDYDKCMDNVQQWL+ ARIMYAEKEQVHQQATMNQQYLLHELQQRETFIEH
Sbjct: 649 NKRLRSEGPLDYDKCMDNVQQWLDKARIMYAEKEQVHQQATMNQQYLLHELQQRETFIEH 708

Query: 122 LRKTKFEEQQKMQSDIYRLERELYVMGNLLDGYRKALRETNKAFADYRTQCSQSDEPLYK 181
           LRKTKFEEQQKMQSDIYRLERELYVMGNLLDGYRKA+RET+KAFA+YR++C Q DEPLYK
Sbjct: 709 LRKTKFEEQQKMQSDIYRLERELYVMGNLLDGYRKAMRETHKAFAEYRSRCPQPDEPLYK 768

Query: 182 DVAGSGGLVLSTMELERIRLKHAEEDRLSRLIIE-KFKALEDKFVDIFHAHLQQVSLLDS 241
           DVAGSGGLVLSTMELERIRLK AEEDRL+RL+IE KFKALEDKFVD+FHAHLQQVS LDS
Sbjct: 769 DVAGSGGLVLSTMELERIRLKQAEEDRLNRLVIEKKFKALEDKFVDVFHAHLQQVSSLDS 828

Query: 242 RLLEFGNEVKTLRESLENKKVAETSESISNE 272
           RLL+FGNEVKTLRES  N+K  ETSE +SNE
Sbjct: 829 RLLDFGNEVKTLRESFANRKAPETSEPVSNE 858

[Close]
BLAST of CsaV3_3G019350 vs. NCBI nr
Match: XP_022944096.1 (trichohyalin-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 463.4 bits (1191), Expect = 5.4e-127
Identity = 236/271 (87.08%), Postives = 253/271 (93.36%), Query Frame = 0 

Query: 2   TEPINFNSDFDLPGHSSVEFLPPPRDDNRMSSGGCMPFVSNKKRVADPDIDNPTQSLNGG 61
           TEPINFNS+F+L  HS VEFL PPRDD+RMSSGGCMPFV++ KRV DPDIDNP QSLNGG
Sbjct: 579 TEPINFNSEFELRDHSPVEFL-PPRDDSRMSSGGCMPFVNSNKRVIDPDIDNPAQSLNGG 638

Query: 62  NKRLRSEGPLDYDKCMDNVQQWLNTARIMYAEKEQVHQQATMNQQYLLHELQQRETFIEH 121
           NKRLRSEGPLDYDKCMDNVQQWL+ ARIMYAEKEQVHQQATMNQQYLLHELQQRETFIEH
Sbjct: 639 NKRLRSEGPLDYDKCMDNVQQWLDKARIMYAEKEQVHQQATMNQQYLLHELQQRETFIEH 698

Query: 122 LRKTKFEEQQKMQSDIYRLERELYVMGNLLDGYRKALRETNKAFADYRTQCSQSDEPLYK 181
           LRKTKFEEQQKMQSDIYRLERELYVMGNLLDGYRKA+RET+KAFA+YR++C Q DEPLYK
Sbjct: 699 LRKTKFEEQQKMQSDIYRLERELYVMGNLLDGYRKAMRETHKAFAEYRSRCPQPDEPLYK 758

Query: 182 DVAGSGGLVLSTMELERIRLKHAEEDRLSRLIIE-KFKALEDKFVDIFHAHLQQVSLLDS 241
           DVAGSGGLVLSTMELERIRLK AEEDRL+RL+IE KFKALEDKFVD+FHAHLQQVS LDS
Sbjct: 759 DVAGSGGLVLSTMELERIRLKQAEEDRLNRLVIEKKFKALEDKFVDVFHAHLQQVSSLDS 818

Query: 242 RLLEFGNEVKTLRESLENKKVAETSESISNE 272
           RLL+FGNEVKTLRES  N+K  ETSE +SNE
Sbjct: 819 RLLDFGNEVKTLRESFANRKAPETSEPVSNE 848

[Close]
BLAST of CsaV3_3G019350 vs. NCBI nr
Match: XP_023512630.1 (trichohyalin-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 463.4 bits (1191), Expect = 5.4e-127
Identity = 236/271 (87.08%), Postives = 253/271 (93.36%), Query Frame = 0 

Query: 2   TEPINFNSDFDLPGHSSVEFLPPPRDDNRMSSGGCMPFVSNKKRVADPDIDNPTQSLNGG 61
           TEPINFNS+F+L  HS VEFL PPRDD+RMSSGGCMPFV++ KRV DPDIDNP QSLNGG
Sbjct: 595 TEPINFNSEFELRDHSPVEFL-PPRDDSRMSSGGCMPFVNSNKRVIDPDIDNPAQSLNGG 654

Query: 62  NKRLRSEGPLDYDKCMDNVQQWLNTARIMYAEKEQVHQQATMNQQYLLHELQQRETFIEH 121
           NKRLRSEGPLDYDKCMDNVQQWL+ ARIMYAEKEQVHQQATMNQQYLLHELQQRETFIEH
Sbjct: 655 NKRLRSEGPLDYDKCMDNVQQWLDKARIMYAEKEQVHQQATMNQQYLLHELQQRETFIEH 714

Query: 122 LRKTKFEEQQKMQSDIYRLERELYVMGNLLDGYRKALRETNKAFADYRTQCSQSDEPLYK 181
           LRKTKFEEQQKMQSDIYRLERELYVMGNLLDGYRKA+RET+KAFA+YR++C Q DEPLYK
Sbjct: 715 LRKTKFEEQQKMQSDIYRLERELYVMGNLLDGYRKAMRETHKAFAEYRSRCPQPDEPLYK 774

Query: 182 DVAGSGGLVLSTMELERIRLKHAEEDRLSRLIIE-KFKALEDKFVDIFHAHLQQVSLLDS 241
           DVAGSGGLVLSTMELERIRLK AEEDRL+RL+IE KFKALEDKFVD+FHAHLQQVS LDS
Sbjct: 775 DVAGSGGLVLSTMELERIRLKQAEEDRLNRLVIEKKFKALEDKFVDVFHAHLQQVSSLDS 834

Query: 242 RLLEFGNEVKTLRESLENKKVAETSESISNE 272
           RLL+FGNEVKTLRES  N+K  ETSE +SNE
Sbjct: 835 RLLDFGNEVKTLRESFANRKAPETSEPVSNE 864

[Close]
BLAST of CsaV3_3G019350 vs. NCBI nr
Match: KGN57612.1 (hypothetical protein Csa_3G229380 [Cucumis sativus])

HSP 1 Score: 462.6 bits (1189), Expect = 9.2e-127
Identity = 230/234 (98.29%), Postives = 233/234 (99.57%), Query Frame = 0 

Query: 1   MTEPINFNSDFDLPGHSSVEFLPPPRDDNRMSSGGCMPFVSNKKRVADPDIDNPTQSLNG 60
           MTEPINFNSDFDLPGHSSVEFLPPPRDDNRMSSGGCMPFVSNKKRVADPDIDNPTQSLNG
Sbjct: 1   MTEPINFNSDFDLPGHSSVEFLPPPRDDNRMSSGGCMPFVSNKKRVADPDIDNPTQSLNG 60

Query: 61  GNKRLRSEGPLDYDKCMDNVQQWLNTARIMYAEKEQVHQQATMNQQYLLHELQQRETFIE 120
           GNKRLRSEGPLDYDKCMDNVQQWL+ AR+MYAEKEQVHQQATMNQQYLLHELQQRETFIE
Sbjct: 61  GNKRLRSEGPLDYDKCMDNVQQWLDKARMMYAEKEQVHQQATMNQQYLLHELQQRETFIE 120

Query: 121 HLRKTKFEEQQKMQSDIYRLERELYVMGNLLDGYRKALRETNKAFADYRTQCSQSDEPLY 180
           HLRKTK+EEQQKMQSDIYRLERELYVMGNLLDGYRKALRETNKAFADYRTQCSQSDEPLY
Sbjct: 121 HLRKTKYEEQQKMQSDIYRLERELYVMGNLLDGYRKALRETNKAFADYRTQCSQSDEPLY 180

Query: 181 KDVAGSGGLVLSTMELERIRLKHAEEDRLSRLIIEKFKALEDKFVDIFHAHLQQ 235
           KDVAGSGGLVLSTMELERIRLKHAEEDRLSRLIIEKFKALEDKFVDIFHAHLQQ
Sbjct: 181 KDVAGSGGLVLSTMELERIRLKHAEEDRLSRLIIEKFKALEDKFVDIFHAHLQQ 234

[Close]
BLAST of CsaV3_3G019350 vs. TAIR10
Match: AT3G58110.1 (unknown protein)

HSP 1 Score: 178.7 bits (452), Expect = 4.8e-45
Identity = 109/274 (39.78%), Postives = 164/274 (59.85%), Query Frame = 0 

Query: 4   PINFNSDFDLPGHSSVEFLPPPRDDNRMSSGGCMPFV---SNKKRVADPDIDNPTQSLNG 63
           P+ +NS   + G+S        R +  M+ G     +    N KR  + +      S N 
Sbjct: 498 PLGYNSGLQIHGNSIGGDFLASRGEMHMAMGSGSSSLFGNGNNKREIEHENGITYHSHNP 557

Query: 64  GNKRLRSEGPL------DYDKCMDNVQQWLNTARIMYAEKEQVHQQATMNQQYLLHELQQ 123
            NKRLR+E P         D C+D +  W   AR+ +AEK++  +Q+ +NQQYL++ELQ 
Sbjct: 558 INKRLRTEEPSWDEKPPPVDMCLDQMAYWAEKARLSFAEKDREREQSVINQQYLMNELQS 617

Query: 124 RETFIEHLRKTKFEEQQKMQSDIYRLERELYVMGNLLDGYRKALRETNKAFADYRTQCS- 183
           +   I+ L +TKFEEQQ+    IY+LE EL +M ++++GYRKAL+ T KA  ++R +C  
Sbjct: 618 KTAMIQELERTKFEEQQRKDIMIYKLESELRMMTSVVEGYRKALKITQKASREHRKRCPL 677

Query: 184 QSDEPLYKDVAGSGGLVLSTMELERIRLKHAEEDRLSRLIIEK-FKALEDKFVDIFHAHL 243
           + D+ +Y DV GSGGLVLST E+E++RLK  EEDR+ R++ ++     E  +++ F  H+
Sbjct: 678 RDDKQVYMDVKGSGGLVLSTTEIEKLRLKQEEEDRMQRVLAKRQIDDFEHNWLNKFEEHM 737

Query: 244 QQVSLLDSRLLEFGNEVKTLRESLENKKVAETSE 267
           + V LL+ RL+E  +EVK LRE+L   K  ETSE
Sbjct: 738 EAVELLNERLIENEDEVKILRETLSESKNIETSE 771

[Close]
BLAST of CsaV3_3G019350 vs. TAIR10
Match: AT2G42370.1 (unknown protein)

HSP 1 Score: 104.0 bits (258), Expect = 1.5e-22
Identity = 78/270 (28.89%), Postives = 134/270 (49.63%), Query Frame = 0 

Query: 2   TEPINFNSDFDLPGHSSVEFLPPPRDDNRMSSGGCMPFVSNKKRVADPD-----IDNPTQ 61
           T  + +NS   + G S+ +FL  PR    M  G       NK+     +      DNP  
Sbjct: 440 TSTLGYNSGLQVHGSSTCDFL-APRAVMHMVPGRSHFGNDNKREFGHENDISYHFDNPAS 499

Query: 62  SLNGGNKRLRS----EGPLDYDKCMDNVQQWLNTARIMYAEKEQVHQQATMNQQYLLHEL 121
           +     KRL++    + P+ +D CM+ ++   + A++ Y EK+Q   ++ M +Q L +EL
Sbjct: 500 T-----KRLKTPSWDDKPVPFDICMEQIKHLADKAKLSYVEKDQACGESNMREQMLQNEL 559

Query: 122 QQRETFIEHLRKTKFEEQQKMQSDIYRLERELYVMGNLLDGYRKALRETNKAFADYRTQC 181
           Q+RE  I+ L K  +EE  K           L +M                         
Sbjct: 560 QRREDIIQQLHKESYEELHKKNVXXXXXXXXLRMMTXXXXXXXXXXXXXXXXXXXXXXXX 619

Query: 182 SQSDEPLYKDVAGSGGLVLSTMELERIRLKHAEEDRLSRLIIEK-FKALEDKFVDIFHAH 241
              D+P+Y DV G+GGLVLST E+E++RLK  +E+ + R++IE+  K +   ++  +  +
Sbjct: 620 PLLDKPIYIDVKGTGGLVLSTAEIEKLRLKEEKEEGMRRVLIERQVKEVGSLWIKEYEVN 679

Query: 242 L-QQVSLLDSRLLEFGNEVKTLRESLENKK 261
           L ++V LLD +L+ F N++K L+E++  ++
Sbjct: 680 LKKKVELLDGKLIGFQNKMKLLKETISRRE 703

[Close]
BLAST of CsaV3_3G019350 vs. TrEMBL
Match: tr|A0A1S3C2S1|A0A1S3C2S1_CUCME (DNA ligase 1 OS=Cucumis melo OX=3656 GN=LOC103496363 PE=4 SV=1)

HSP 1 Score: 493.4 bits (1269), Expect = 3.2e-136
Identity = 252/271 (92.99%), Postives = 259/271 (95.57%), Query Frame = 0 

Query: 2   TEPINFNSDFDLPGHSSVEFLPPPRDDNRMSSGGCMPFVSNKKRVADPDIDNPTQSLNGG 61
           TEPINFNS+FDL GHSSVEFLPPPRDDNRMSSGGC+PFVSN KRV DPDIDNP QSLNGG
Sbjct: 547 TEPINFNSEFDLQGHSSVEFLPPPRDDNRMSSGGCIPFVSNNKRVIDPDIDNPAQSLNGG 606

Query: 62  NKRLRSEGPLDYDKCMDNVQQWLNTARIMYAEKEQVHQQATMNQQYLLHELQQRETFIEH 121
           NKRLRSEGPLDYDKCMDNVQQWL+ AR+MYAEKEQVHQQATMNQQYLLHELQQRETFIEH
Sbjct: 607 NKRLRSEGPLDYDKCMDNVQQWLDKARMMYAEKEQVHQQATMNQQYLLHELQQRETFIEH 666

Query: 122 LRKTKFEEQQKMQSDIYRLERELYVMGNLLDGYRKALRETNKAFADYRTQCSQSDEPLYK 181
           LRKTKFEEQQKMQSDIYRLERELYVMGNLLDGYRKALRETNKAFADYRT+C QSDEPLYK
Sbjct: 667 LRKTKFEEQQKMQSDIYRLERELYVMGNLLDGYRKALRETNKAFADYRTRCPQSDEPLYK 726

Query: 182 DVAGSGGLVLSTMELERIRLKHAEEDRLSRLIIE-KFKALEDKFVDIFHAHLQQVSLLDS 241
           DVAGSGGLVLSTMELERIRLK AEEDRLSRL+IE KFKALEDKFVDIFHAHLQQVS LDS
Sbjct: 727 DVAGSGGLVLSTMELERIRLKQAEEDRLSRLVIEKKFKALEDKFVDIFHAHLQQVSSLDS 786

Query: 242 RLLEFGNEVKTLRESLENKKVAETSESISNE 272
           RLLEFGNEVKTLRESL NKK +ETSE ISNE
Sbjct: 787 RLLEFGNEVKTLRESLANKKASETSEPISNE 817

[Close]
BLAST of CsaV3_3G019350 vs. TrEMBL
Match: tr|A0A0A0LAE3|A0A0A0LAE3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G229380 PE=4 SV=1)

HSP 1 Score: 462.6 bits (1189), Expect = 6.1e-127
Identity = 230/234 (98.29%), Postives = 233/234 (99.57%), Query Frame = 0 

Query: 1   MTEPINFNSDFDLPGHSSVEFLPPPRDDNRMSSGGCMPFVSNKKRVADPDIDNPTQSLNG 60
           MTEPINFNSDFDLPGHSSVEFLPPPRDDNRMSSGGCMPFVSNKKRVADPDIDNPTQSLNG
Sbjct: 1   MTEPINFNSDFDLPGHSSVEFLPPPRDDNRMSSGGCMPFVSNKKRVADPDIDNPTQSLNG 60

Query: 61  GNKRLRSEGPLDYDKCMDNVQQWLNTARIMYAEKEQVHQQATMNQQYLLHELQQRETFIE 120
           GNKRLRSEGPLDYDKCMDNVQQWL+ AR+MYAEKEQVHQQATMNQQYLLHELQQRETFIE
Sbjct: 61  GNKRLRSEGPLDYDKCMDNVQQWLDKARMMYAEKEQVHQQATMNQQYLLHELQQRETFIE 120

Query: 121 HLRKTKFEEQQKMQSDIYRLERELYVMGNLLDGYRKALRETNKAFADYRTQCSQSDEPLY 180
           HLRKTK+EEQQKMQSDIYRLERELYVMGNLLDGYRKALRETNKAFADYRTQCSQSDEPLY
Sbjct: 121 HLRKTKYEEQQKMQSDIYRLERELYVMGNLLDGYRKALRETNKAFADYRTQCSQSDEPLY 180

Query: 181 KDVAGSGGLVLSTMELERIRLKHAEEDRLSRLIIEKFKALEDKFVDIFHAHLQQ 235
           KDVAGSGGLVLSTMELERIRLKHAEEDRLSRLIIEKFKALEDKFVDIFHAHLQQ
Sbjct: 181 KDVAGSGGLVLSTMELERIRLKHAEEDRLSRLIIEKFKALEDKFVDIFHAHLQQ 234

[Close]
BLAST of CsaV3_3G019350 vs. TrEMBL
Match: tr|A0A2P4IF90|A0A2P4IF90_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_60171 PE=4 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 4.4e-69
Identity = 148/271 (54.61%), Postives = 192/271 (70.85%), Query Frame = 0 

Query: 7   FNSDFDLPGHSSVEFLPPPRDDNRMSSGGCMPFVSNKKRVADPDIDNPTQSLNGGNKRLR 66
           F+S  ++  H + +FL   RDD R+ S G   F +  KR  D + DN   S NGGNKRLR
Sbjct: 588 FSSGLEIRDHLAGDFL-SSRDDGRLLSAGTSLFGNANKRGIDHENDNIHNSFNGGNKRLR 647

Query: 67  SEG-----PLDYDKCMDNVQQWLNTARIMYAEKEQVHQQATMNQQYLLHELQQRETFIEH 126
           S+G       D+D CM+ +Q W+   R MYA KEQ   +AT+NQQ+LL ELQQRET I+H
Sbjct: 648 SDGSWDGKATDFDMCMEQIQHWMGKTRTMYAAKEQACAEATVNQQFLLSELQQRETMIDH 707

Query: 127 LRKTKFEEQQKMQSDIYRLERELYVMGNLLDGYRKALRETNKAFADYRTQCSQSDEPLYK 186
           LR  KFEEQQK Q ++YRLEREL++MGNLL+GYRKAL+ET++AF++YR +C Q +EPLYK
Sbjct: 708 LRTVKFEEQQKRQVEVYRLERELFLMGNLLEGYRKALKETSRAFSEYRARCPQPEEPLYK 767

Query: 187 DVAGSGGLVLSTMELERIRLKHAEEDRLSRLIIE-KFKALEDKFVDIFHAHLQQVSLLDS 246
           DV GSGGLVLSTMELE+ RLK  EEDR++RL+IE K K  E  +V  F +H + V+LL +
Sbjct: 768 DVPGSGGLVLSTMELEKRRLKQEEEDRMNRLVIERKVKDFEGGWVRKFESHSEAVNLLGN 827

Query: 247 RLLEFGNEVKTLRESLENKKVAETSESISNE 272
           RLL+  N VK ++ES   ++V+ETSE   NE
Sbjct: 828 RLLDVENGVKLVKESFAKRRVSETSEGAPNE 857

[Close]
BLAST of CsaV3_3G019350 vs. TrEMBL
Match: tr|A0A2I4EYI4|A0A2I4EYI4_9ROSI (uncharacterized protein LOC108993875 OS=Juglans regia OX=51240 GN=LOC108993875 PE=4 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 4.6e-66
Identity = 145/271 (53.51%), Postives = 194/271 (71.59%), Query Frame = 0 

Query: 7   FNSDFDLPGHSSVEFLPPPRDDNRMSSGGCMPFVSNKKRVADPDIDNPTQSLNGGNKRLR 66
           F++  +L  HS+ +FL   R DN M +G    F +  K+  D + D    SLNGG+KRLR
Sbjct: 584 FSTGLELRDHSAGDFL-SSRVDNGMIAGSSSLFGNANKKGLDHENDGIHHSLNGGHKRLR 643

Query: 67  SEGP-----LDYDKCMDNVQQWLNTARIMYAEKEQVHQQATMNQQYLLHELQQRETFIEH 126
           S+GP      D+D CM+ VQ W+  AR+MYA KEQ  ++AT+NQQ LL+EL+QR+  IEH
Sbjct: 644 SDGPWDGKEADFDMCMEQVQHWVGKARMMYAAKEQACEEATVNQQILLNELEQRDRIIEH 703

Query: 127 LRKTKFEEQQKMQSDIYRLERELYVMGNLLDGYRKALRETNKAFADYRTQCSQSDEPLYK 186
           +R  K+EEQQK Q ++YRL+REL +M NLL+GYRKAL+E+++AFA+YR++  Q +EPLYK
Sbjct: 704 IRTAKYEEQQKKQVEVYRLDRELCMMANLLEGYRKALKESDRAFAEYRSRFPQPEEPLYK 763

Query: 187 DVAGSGGLVLSTMELERIRLKHAEEDRLSRLIIE-KFKALEDKFVDIFHAHLQQVSLLDS 246
           DV GSGGLVLST ELE+ RLK AEEDR++RL+IE KFK +E +    F AH Q V LL +
Sbjct: 764 DVPGSGGLVLSTFELEKQRLKQAEEDRITRLVIEKKFKDVEAEVNSKFEAHFQGVDLLGN 823

Query: 247 RLLEFGNEVKTLRESLENKKVAETSESISNE 272
           RLL+  N VK L+ES+  +KV+ETSE   +E
Sbjct: 824 RLLDVENGVKVLKESIAKRKVSETSEGTPDE 853

[Close]
BLAST of CsaV3_3G019350 vs. TrEMBL
Match: tr|A0A2N9J368|A0A2N9J368_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS59524 PE=4 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 1.7e-65
Identity = 144/270 (53.33%), Postives = 188/270 (69.63%), Query Frame = 0 

Query: 7   FNSDFDLPGHSSVEFLPPP-----RDDNRMSSGGCMPFVSNKKRVADPDIDNPTQSLNGG 66
           F+S  ++   S+ +FL        RDD+RM S G   F +  KR  D + DN   SLNGG
Sbjct: 467 FSSGLEIRDLSAGQFLSSRDDLSCRDDSRMLSAGTSLFGNANKRGIDHENDNIHNSLNGG 526

Query: 67  NKRLRSEGP-----LDYDKCMDNVQQWLNTARIMYAEKEQVHQQATMNQQYLLHELQQRE 126
           NKRLRS+G       D+D CM+ +Q W+   R+MYA KE   ++A +NQQ LL+ELQQR+
Sbjct: 527 NKRLRSDGQWDGKVADFDMCMEQIQHWMGKTRMMYAAKEHACEEANVNQQLLLNELQQRD 586

Query: 127 TFIEHLRKTKFEEQQKMQSDIYRLERELYVMGNLLDGYRKALRETNKAFADYRTQCSQSD 186
           + I+HLR  KFEEQQK Q ++YRLERELY+MGNLL+GYRKAL+ET++AF++YR +C Q +
Sbjct: 587 SMIDHLRTAKFEEQQKRQVEVYRLERELYLMGNLLEGYRKALKETHRAFSEYRARCPQPE 646

Query: 187 EPLYKDVAGSGGLVLSTMELERIRLKHAEEDRLSRLIIE-KFKALEDKFVDIFHAHLQQV 246
           EPLYKDV GSGGLVLSTMELE+  LK  EEDR++RL+IE K K  E  ++  F AH + V
Sbjct: 647 EPLYKDVPGSGGLVLSTMELEKRCLKQEEEDRMNRLLIEKKVKDFEVGWISKFEAHFEGV 706

Query: 247 SLLDSRLLEFGNEVKTLRESLENKKVAETS 266
            LL  RLL+  N VK  +ESL  ++V+ETS
Sbjct: 707 DLLGDRLLDVENGVKLAKESLAKRRVSETS 736

The following BLAST results are available for this feature:
BLAST of CsaV3_3G019350 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008456415.14.8e-13692.99PREDICTED: DNA ligase 1 [Cucumis melo][more]
XP_022944095.15.4e-12787.08trichohyalin-like isoform X1 [Cucurbita moschata][more]
XP_022944096.15.4e-12787.08trichohyalin-like isoform X2 [Cucurbita moschata][more]
XP_023512630.15.4e-12787.08trichohyalin-like [Cucurbita pepo subsp. pepo][more]
KGN57612.19.2e-12798.29hypothetical protein Csa_3G229380 [Cucumis sativus][more]
BLAST of CsaV3_3G019350 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G58110.14.8e-4539.78unknown protein[more]
AT2G42370.11.5e-2228.89unknown protein[more]
BLAST of CsaV3_3G019350 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G019350 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3C2S1|A0A1S3C2S1_CUCME3.2e-13692.99DNA ligase 1 OS=Cucumis melo OX=3656 GN=LOC103496363 PE=4 SV=1[more]
tr|A0A0A0LAE3|A0A0A0LAE3_CUCSA6.1e-12798.29Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G229380 PE=4 SV=1[more]
tr|A0A2P4IF90|A0A2P4IF90_QUESU4.4e-6954.61Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_60171 PE=4 SV=1[more]
tr|A0A2I4EYI4|A0A2I4EYI4_9ROSI4.6e-6653.51uncharacterized protein LOC108993875 OS=Juglans regia OX=51240 GN=LOC108993875 P... [more]
tr|A0A2N9J368|A0A2N9J368_FAGSY1.7e-6553.33Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS59524 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G019350.1CsaV3_3G019350.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..70
NoneNo IPR availablePANTHERPTHR35120:SF2SUBFAMILY NOT NAMEDcoord: 4..269
NoneNo IPR availablePANTHERPTHR35120FAMILY NOT NAMEDcoord: 4..269

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_3G019350CSPI03G19270Wild cucumber (PI 183967)cpicucB144
CsaV3_3G019350Cucsa.032700Cucumber (Gy14) v1cgycucB006
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_3G019350Silver-seed gourdcarcucB0048
CsaV3_3G019350Silver-seed gourdcarcucB0687
CsaV3_3G019350Cucumber (Gy14) v2cgybcucB117
CsaV3_3G019350Cucurbita maxima (Rimu)cmacucB0373
CsaV3_3G019350Cucurbita maxima (Rimu)cmacucB0829
CsaV3_3G019350Cucurbita moschata (Rifu)cmocucB0370
CsaV3_3G019350Cucurbita moschata (Rifu)cmocucB0814
CsaV3_3G019350Cucurbita pepo (Zucchini)cpecucB0247
CsaV3_3G019350Cucurbita pepo (Zucchini)cpecucB0484
CsaV3_3G019350Bottle gourd (USVL1VR-Ls)cuclsiB230
CsaV3_3G019350Melon (DHL92) v3.5.1cucmeB247
CsaV3_3G019350Melon (DHL92) v3.6.1cucmedB246
CsaV3_3G019350Watermelon (Charleston Gray)cucwcgB238
CsaV3_3G019350Watermelon (97103) v1cucwmB252
CsaV3_3G019350Watermelon (97103) v2cucwmbB217
CsaV3_3G019350Wax gourdcucwgoB287