CsaV3_3G018630 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G018630
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr3 : 14350400 .. 14351237 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGTCAAGAGTTCCCCAAACAACTCCCGACGTCGCTCAATGTGTGTCGGGAGTTTCCAAATAATCATGACGTCGTTCAATATGCGTCGAGAGTTCCCAAACATCTCCTAACACTTACTAGTATTGTTGGGAATTGGCCTCCATGTCACAACGTCTCCCAACACTGCGTCGAAAGTTTTCAAACAAATCTCAACGCTTTAGTTGTGCGTTGTGCGTCGAAAGATACTATATCTCCTACCACTCCAATTGGAATGTCGGGAGATGTCCTATCTCTCAATGACCTTTCTTCCAACTAGAGGGGTAAGAATATGGGTTGAACCCGAATAACTTGGACTACTCAACCCATATTATAAGGGCTGGATTGGGTTGGATTGAAAATTTTGGTTATTTTCGGATTGGGTTGGGTCTCAGATTGGAGGGTTGAAAATTTTAGTTCAACCCAACCCAACCCGAATTAATATAATATAATATAATATATATTATATTTTTTATTTTATTTTATTTAATATTTAAAAACAATTAGGTAGAAAAAGAAATCCAACGCACATTCCTACTTCCTTTCCACTTTCTCTTTCCTGATTCCTCTTTCTCCATTTCACGATTTCTTCTCCTCTCCGCCATTTCTCATCTGAAATTTCACTATCTCAGTTCGTCTTCTTCCTTTCCTCTCCATCGTATCTTAGTTCATCTTCTTCCTCTCCCCTCCTCCGTATCTCACCAGTCGTCTTCGTCTCTGACTTTGCTCATTCGCCTTCGCTTCTGACTTTGGCCATTCGTCTTCACCGTCAGCGTCCTCCCTCTCCTTGTCGTTTGTTTCCTCGTTGTCCGTCTCCTTAG

mRNA sequence

ATGCGTCAAGAGTTCCCCAAACAACTCCCGACGTCGCTCAATGTGTGTCGGGAGTTTCCAAATAATCATGACGTCGTTCAATATGCGTCGAGAGTTCCCAAACATCTCCTAACACTTACTAGTATTGTTGGGAATTGGCCTCCATGTCACAACGTCTCCCAACACTGCGTCGAAAGTTTTCAAACAAATCTCAACGCTTTAGTTGTGCGTTGTGCGTCGAAAGATACTATATCTCCTACCACTCCAATTGGAATGTCGGGAGATTTCGTCTTCTTCCTTTCCTCTCCATCGTATCTTAGTTCATCTTCTTCCTCTCCCCTCCTCCGTATCTCACCAGTCGTCTTCGTCTCTGACTTTGCTCATTCGCCTTCGCTTCTGACTTTGGCCATTCGTCTTCACCGTCAGCGTCCTCCCTCTCCTTGTCGTTTGTTTCCTCGTTGTCCGTCTCCTTAG

Coding sequence (CDS)

ATGCGTCAAGAGTTCCCCAAACAACTCCCGACGTCGCTCAATGTGTGTCGGGAGTTTCCAAATAATCATGACGTCGTTCAATATGCGTCGAGAGTTCCCAAACATCTCCTAACACTTACTAGTATTGTTGGGAATTGGCCTCCATGTCACAACGTCTCCCAACACTGCGTCGAAAGTTTTCAAACAAATCTCAACGCTTTAGTTGTGCGTTGTGCGTCGAAAGATACTATATCTCCTACCACTCCAATTGGAATGTCGGGAGATTTCGTCTTCTTCCTTTCCTCTCCATCGTATCTTAGTTCATCTTCTTCCTCTCCCCTCCTCCGTATCTCACCAGTCGTCTTCGTCTCTGACTTTGCTCATTCGCCTTCGCTTCTGACTTTGGCCATTCGTCTTCACCGTCAGCGTCCTCCCTCTCCTTGTCGTTTGTTTCCTCGTTGTCCGTCTCCTTAG

Protein sequence

MRQEFPKQLPTSLNVCREFPNNHDVVQYASRVPKHLLTLTSIVGNWPPCHNVSQHCVESFQTNLNALVVRCASKDTISPTTPIGMSGDFVFFLSSPSYLSSSSSSPLLRISPVVFVSDFAHSPSLLTLAIRLHRQRPPSPCRLFPRCPSP
Homology
[Close]
BLAST of CsaV3_3G018630 vs. NCBI nr
Match: KGN57542.1 (hypothetical protein Csa_3G207910 [Cucumis sativus])

HSP 1 Score: 310.5 bits (794), Expect = 3.2e-81
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0 

Query: 1   MRQEFPKQLPTSLNVCREFPNNHDVVQYASRVPKHLLTLTSIVGNWPPCHNVSQHCVESF 60
           MRQEFPKQLPTSLNVCREFPNNHDVVQYASRVPKHLLTLTSIVGNWPPCHNVSQHCVESF
Sbjct: 1   MRQEFPKQLPTSLNVCREFPNNHDVVQYASRVPKHLLTLTSIVGNWPPCHNVSQHCVESF 60

Query: 61  QTNLNALVVRCASKDTISPTTPIGMSGDFVFFLSSPSYLSSSSSSPLLRISPVVFVSDFA 120
           QTNLNALVVRCASKDTISPTTPIGMSGDFVFFLSSPSYLSSSSSSPLLRISPVVFVSDFA
Sbjct: 61  QTNLNALVVRCASKDTISPTTPIGMSGDFVFFLSSPSYLSSSSSSPLLRISPVVFVSDFA 120

Query: 121 HSPSLLTLAIRLHRQRPPSPCRLFPRCPSP 151
           HSPSLLTLAIRLHRQRPPSPCRLFPRCPSP
Sbjct: 121 HSPSLLTLAIRLHRQRPPSPCRLFPRCPSP 150

[Close]
BLAST of CsaV3_3G018630 vs. TrEMBL
Match: tr|A0A0A0LAA6|A0A0A0LAA6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G207910 PE=4 SV=1)

HSP 1 Score: 310.5 bits (794), Expect = 2.1e-81
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0 

Query: 1   MRQEFPKQLPTSLNVCREFPNNHDVVQYASRVPKHLLTLTSIVGNWPPCHNVSQHCVESF 60
           MRQEFPKQLPTSLNVCREFPNNHDVVQYASRVPKHLLTLTSIVGNWPPCHNVSQHCVESF
Sbjct: 1   MRQEFPKQLPTSLNVCREFPNNHDVVQYASRVPKHLLTLTSIVGNWPPCHNVSQHCVESF 60

Query: 61  QTNLNALVVRCASKDTISPTTPIGMSGDFVFFLSSPSYLSSSSSSPLLRISPVVFVSDFA 120
           QTNLNALVVRCASKDTISPTTPIGMSGDFVFFLSSPSYLSSSSSSPLLRISPVVFVSDFA
Sbjct: 61  QTNLNALVVRCASKDTISPTTPIGMSGDFVFFLSSPSYLSSSSSSPLLRISPVVFVSDFA 120

Query: 121 HSPSLLTLAIRLHRQRPPSPCRLFPRCPSP 151
           HSPSLLTLAIRLHRQRPPSPCRLFPRCPSP
Sbjct: 121 HSPSLLTLAIRLHRQRPPSPCRLFPRCPSP 150

The following BLAST results are available for this feature:
BLAST of CsaV3_3G018630 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN57542.13.2e-81100.00hypothetical protein Csa_3G207910 [Cucumis sativus][more]
BLAST of CsaV3_3G018630 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G018630 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G018630 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LAA6|A0A0A0LAA6_CUCSA2.1e-81100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G207910 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G018630.1CsaV3_3G018630.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_3G018630CSPI03G18580Wild cucumber (PI 183967)cpicucB144
CsaV3_3G018630CsGy3G018440Cucumber (Gy14) v2cgybcucB117
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_3G018630Cucumber (Chinese Long) v3cuccucB156
CsaV3_3G018630Silver-seed gourdcarcucB0236
CsaV3_3G018630Silver-seed gourdcarcucB0403
CsaV3_3G018630Silver-seed gourdcarcucB0687
CsaV3_3G018630Cucumber (Gy14) v2cgybcucB329
CsaV3_3G018630Cucumber (Gy14) v1cgycucB338
CsaV3_3G018630Cucumber (Gy14) v1cgycucB369
CsaV3_3G018630Cucurbita maxima (Rimu)cmacucB0145
CsaV3_3G018630Cucurbita maxima (Rimu)cmacucB0373
CsaV3_3G018630Cucurbita maxima (Rimu)cmacucB0618
CsaV3_3G018630Cucurbita maxima (Rimu)cmacucB0829
CsaV3_3G018630Cucurbita moschata (Rifu)cmocucB0133
CsaV3_3G018630Cucurbita moschata (Rifu)cmocucB0370
CsaV3_3G018630Cucurbita moschata (Rifu)cmocucB0602
CsaV3_3G018630Cucurbita moschata (Rifu)cmocucB0814
CsaV3_3G018630Cucurbita pepo (Zucchini)cpecucB0247
CsaV3_3G018630Cucurbita pepo (Zucchini)cpecucB0302
CsaV3_3G018630Cucurbita pepo (Zucchini)cpecucB0484
CsaV3_3G018630Wild cucumber (PI 183967)cpicucB396
CsaV3_3G018630Bottle gourd (USVL1VR-Ls)cuclsiB205
CsaV3_3G018630Bottle gourd (USVL1VR-Ls)cuclsiB230
CsaV3_3G018630Melon (DHL92) v3.5.1cucmeB189
CsaV3_3G018630Melon (DHL92) v3.5.1cucmeB247
CsaV3_3G018630Melon (DHL92) v3.6.1cucmedB181
CsaV3_3G018630Melon (DHL92) v3.6.1cucmedB246
CsaV3_3G018630Watermelon (Charleston Gray)cucwcgB218
CsaV3_3G018630Watermelon (Charleston Gray)cucwcgB238
CsaV3_3G018630Watermelon (97103) v1cucwmB252
CsaV3_3G018630Watermelon (97103) v1cucwmB279
CsaV3_3G018630Watermelon (97103) v2cucwmbB201
CsaV3_3G018630Watermelon (97103) v2cucwmbB217
CsaV3_3G018630Wax gourdcucwgoB287