CsaV3_3G018280 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G018280
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr3 : 14014884 .. 14015138 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGCCGGAAGTGGAAACAGTGGAAGAGGATTGAAAGAAGAGAAAGAGAAAAAGGGGGAAAAGAAAGAGAGAGGAGCGGTGAGTTGGTGGTAGAGATTGTGTTTTTATATGGAGCATTGGGGAATGGAAATGTTTGTGCTTTCGGTGTGTCCCGTTGGCGGGCAGAAATGCAACGGCACACACACCAAGCCGGACCCCCATGAAAGCAACCTCATAAGAAACCTAAATAAATGGCAATGCCATTTGATTTGA

mRNA sequence

ATGGCCGCCGGAAGTGGAAACAGTGGAAGAGGATTGAAAGAAGAGAAAGAGAAAAAGGGGGAAAAGAAAGAGAGAGGAGCGAAATGCAACGGCACACACACCAAGCCGGACCCCCATGAAAGCAACCTCATAAGAAACCTAAATAAATGGCAATGCCATTTGATTTGA

Coding sequence (CDS)

ATGGCCGCCGGAAGTGGAAACAGTGGAAGAGGATTGAAAGAAGAGAAAGAGAAAAAGGGGGAAAAGAAAGAGAGAGGAGCGAAATGCAACGGCACACACACCAAGCCGGACCCCCATGAAAGCAACCTCATAAGAAACCTAAATAAATGGCAATGCCATTTGATTTGA

Protein sequence

MAAGSGNSGRGLKEEKEKKGEKKERGAKCNGTHTKPDPHESNLIRNLNKWQCHLI
Homology
[Close]
BLAST of CsaV3_3G018280 vs. NCBI nr
Match: KGN57505.1 (hypothetical protein Csa_3G199670 [Cucumis sativus])

HSP 1 Score: 115.5 bits (288), Expect = 5.7e-23
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0 

Query: 1  MAAGSGNSGRGLKEEKEKKGEKKERGAKCNGTHTKPDPHESNLIRNLNKWQCHLI 56
          MAAGSGNSGRGLKEEKEKKGEKKERGAKCNGTHTKPDPHESNLIRNLNKWQCHLI
Sbjct: 1  MAAGSGNSGRGLKEEKEKKGEKKERGAKCNGTHTKPDPHESNLIRNLNKWQCHLI 55

[Close]
BLAST of CsaV3_3G018280 vs. TrEMBL
Match: tr|A0A0A0L6E9|A0A0A0L6E9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G199670 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 3.7e-23
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0 

Query: 1  MAAGSGNSGRGLKEEKEKKGEKKERGAKCNGTHTKPDPHESNLIRNLNKWQCHLI 56
          MAAGSGNSGRGLKEEKEKKGEKKERGAKCNGTHTKPDPHESNLIRNLNKWQCHLI
Sbjct: 1  MAAGSGNSGRGLKEEKEKKGEKKERGAKCNGTHTKPDPHESNLIRNLNKWQCHLI 55

The following BLAST results are available for this feature:
BLAST of CsaV3_3G018280 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN57505.15.7e-23100.00hypothetical protein Csa_3G199670 [Cucumis sativus][more]
BLAST of CsaV3_3G018280 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G018280 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G018280 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L6E9|A0A0A0L6E9_CUCSA3.7e-23100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G199670 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G018280.1CsaV3_3G018280.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..43
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 10..42

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_3G018280CSPI03G18220Wild cucumber (PI 183967)cpicucB144
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_3G018280Cucumber (Chinese Long) v3cuccucB153
CsaV3_3G018280Cucumber (Chinese Long) v3cuccucB156
CsaV3_3G018280Silver-seed gourdcarcucB0326
CsaV3_3G018280Silver-seed gourdcarcucB0403
CsaV3_3G018280Cucumber (Gy14) v2cgybcucB117
CsaV3_3G018280Cucumber (Gy14) v2cgybcucB282
CsaV3_3G018280Cucumber (Gy14) v2cgybcucB329
CsaV3_3G018280Cucumber (Gy14) v1cgycucB123
CsaV3_3G018280Cucumber (Gy14) v1cgycucB338
CsaV3_3G018280Cucumber (Gy14) v1cgycucB369
CsaV3_3G018280Cucurbita maxima (Rimu)cmacucB0145
CsaV3_3G018280Cucurbita maxima (Rimu)cmacucB0373
CsaV3_3G018280Cucurbita maxima (Rimu)cmacucB0618
CsaV3_3G018280Cucurbita maxima (Rimu)cmacucB0829
CsaV3_3G018280Cucurbita moschata (Rifu)cmocucB0133
CsaV3_3G018280Cucurbita moschata (Rifu)cmocucB0370
CsaV3_3G018280Cucurbita moschata (Rifu)cmocucB0602
CsaV3_3G018280Cucurbita moschata (Rifu)cmocucB0814
CsaV3_3G018280Cucurbita pepo (Zucchini)cpecucB0247
CsaV3_3G018280Cucurbita pepo (Zucchini)cpecucB0302
CsaV3_3G018280Cucurbita pepo (Zucchini)cpecucB0484
CsaV3_3G018280Cucurbita pepo (Zucchini)cpecucB0846
CsaV3_3G018280Wild cucumber (PI 183967)cpicucB347
CsaV3_3G018280Wild cucumber (PI 183967)cpicucB396
CsaV3_3G018280Bottle gourd (USVL1VR-Ls)cuclsiB184
CsaV3_3G018280Bottle gourd (USVL1VR-Ls)cuclsiB205
CsaV3_3G018280Bottle gourd (USVL1VR-Ls)cuclsiB230
CsaV3_3G018280Melon (DHL92) v3.5.1cucmeB189
CsaV3_3G018280Melon (DHL92) v3.5.1cucmeB247
CsaV3_3G018280Melon (DHL92) v3.5.1cucmeB265
CsaV3_3G018280Melon (DHL92) v3.6.1cucmedB181
CsaV3_3G018280Melon (DHL92) v3.6.1cucmedB246
CsaV3_3G018280Melon (DHL92) v3.6.1cucmedB260
CsaV3_3G018280Watermelon (Charleston Gray)cucwcgB214
CsaV3_3G018280Watermelon (Charleston Gray)cucwcgB218
CsaV3_3G018280Watermelon (Charleston Gray)cucwcgB238
CsaV3_3G018280Watermelon (97103) v1cucwmB252
CsaV3_3G018280Watermelon (97103) v1cucwmB279
CsaV3_3G018280Watermelon (97103) v2cucwmbB201
CsaV3_3G018280Watermelon (97103) v2cucwmbB217
CsaV3_3G018280Wax gourdcucwgoB313
CsaV3_3G018280Wax gourdcucwgoB287