CsaV3_3G016400 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G016400
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
Descriptionpentatricopeptide repeat-containing protein At5g12100, mitochondrial
Locationchr3 : 12263186 .. 12269086 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAAAGTAACCTAGGGGGACTGACGCTTTGTTAATTCGTTCATTCTTCACTCTTTTTCTAATATCCTCTATTTGGTTATCTCCCATCTTTGTAGCGGGGGGCTCACAGCTACACATCGCTACCCAACCACCCACAATGTAACTCTTTTTCTTCCCTTCTTCTTTTGTGCAGATATGTAAGTATGCTTTCATTTGCAAACTGGGCATTATCGCATTTACAAAATCTTTAAAGCTGAAAATGGGAAGCCATGGATATTACTTACCTAGAATTCCTATCACTAGACGATTCAGAACACACCCTTTTGTTTTTATTCCCAGCTCGCTACCATTTTGCTCTGATTCTACTTCTACTTCTACTTCTACCCAGAACCAGAACAATTTTAATCAATTTGAACACGTTTCTAGTCTTCAGGAAGTAACATTGAGCACCACCAGCAGCCAACATTCTAACCCTTTAGAACCTTTGTGCCTTGAGTTAGTTCAAAAGCTTCGGATTTTACTTCAACAGGGGCGTACGGGTGCTGCCGAGAGCCTCATTAAGTCGGTAATTCTCTCCAAATCTCCTTTCTCATCACCTTCTGATCTCATTCCGCTTTTTTCTGTCCATGCTCCATCCTTGAATCATGTTTTTTCAAAGACGTTGTTTATGGTGTTTTTGGATCTCAAAATGACTGATGATGCTATAAGATTATGCACCTCAATGAAGAAAAATGGTGTTGTTCCTGCCGTGGTGGATACCCTTAATGTTTTATTTAAACTTTTAATGTCTTCAAAAGAGTTTAAGAAAACGCTTGACTTCTTTTCTGAACTTGTTGAATCTGGTATTCTACCAGATAAATTCATGTATGGTAAGGCAGTTGAGGCCGCGATGAAACTAGGGAACATGAATAAGGCATGTGATCTGGTGTGTTGCATGAAGAAGATAGGGATTGATCCTACTTTCTTTGTTTATAATGTGTTAATCTCTGGCTTTTGCAAAGAAAAGAAAATGGTTGATGCACAAAAGATATTTGATGAAATGATCACCAAAAACATGTCCCCGAATTTGGTTACTTATAATACAATTATCAATGGATATTGTAAGGCGGGAAAACTGGATAAAGCTTTTAGTTTGAAGGAGAGGATGAAGCTTGAAAATTTGGGACCTAATCTTGTAACATACAACTCTTTGCTAAGTGGGCTCTGTAAGGCAAGGCAGATGGAAGAAGCCAAAAAGTTATTGGTTGAGATGGAAACTCATGGGTTTGCACCAGATGGATTTACCTATAGCATACTTTTTGATGGGTATCTGAGGTCTGGCGACGGTGAAGCCTCAGTGGTTCTGTTTGAAGAAGCAGTTAAAAAAGGGGTGAGAATAAATGAATACACTTGTTGTATTTTGTTGAATGGGTTATGTAAAGATGGTAAGGCAGAAAAAGCTGAGGAATTTCTGACGAAGTTAATGATGAATGGATTGGTTCCGAATGAAATAATTTTTAATGTACTAGTGGATGGGTATTGCCGAAAAGGAAATATTGATGGTGCTATATCAACCATCCAAAGGATGGAAAATCAAGGCTTAACACCCAATTGCATCACTTTTAATTCGTTGATCCATAAATTTTGTGAAATAAAAGAGATGGACAAGGCAGAGGAGTGGTTGAGAAAGATGATGGAGAGGGAAGTTTGCCCTAGTATTGAAACCTATAACACCCTTCTTGATGGTTATGGACGGATGCGTCTTTTTGATAGATGTTTCCAAGTTCTCGAAGAAATGGAAAGTAAAGGGATAAAGCCAAATGTTGTAAGCTATGGAGCTCTCATTAACTGTCTGTGCAAAGTTGGTAGATTTGTTGAAGCTGAAGCAGTTTTTGCTGATATGGATGGAAAAGGAGTATTTCCAAATGCTCAAATTTATAATATGCTGATTGATTGTAATTGCACATCAGGGAAGATGCAAGATGCTTTCAAGACTTTTGATGAAATGATTGATAGGGACATCACCCCAACCCTTGCAACATACAATTCACTCATCAATGGATTGTGCAAGAAAGGGAGGGTGATTGAAGCAGAAGAGTTAGCCAACCAAATTACAAAGAGTGGTCTTACACCTGATGTGATCACATACAACTCCCTTATCTCTGGTTATTGTAGTTCTGGGAACTCTAAAAAAGGCCTTGAGTTATATGAAACTATGAAAAAGCAAGGCATCAATCCTACATTAATAACCTATCATCTTTTAATATCCGGACGTAGCAAGGTTGGTCTAGATACTATGGAGGAACTGTTCAATGAAGTGTTACACAGGGATCTTGCTCTAGATAAAGTTGTATATAATGGACTGATTTTTTGCTATGTAGAAAACGGAGATGTTCAGAAGGCATTTGTTTTGTACAATAAGATGATAGTTGAAGGAGTCCAACTAGACAAGATAACTTACAACAGCTTGATTTTAGGATGCTCCAGAGGTGGTAAGGTTACAGAAGTAAGGAAACTTGTCGAGGATATGAAGGCTAGAGGGTTGACTCCTAAGGCTGACACTTACAATATCTTAGTTAAGGGACTTTGTGAATTTGGTGATTATAGTGAGGCACATACATGGTATAAAGAGATGTTTGAAAACAACTTATTGTTAAATTCCCCTGTTCGCAATCAACTCATTGATGGTCTCAAGAGAGAGGGGAGGTTTCAGGAAGCGCGACTTATTTTGTCTGAGACGTATGTCTGAATTTTGAGTAATGAGCCTTCTGCATCTATGACTATGACTATGACTGTGTGTAACAACTCTCAACTGAGAGTTCGCACTTAGATTACTTAGGAAAAATACAGTGGGCTCCTTTCAAGAGGGAGTTCCTCTCCAAGTGCAGTACCAAAATATCACAGACCAAAAAACATAAGTCCCACTACAACACAAAAGTAATATATATAACAGTACACGTCACCCAACCCTACTTAACACTGGTTCGGTCTACCCCTTCTCACATATGTGTGTATGATGGGTGGTCAAAGACTATGTAGTTTAAACATTTGCTTTAAAGAACCTGTGAACACATATGGCTATCACTGTTGAAAAGTGTTTCTACAGGTGGATTATGTTGCTATGGTTCATGGCAACATAATCCAACGTCTTATATCTGATGACACAGCTGCCGAGTGACTTGGTAAGCAGGGTCCCTCTTCTTAGCTTTGATTTTGTACTGACTCATCAACCTTATCATATATTTTCTCTGTGATTCAGACAAATGAGCTGTATAGACTTCCTGCTGTGACATATTACTTGATGTATGCTTGGATAAGCCCATATGTCAAATTTTACATGCCTTGGTTACTGATTGATTCATAAGGATGTTCCGTGCTGCATTGAGTCATTTATCAAATTCATTTACCTTAATCTTTAAAACCGGTTCTTAGATTGATTAGTGATACCTTTAGCCCAACATGCATCAATCTTAAAACACTGGTTATTTCTCAAATCCTTTTTATCTCAAATTGGATATCTTTGATGTAATCCCCTAGCGTAATGACATTTTCCCCCTTATTTCATTTATCAATGAAATGTTTTCCAATAAAAAAAATGTTGTGGCTGCAACAGAGTACAATAACATTTACTCGAGGAGCATCTTTCAAGCATTTAGTAAAATTTGATTTGCTGTAGTGTTTGATCTTAAAAGGAGTACAGTGATTTCTTGACTGTAAATATCGTAGTCTTGAAGTTAAGTTGATTACTTATTAGCATGGTGAGAAACTTGGATTTAGATAATGGATAAAGGTTGGGGTATACATGGTTGGGTGGACTTGGGTTGAGAGTGTTTTCTTGACCAACCCAAAATTTGAGATGGCTGGGTTGACAACCCTAAATACCCAAAAAAAAGTTTCCAACCCAATTCAATCGAAAAAATTTGGGTTGGGTTGGTGGGTTATAGTTTTTTTTTTTTCTTTTTAACTTTTAGTTTTAAGTGGGTAAATTTATTGATAACATGTGATTAACAACAAAAATCTCATTAAATTCAAATATAAAATACTGGGTATATATATATATATATATATATGATATTTAATACAAATTAATCTTTAAACAAAGACAAATATTATAACAATTCTAAAAAAATATATTAAAATTCACTAATTAATCAATCAAAGTTAGTCAAAATTTGAACAAAGAAAAATAGATATATATTTTTTTATTTATATATAATTCTGGTTGGATTGAGTGAAATCAAATTTCTTTTTAGCTAACTTGTCACCTATTCCAACCCAACAAGGTAGAAAATGTTTAACCCATCCCAACCCTTACATTTGGGTTAGATAGTTTGGGTTGTTTGTGTTGAGTTATTTGAACACTCTAGATAAAGTAATTACAATTTGTGTGATTGACAATAATGGATTGAGAGGCCTAAGATTTAGATAAAGTAATGACAATTTGTGTGATTGACAATATTGGATTGAGAGGCCTAAGATTTAGAATATGAAGTTGAATCTAAAGAGATATGAGCTTGGGAAGTGTCATGAAATGAAATTGACTGAAGGCTGTTTTGCTTTGAATTATTGGACCTGCTTCTGCCAGTTTTCAATTGCTAGTAAATTACTTATAGTTTGTTTGGATTGAATTTGTATGTACTTAGAAAAAAATAAAAATGTTTCTACATGCAATAAAGTGAATTTATGAACTTAAAAACTCAATATCCAAACATGCCCTTAATCATTTTACACGAGTCATATTCCCTCTTATTTAGGCTTCTAAATGTGGATAAGCTTTATCAAGTTTGGTTTTTCAGGAGGAACAACTAGTTTACAACTTCCCTCTTATTTAGGCTTCTAAATGTGGATAAGCTTTATCAAGTTTGGTTTTTCAGGAGGAACAACTAGTTTACAACTTGTATATTAATGTTCATTTGTGTTTCTTTTTTTTGTGTGTGGAGCTACAGATGTTTTGATAGCATCTATCATGGTGGTTGTGGCTGTGTTTGTGAAGAGACCAGTTGCCAACATTGTATCACATGCATTTAAACATAGTAAGGGGACTTATTTTCTGCTAAGCTTATACCTAGTGATTTTCTTGAAAATTTTAGTTTCATATTCTTTTGATCTGATTATTTTACTCAACTATTAGGTTGCGGTGGTGTTTGCTTGAATTGGAGAATTGAATTTGTTCTTTGCCGTGCTCTCCGAATCTTCATCTCATAGGAAAAGAAAGACGATAGGTTTTTACGTAGCACATATTTGGTTCTCTTGGTGTGAAATCACAAGCAGTAAATATTGTGATCGAAAGTTGTTGAGGCTTTCAATGAAACCGAATAATTTTTCCGTTCTCACACCAATTTTGTAGTATTAGCTTAGTAACAGGTCGATCTGAGATAACCAACCGCTTTTTCTTTAAGACGAACCACACAAATTATGAGTGAATCAAAGAAAAAAAGGACAAAGAACACAAATCTAAAGATGATGGTTGAAAGTTATCAACGAAATAAAACACAACGGTGTTGTGGCACCCTAGGGCAGTGTTGCGGGACCAAGCCGCGCGCGAATAGTTCCATTAAACTTCAGAGAGTCATGGTGCCCAAGTGCACTGTTGCGACGTTGTGTGTCACAGTCATGCTTGTTCAAGGCATGTTGCATGTGGTCCTATGATCACTCTGACTCCTCGCATTGTCTTTTTTTATTTTTCAAATACTTTTATTAAGTATGTCATCTCACACATTAATGTACGCGAGCCTTCCCGTTCCCTTTTTGTTCAGAATATGCTATATGGGGATAAGATTTATCATTGTACTTTTATACCCATGAGTTAAAAGATATAAAGTTTTTGTCCCTTATTGCTTATAGCCTTATAATGTCGTCTCTTTTCTTAAACATGCTTTCAAATATTTGTGAAAACCTTTTCCTCTAGACTCGTTTTCTTAAACATTTTCTCAAGAATAGGGG

mRNA sequence

ATGGGAAGCCATGGATATTACTTACCTAGAATTCCTATCACTAGACGATTCAGAACACACCCTTTTGTTTTTATTCCCAGCTCGCTACCATTTTGCTCTGATTCTACTTCTACTTCTACTTCTACCCAGAACCAGAACAATTTTAATCAATTTGAACACGTTTCTAGTCTTCAGGAAGTAACATTGAGCACCACCAGCAGCCAACATTCTAACCCTTTAGAACCTTTGTGCCTTGAGTTAGTTCAAAAGCTTCGGATTTTACTTCAACAGGGGCGTACGGGTGCTGCCGAGAGCCTCATTAAGTCGGTAATTCTCTCCAAATCTCCTTTCTCATCACCTTCTGATCTCATTCCGCTTTTTTCTGTCCATGCTCCATCCTTGAATCATGTTTTTTCAAAGACGTTGTTTATGGTGTTTTTGGATCTCAAAATGACTGATGATGCTATAAGATTATGCACCTCAATGAAGAAAAATGGTGTTGTTCCTGCCGTGGTGGATACCCTTAATGTTTTATTTAAACTTTTAATGTCTTCAAAAGAGTTTAAGAAAACGCTTGACTTCTTTTCTGAACTTGTTGAATCTGGTATTCTACCAGATAAATTCATGTATGGTAAGGCAGTTGAGGCCGCGATGAAACTAGGGAACATGAATAAGGCATGTGATCTGGTGTGTTGCATGAAGAAGATAGGGATTGATCCTACTTTCTTTGTTTATAATGTGTTAATCTCTGGCTTTTGCAAAGAAAAGAAAATGGTTGATGCACAAAAGATATTTGATGAAATGATCACCAAAAACATGTCCCCGAATTTGGTTACTTATAATACAATTATCAATGGATATTGTAAGGCGGGAAAACTGGATAAAGCTTTTAGTTTGAAGGAGAGGATGAAGCTTGAAAATTTGGGACCTAATCTTGTAACATACAACTCTTTGCTAAGTGGGCTCTGTAAGGCAAGGCAGATGGAAGAAGCCAAAAAGTTATTGGTTGAGATGGAAACTCATGGGTTTGCACCAGATGGATTTACCTATAGCATACTTTTTGATGGGTATCTGAGGTCTGGCGACGGTGAAGCCTCAGTGGTTCTGTTTGAAGAAGCAGTTAAAAAAGGGGTGAGAATAAATGAATACACTTGTTGTATTTTGTTGAATGGGTTATGTAAAGATGGTAAGGCAGAAAAAGCTGAGGAATTTCTGACGAAGTTAATGATGAATGGATTGGTTCCGAATGAAATAATTTTTAATGTACTAGTGGATGGGTATTGCCGAAAAGGAAATATTGATGGTGCTATATCAACCATCCAAAGGATGGAAAATCAAGGCTTAACACCCAATTGCATCACTTTTAATTCGTTGATCCATAAATTTTGTGAAATAAAAGAGATGGACAAGGCAGAGGAGTGGTTGAGAAAGATGATGGAGAGGGAAGTTTGCCCTAGTATTGAAACCTATAACACCCTTCTTGATGGTTATGGACGGATGCGTCTTTTTGATAGATGTTTCCAAGTTCTCGAAGAAATGGAAAGTAAAGGGATAAAGCCAAATGTTGTAAGCTATGGAGCTCTCATTAACTGTCTGTGCAAAGTTGGTAGATTTGTTGAAGCTGAAGCAGTTTTTGCTGATATGGATGGAAAAGGAGTATTTCCAAATGCTCAAATTTATAATATGCTGATTGATTGTAATTGCACATCAGGGAAGATGCAAGATGCTTTCAAGACTTTTGATGAAATGATTGATAGGGACATCACCCCAACCCTTGCAACATACAATTCACTCATCAATGGATTGTGCAAGAAAGGGAGGGTGATTGAAGCAGAAGAGTTAGCCAACCAAATTACAAAGAGTGGTCTTACACCTGATGTGATCACATACAACTCCCTTATCTCTGGTTATTGTAGTTCTGGGAACTCTAAAAAAGGCCTTGAGTTATATGAAACTATGAAAAAGCAAGGCATCAATCCTACATTAATAACCTATCATCTTTTAATATCCGGACGTAGCAAGGTTGGTCTAGATACTATGGAGGAACTGTTCAATGAAGTGTTACACAGGGATCTTGCTCTAGATAAAGTTGTATATAATGGACTGATTTTTTGCTATGTAGAAAACGGAGATGTTCAGAAGGCATTTGTTTTGTACAATAAGATGATAGTTGAAGGAGTCCAACTAGACAAGATAACTTACAACAGCTTGATTTTAGGATGCTCCAGAGGTGGTAAGGTTACAGAAGTAAGGAAACTTGTCGAGGATATGAAGGCTAGAGGGTTGACTCCTAAGGCTGACACTTACAATATCTTAGTTAAGGGACTTTGTGAATTTGGTGATTATAGTGAGGCACATACATGGTATAAAGAGATGTTTGAAAACAACTTATTGTTAAATTCCCCTGTTCGCAATCAACTCATTGATGGTCTCAAGAGAGAGGGGAGGTTTCAGGAAGCGCGACTTATTTTGTCTGAGACGTATGTCTGA

Coding sequence (CDS)

ATGGGAAGCCATGGATATTACTTACCTAGAATTCCTATCACTAGACGATTCAGAACACACCCTTTTGTTTTTATTCCCAGCTCGCTACCATTTTGCTCTGATTCTACTTCTACTTCTACTTCTACCCAGAACCAGAACAATTTTAATCAATTTGAACACGTTTCTAGTCTTCAGGAAGTAACATTGAGCACCACCAGCAGCCAACATTCTAACCCTTTAGAACCTTTGTGCCTTGAGTTAGTTCAAAAGCTTCGGATTTTACTTCAACAGGGGCGTACGGGTGCTGCCGAGAGCCTCATTAAGTCGGTAATTCTCTCCAAATCTCCTTTCTCATCACCTTCTGATCTCATTCCGCTTTTTTCTGTCCATGCTCCATCCTTGAATCATGTTTTTTCAAAGACGTTGTTTATGGTGTTTTTGGATCTCAAAATGACTGATGATGCTATAAGATTATGCACCTCAATGAAGAAAAATGGTGTTGTTCCTGCCGTGGTGGATACCCTTAATGTTTTATTTAAACTTTTAATGTCTTCAAAAGAGTTTAAGAAAACGCTTGACTTCTTTTCTGAACTTGTTGAATCTGGTATTCTACCAGATAAATTCATGTATGGTAAGGCAGTTGAGGCCGCGATGAAACTAGGGAACATGAATAAGGCATGTGATCTGGTGTGTTGCATGAAGAAGATAGGGATTGATCCTACTTTCTTTGTTTATAATGTGTTAATCTCTGGCTTTTGCAAAGAAAAGAAAATGGTTGATGCACAAAAGATATTTGATGAAATGATCACCAAAAACATGTCCCCGAATTTGGTTACTTATAATACAATTATCAATGGATATTGTAAGGCGGGAAAACTGGATAAAGCTTTTAGTTTGAAGGAGAGGATGAAGCTTGAAAATTTGGGACCTAATCTTGTAACATACAACTCTTTGCTAAGTGGGCTCTGTAAGGCAAGGCAGATGGAAGAAGCCAAAAAGTTATTGGTTGAGATGGAAACTCATGGGTTTGCACCAGATGGATTTACCTATAGCATACTTTTTGATGGGTATCTGAGGTCTGGCGACGGTGAAGCCTCAGTGGTTCTGTTTGAAGAAGCAGTTAAAAAAGGGGTGAGAATAAATGAATACACTTGTTGTATTTTGTTGAATGGGTTATGTAAAGATGGTAAGGCAGAAAAAGCTGAGGAATTTCTGACGAAGTTAATGATGAATGGATTGGTTCCGAATGAAATAATTTTTAATGTACTAGTGGATGGGTATTGCCGAAAAGGAAATATTGATGGTGCTATATCAACCATCCAAAGGATGGAAAATCAAGGCTTAACACCCAATTGCATCACTTTTAATTCGTTGATCCATAAATTTTGTGAAATAAAAGAGATGGACAAGGCAGAGGAGTGGTTGAGAAAGATGATGGAGAGGGAAGTTTGCCCTAGTATTGAAACCTATAACACCCTTCTTGATGGTTATGGACGGATGCGTCTTTTTGATAGATGTTTCCAAGTTCTCGAAGAAATGGAAAGTAAAGGGATAAAGCCAAATGTTGTAAGCTATGGAGCTCTCATTAACTGTCTGTGCAAAGTTGGTAGATTTGTTGAAGCTGAAGCAGTTTTTGCTGATATGGATGGAAAAGGAGTATTTCCAAATGCTCAAATTTATAATATGCTGATTGATTGTAATTGCACATCAGGGAAGATGCAAGATGCTTTCAAGACTTTTGATGAAATGATTGATAGGGACATCACCCCAACCCTTGCAACATACAATTCACTCATCAATGGATTGTGCAAGAAAGGGAGGGTGATTGAAGCAGAAGAGTTAGCCAACCAAATTACAAAGAGTGGTCTTACACCTGATGTGATCACATACAACTCCCTTATCTCTGGTTATTGTAGTTCTGGGAACTCTAAAAAAGGCCTTGAGTTATATGAAACTATGAAAAAGCAAGGCATCAATCCTACATTAATAACCTATCATCTTTTAATATCCGGACGTAGCAAGGTTGGTCTAGATACTATGGAGGAACTGTTCAATGAAGTGTTACACAGGGATCTTGCTCTAGATAAAGTTGTATATAATGGACTGATTTTTTGCTATGTAGAAAACGGAGATGTTCAGAAGGCATTTGTTTTGTACAATAAGATGATAGTTGAAGGAGTCCAACTAGACAAGATAACTTACAACAGCTTGATTTTAGGATGCTCCAGAGGTGGTAAGGTTACAGAAGTAAGGAAACTTGTCGAGGATATGAAGGCTAGAGGGTTGACTCCTAAGGCTGACACTTACAATATCTTAGTTAAGGGACTTTGTGAATTTGGTGATTATAGTGAGGCACATACATGGTATAAAGAGATGTTTGAAAACAACTTATTGTTAAATTCCCCTGTTCGCAATCAACTCATTGATGGTCTCAAGAGAGAGGGGAGGTTTCAGGAAGCGCGACTTATTTTGTCTGAGACGTATGTCTGA

Protein sequence

MGSHGYYLPRIPITRRFRTHPFVFIPSSLPFCSDSTSTSTSTQNQNNFNQFEHVSSLQEVTLSTTSSQHSNPLEPLCLELVQKLRILLQQGRTGAAESLIKSVILSKSPFSSPSDLIPLFSVHAPSLNHVFSKTLFMVFLDLKMTDDAIRLCTSMKKNGVVPAVVDTLNVLFKLLMSSKEFKKTLDFFSELVESGILPDKFMYGKAVEAAMKLGNMNKACDLVCCMKKIGIDPTFFVYNVLISGFCKEKKMVDAQKIFDEMITKNMSPNLVTYNTIINGYCKAGKLDKAFSLKERMKLENLGPNLVTYNSLLSGLCKARQMEEAKKLLVEMETHGFAPDGFTYSILFDGYLRSGDGEASVVLFEEAVKKGVRINEYTCCILLNGLCKDGKAEKAEEFLTKLMMNGLVPNEIIFNVLVDGYCRKGNIDGAISTIQRMENQGLTPNCITFNSLIHKFCEIKEMDKAEEWLRKMMEREVCPSIETYNTLLDGYGRMRLFDRCFQVLEEMESKGIKPNVVSYGALINCLCKVGRFVEAEAVFADMDGKGVFPNAQIYNMLIDCNCTSGKMQDAFKTFDEMIDRDITPTLATYNSLINGLCKKGRVIEAEELANQITKSGLTPDVITYNSLISGYCSSGNSKKGLELYETMKKQGINPTLITYHLLISGRSKVGLDTMEELFNEVLHRDLALDKVVYNGLIFCYVENGDVQKAFVLYNKMIVEGVQLDKITYNSLILGCSRGGKVTEVRKLVEDMKARGLTPKADTYNILVKGLCEFGDYSEAHTWYKEMFENNLLLNSPVRNQLIDGLKREGRFQEARLILSETYV
Homology
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BLAST of CsaV3_3G016400 vs. NCBI nr
Match: KGN57298.1 (hypothetical protein Csa_3G177910 [Cucumis sativus])

HSP 1 Score: 387.1 bits (993), Expect = 1.5e-103
Identity = 216/216 (100.00%), Postives = 216/216 (100.00%), Query Frame = 0 

Query: 1   MGSHGYYLPRIPITRRFRTHPFVFIPSSLPFCSDXXXXXXXXXXXXXXXQFEHVSSLQEV 60
           MGSHGYYLPRIPITRRFRTHPFVFIPSSLPFCSDXXXXXXXXXXXXXXXQFEHVSSLQEV
Sbjct: 1   MGSHGYYLPRIPITRRFRTHPFVFIPSSLPFCSDXXXXXXXXXXXXXXXQFEHVSSLQEV 60

Query: 61  TLSTTSSQHSNPLEPLCLELVQKLRILLQQGRTGAAESLIKSVILSKSPFSSPSDLIPLF 120
           TLSTTSSQHSNPLEPLCLELVQKLRILLQQGRTGAAESLIKSVILSKSPFSSPSDLIPLF
Sbjct: 61  TLSTTSSQHSNPLEPLCLELVQKLRILLQQGRTGAAESLIKSVILSKSPFSSPSDLIPLF 120

Query: 121 SVHAPSLNHVFSKTLFMVFLDLKMTDDAIRLCTSMKKNGVVPAVVDTLNVLFKLLMSSKE 180
           SVHAPSLNHVFSKTLFMVFLDLKMTDDAIRLCTSMKKNGVVPAVVDTLNVLFKLLMSSKE
Sbjct: 121 SVHAPSLNHVFSKTLFMVFLDLKMTDDAIRLCTSMKKNGVVPAVVDTLNVLFKLLMSSKE 180

Query: 181 FKKTLDFFSELVESGILPDKFMYGKAVEAAMKLGNM 217
           FKKTLDFFSELVESGILPDKFMYGKAVEAAMKLGNM
Sbjct: 181 FKKTLDFFSELVESGILPDKFMYGKAVEAAMKLGNM 216

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BLAST of CsaV3_3G016400 vs. NCBI nr
Match: XP_008439118.1 (PREDICTED: pentatricopeptide repeat-containing protein At5g12100, mitochondrial [Cucumis melo])

HSP 1 Score: 338.2 bits (866), Expect = 7.9e-89
Identity = 181/216 (83.80%), Postives = 188/216 (87.04%), Query Frame = 0 

Query: 1   MGSHGYYLPRIPITRRFRTHPFVFIPSSLPFCSDXXXXXXXXXXXXXXXQFEHVSSLQEV 60
           MGSHGYYLPRI ITRRF THPF+FIPSS PF SD               Q E VSSLQEV
Sbjct: 1   MGSHGYYLPRITITRRFGTHPFIFIPSSQPFSSD----STSTPNQNNPNQVEQVSSLQEV 60

Query: 61  TLSTTSSQHSNPLEPLCLELVQKLRILLQQGRTGAAESLIKSVILSKSPFSSPSDLIPLF 120
           TLSTT++QHSNPLEPLCLELVQKLR+LLQQGRT AAESLIKSVILSKSPFSSPSDLIPLF
Sbjct: 61  TLSTTNNQHSNPLEPLCLELVQKLRVLLQQGRTCAAESLIKSVILSKSPFSSPSDLIPLF 120

Query: 121 SVHAPSLNHVFSKTLFMVFLDLKMTDDAIRLCTSMKKNGVVPAVVDTLNVLFKLLMSSKE 180
           SVH+PSLNHVFSKTLFM FLDLKMTDDAIRLCTSMKKNGVVPA V TLN LFKLLMSSKE
Sbjct: 121 SVHSPSLNHVFSKTLFMAFLDLKMTDDAIRLCTSMKKNGVVPA-VGTLNFLFKLLMSSKE 180

Query: 181 FKKTLDFFSELVESGILPDKFMYGKAVEAAMKLGNM 217
           FKKTLDFFSELVESGI PD+FMYGKAVEAA+KLG M
Sbjct: 181 FKKTLDFFSELVESGIQPDRFMYGKAVEAAIKLGKM 211

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BLAST of CsaV3_3G016400 vs. NCBI nr
Match: XP_022984191.1 (pentatricopeptide repeat-containing protein At5g12100, mitochondrial [Cucurbita maxima] >XP_022984192.1 pentatricopeptide repeat-containing protein At5g12100, mitochondrial [Cucurbita maxima] >XP_022984193.1 pentatricopeptide repeat-containing protein At5g12100, mitochondrial [Cucurbita maxima])

HSP 1 Score: 281.2 bits (718), Expect = 1.1e-71
Identity = 154/212 (72.64%), Postives = 166/212 (78.30%), Query Frame = 0 

Query: 1   MGSHGYYLPRIPITRRFRTHPFVFIPSSLPFCSDXXXXXXXXXXXXXXXQFEHVSSLQEV 60
           MG HGYYL RIP+ RRFRT    FIPSS PFCSD               Q E V+S QEV
Sbjct: 18  MGRHGYYLSRIPVIRRFRTQYLAFIPSSNPFCSD--------STQNNPNQIEQVTSHQEV 77

Query: 61  TLSTTSSQHSNPLEPLCLELVQKLRILLQQGRTGAAESLIKSVILSKSPFSSPSDLIPLF 120
           T STT +QH N  EPLC ELVQKLRILLQQ RTGAA+ LIKS+ILSKSPFSSP DLI LF
Sbjct: 78  TSSTTRNQHPNHPEPLCHELVQKLRILLQQERTGAAKRLIKSIILSKSPFSSPCDLIALF 137

Query: 121 SVHAPSLNHVFSKTLFMVFLDLKMTDDAIRLCTSMKKNGVVPAVVDTLNVLFKLLMSSKE 180
           SVH+P+L HVFS  L M FLDLKM DDAIRLCTSMK+NGVVPAV  TL+VLFKLLMSSKE
Sbjct: 138 SVHSPNLKHVFSNMLLMAFLDLKMLDDAIRLCTSMKENGVVPAVA-TLSVLFKLLMSSKE 197

Query: 181 FKKTLDFFSELVESGILPDKFMYGKAVEAAMK 213
           F+KTLDFFSELVESGI PD FMYGKAVEA++K
Sbjct: 198 FRKTLDFFSELVESGIRPDSFMYGKAVEASIK 220

[Close]
BLAST of CsaV3_3G016400 vs. NCBI nr
Match: XP_023552569.1 (pentatricopeptide repeat-containing protein At5g12100, mitochondrial [Cucurbita pepo subsp. pepo] >XP_023552570.1 pentatricopeptide repeat-containing protein At5g12100, mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 276.2 bits (705), Expect = 3.7e-70
Identity = 152/207 (73.43%), Postives = 161/207 (77.78%), Query Frame = 0 

Query: 1   MGSHGYYLPRIPITRRFRTHPFVFIPSSLPFCSDXXXXXXXXXXXXXXXQFEHVSSLQEV 60
           MG HGYYL RIP+ RRFRT    FIPSS PFCSD               Q E V S QEV
Sbjct: 18  MGRHGYYLSRIPVIRRFRTQYLAFIPSSNPFCSD--------YTQNNPNQIEQVPSHQEV 77

Query: 61  TLSTTSSQHSNPLEPLCLELVQKLRILLQQGRTGAAESLIKSVILSKSPFSSPSDLIPLF 120
           TLSTT +QH N  EPLC ELVQKLRILLQQ RTGAA+ LIKS+ILSKSPFSSP DLI LF
Sbjct: 78  TLSTTRNQHPNHPEPLCHELVQKLRILLQQERTGAAKRLIKSIILSKSPFSSPCDLIALF 137

Query: 121 SVHAPSLNHVFSKTLFMVFLDLKMTDDAIRLCTSMKKNGVVPAVVDTLNVLFKLLMSSKE 180
           SVH+P+L HVFS  L M FLDLKM DDAIRLCTSMK+NGVVPAV  TL+VLFKLLMSSKE
Sbjct: 138 SVHSPNLKHVFSNMLLMAFLDLKMLDDAIRLCTSMKENGVVPAVA-TLSVLFKLLMSSKE 197

Query: 181 FKKTLDFFSELVESGILPDKFMYGKAV 208
           F+KTLDFFSELVESGI PD FMYGKAV
Sbjct: 198 FRKTLDFFSELVESGIRPDSFMYGKAV 215

[Close]
BLAST of CsaV3_3G016400 vs. NCBI nr
Match: XP_022922939.1 (pentatricopeptide repeat-containing protein At5g12100, mitochondrial [Cucurbita moschata])

HSP 1 Score: 274.2 bits (700), Expect = 1.4e-69
Identity = 151/207 (72.95%), Postives = 161/207 (77.78%), Query Frame = 0 

Query: 1   MGSHGYYLPRIPITRRFRTHPFVFIPSSLPFCSDXXXXXXXXXXXXXXXQFEHVSSLQEV 60
           MG HGYYL RIP+ RRFRT    FIPSS PFCSD               Q E V S QEV
Sbjct: 18  MGRHGYYLSRIPVIRRFRTQYLAFIPSSNPFCSD--------STQNNPNQIEQVPSHQEV 77

Query: 61  TLSTTSSQHSNPLEPLCLELVQKLRILLQQGRTGAAESLIKSVILSKSPFSSPSDLIPLF 120
           TLS+T +QH N  EPLC ELVQKLRILLQQ RTGAA+ LIKS+ILSKSPFSSP DLI LF
Sbjct: 78  TLSSTRNQHPNHPEPLCHELVQKLRILLQQERTGAAKRLIKSIILSKSPFSSPFDLIALF 137

Query: 121 SVHAPSLNHVFSKTLFMVFLDLKMTDDAIRLCTSMKKNGVVPAVVDTLNVLFKLLMSSKE 180
           SVH+P+L HVFS  L M FLDLKM DDAIRLCTSMK+NGVVPAV  TL+VLFKLLMSSKE
Sbjct: 138 SVHSPNLKHVFSNMLLMAFLDLKMLDDAIRLCTSMKENGVVPAVA-TLSVLFKLLMSSKE 197

Query: 181 FKKTLDFFSELVESGILPDKFMYGKAV 208
           F+KTLDFFSELVESGI PD FMYGKAV
Sbjct: 198 FRKTLDFFSELVESGIRPDSFMYGKAV 215

[Close]
BLAST of CsaV3_3G016400 vs. TAIR10
Match: AT5G12100.1 (pentatricopeptide (PPR) repeat-containing protein)

HSP 1 Score: 70.9 bits (172), Expect = 4.3e-12
Identity = 44/118 (37.29%), Postives = 72/118 (61.02%), Query Frame = 0 

Query: 79  ELVQKLRILLQQGRTGAAESLIKSVILSKS-PFSSPSDLIPLFSVHAPSLNHVFSKTLFM 138
           E ++ LR+LLQQ R   A  ++ S++ S S PF+SP +L   FS+ +PSL H FS  L  
Sbjct: 57  EKLRNLRVLLQQNRIETARGVLSSLLRSDSTPFASPKELFSAFSLSSPSLKHDFSYLLLS 116

Query: 139 VFL-DLKMTDDAIRLCTSMKKNGVVPAVVDTLNVLFKLLMSSKEFKKTLDFFSELVES 195
           V L + KM  +A  L  +++  G+ P+  D+L +L   L+ +K+F+ T++ F  ++ES
Sbjct: 117 VLLNESKMISEAADLFFALRNEGIYPS-SDSLTLLLDHLVKTKQFRVTINVFLNILES 173

[Close]
BLAST of CsaV3_3G016400 vs. Swiss-Prot
Match: sp|Q9FMQ1|PP376_ARATH (Pentatricopeptide repeat-containing protein At5g12100, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g12100 PE=2 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 7.7e-11
Identity = 44/118 (37.29%), Postives = 72/118 (61.02%), Query Frame = 0 

Query: 79  ELVQKLRILLQQGRTGAAESLIKSVILSKS-PFSSPSDLIPLFSVHAPSLNHVFSKTLFM 138
           E ++ LR+LLQQ R   A  ++ S++ S S PF+SP +L   FS+ +PSL H FS  L  
Sbjct: 57  EKLRNLRVLLQQNRIETARGVLSSLLRSDSTPFASPKELFSAFSLSSPSLKHDFSYLLLS 116

Query: 139 VFL-DLKMTDDAIRLCTSMKKNGVVPAVVDTLNVLFKLLMSSKEFKKTLDFFSELVES 195
           V L + KM  +A  L  +++  G+ P+  D+L +L   L+ +K+F+ T++ F  ++ES
Sbjct: 117 VLLNESKMISEAADLFFALRNEGIYPS-SDSLTLLLDHLVKTKQFRVTINVFLNILES 173

[Close]
BLAST of CsaV3_3G016400 vs. TrEMBL
Match: tr|A0A0A0L693|A0A0A0L693_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G177910 PE=4 SV=1)

HSP 1 Score: 387.1 bits (993), Expect = 9.8e-104
Identity = 216/216 (100.00%), Postives = 216/216 (100.00%), Query Frame = 0 

Query: 1   MGSHGYYLPRIPITRRFRTHPFVFIPSSLPFCSDXXXXXXXXXXXXXXXQFEHVSSLQEV 60
           MGSHGYYLPRIPITRRFRTHPFVFIPSSLPFCSDXXXXXXXXXXXXXXXQFEHVSSLQEV
Sbjct: 1   MGSHGYYLPRIPITRRFRTHPFVFIPSSLPFCSDXXXXXXXXXXXXXXXQFEHVSSLQEV 60

Query: 61  TLSTTSSQHSNPLEPLCLELVQKLRILLQQGRTGAAESLIKSVILSKSPFSSPSDLIPLF 120
           TLSTTSSQHSNPLEPLCLELVQKLRILLQQGRTGAAESLIKSVILSKSPFSSPSDLIPLF
Sbjct: 61  TLSTTSSQHSNPLEPLCLELVQKLRILLQQGRTGAAESLIKSVILSKSPFSSPSDLIPLF 120

Query: 121 SVHAPSLNHVFSKTLFMVFLDLKMTDDAIRLCTSMKKNGVVPAVVDTLNVLFKLLMSSKE 180
           SVHAPSLNHVFSKTLFMVFLDLKMTDDAIRLCTSMKKNGVVPAVVDTLNVLFKLLMSSKE
Sbjct: 121 SVHAPSLNHVFSKTLFMVFLDLKMTDDAIRLCTSMKKNGVVPAVVDTLNVLFKLLMSSKE 180

Query: 181 FKKTLDFFSELVESGILPDKFMYGKAVEAAMKLGNM 217
           FKKTLDFFSELVESGILPDKFMYGKAVEAAMKLGNM
Sbjct: 181 FKKTLDFFSELVESGILPDKFMYGKAVEAAMKLGNM 216

[Close]
BLAST of CsaV3_3G016400 vs. TrEMBL
Match: tr|A0A1S3AYN1|A0A1S3AYN1_CUCME (pentatricopeptide repeat-containing protein At5g12100, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103484008 PE=4 SV=1)

HSP 1 Score: 338.2 bits (866), Expect = 5.2e-89
Identity = 181/216 (83.80%), Postives = 188/216 (87.04%), Query Frame = 0 

Query: 1   MGSHGYYLPRIPITRRFRTHPFVFIPSSLPFCSDXXXXXXXXXXXXXXXQFEHVSSLQEV 60
           MGSHGYYLPRI ITRRF THPF+FIPSS PF SD               Q E VSSLQEV
Sbjct: 1   MGSHGYYLPRITITRRFGTHPFIFIPSSQPFSSD----STSTPNQNNPNQVEQVSSLQEV 60

Query: 61  TLSTTSSQHSNPLEPLCLELVQKLRILLQQGRTGAAESLIKSVILSKSPFSSPSDLIPLF 120
           TLSTT++QHSNPLEPLCLELVQKLR+LLQQGRT AAESLIKSVILSKSPFSSPSDLIPLF
Sbjct: 61  TLSTTNNQHSNPLEPLCLELVQKLRVLLQQGRTCAAESLIKSVILSKSPFSSPSDLIPLF 120

Query: 121 SVHAPSLNHVFSKTLFMVFLDLKMTDDAIRLCTSMKKNGVVPAVVDTLNVLFKLLMSSKE 180
           SVH+PSLNHVFSKTLFM FLDLKMTDDAIRLCTSMKKNGVVPA V TLN LFKLLMSSKE
Sbjct: 121 SVHSPSLNHVFSKTLFMAFLDLKMTDDAIRLCTSMKKNGVVPA-VGTLNFLFKLLMSSKE 180

Query: 181 FKKTLDFFSELVESGILPDKFMYGKAVEAAMKLGNM 217
           FKKTLDFFSELVESGI PD+FMYGKAVEAA+KLG M
Sbjct: 181 FKKTLDFFSELVESGIQPDRFMYGKAVEAAIKLGKM 211

[Close]
BLAST of CsaV3_3G016400 vs. TrEMBL
Match: tr|A0A2P6RBG2|A0A2P6RBG2_ROSCH (Putative tetratricopeptide-like helical domain, pentacotripeptide-repeat region of PROPR OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr3g0471971 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 4.3e-27
Identity = 82/168 (48.81%), Postives = 111/168 (66.07%), Query Frame = 0 

Query: 56  SLQEVTLSTTSS-----QHSNPLEPLCLELVQKLRILLQQGRTGAAESLIKSVILSKSPF 115
           +L+ V+L T S       +SN  +    E V+KLRILLQQGRT  A   IKS+IL  SPF
Sbjct: 20  NLRSVSLCTDSDPRIQPSNSNHQDQQRHEQVRKLRILLQQGRTDTANRFIKSLILPTSPF 79

Query: 116 SSPSDLIPLFSVHAPSLNHVFSKTLFMVFLDLKMTDDAIRLCTSMKKNGVVPAVVDTLNV 175
           SSPSDL  LFS+ APS+   FS  L     + KM  +A+ L   M+K+ + P++  TLN+
Sbjct: 80  SSPSDLYNLFSLSAPSMTPTFSDMLLTACTESKMPSEAVELYGLMRKSDLRPSLA-TLNM 139

Query: 176 LFKLLMSSKEFKKTLDFFSELVES--GILPDKFMYGKAVEAAMKLGNM 217
           L + L++SK F+KTL+ FS++ ES  GI PDKF YGKAV+AA+KLG++
Sbjct: 140 LLECLVASKMFRKTLELFSQIFESGKGIRPDKFTYGKAVQAAVKLGDL 186

[Close]
BLAST of CsaV3_3G016400 vs. TrEMBL
Match: tr|A0A251NAE9|A0A251NAE9_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_7G119000 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 2.6e-24
Identity = 78/211 (36.97%), Postives = 118/211 (55.92%), Query Frame = 0 

Query: 8   LPRIPITRRFRTHPFVFIPSSLPFCSDXXXXXXXXXXXXXXXQFEHVSSLQEVTLSTTSS 67
           LP+   T   ++   + +P S   C+D                  H   ++  T +   +
Sbjct: 8   LPKSQFTAPNKSQNLISVPLSFSLCTDSAAGQ------------THQPQIEYQTENHNPT 67

Query: 68  QHSNPLEPLCLELVQKLRILLQQGRTGAAESLIKSVILSKSPFSSPSDLIPLFSVHAPSL 127
             +N  +    E V+KLR+LLQQGR+  A  LIKS+IL  SPFSSP+DL  LF + APS+
Sbjct: 68  SLTNLQDQQRHEQVRKLRVLLQQGRSETARRLIKSLILPNSPFSSPTDLYTLFYLSAPSM 127

Query: 128 NHVFSKTLFMVFLDLKMTDDAIRLCTSMKKNGVVPAVVDTLNVLFKLLMSSKEFKKTLDF 187
              FS  L     + KM  +A+ L   M++ G  P +  +LN + + L++SK+F KTL+ 
Sbjct: 128 KPTFSDMLLAACSESKMPKEAVELYGLMRETGTRPCLA-SLNAMLESLVTSKQFGKTLEL 187

Query: 188 FSELVES--GILPDKFMYGKAVEAAMKLGNM 217
           FSE+ ES  GI PD+F +GKAV+AA+K+G++
Sbjct: 188 FSEIFESGQGIRPDRFTFGKAVQAAVKMGDL 205

[Close]
BLAST of CsaV3_3G016400 vs. TrEMBL
Match: tr|B9SRF9|B9SRF9_RICCO (Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis OX=3988 GN=RCOM_0382000 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 1.3e-18
Identity = 63/138 (45.65%), Postives = 87/138 (63.04%), Query Frame = 0 

Query: 79  ELVQKLRILLQQGRTGAAESLIKSVILSKSPFSSPSDLIPLFSVHAPSLNHVFSKTLFMV 138
           E V KL+ILLQQ    AA SL KS+IL+KS FSSPSDL   FS  +  L    S  L  V
Sbjct: 56  EQVNKLQILLQQNCNEAAYSLAKSLILTKSTFSSPSDLFSCFSACSIPLRITLSDMLLSV 115

Query: 139 FLDLKMTDDAIRLCTSMKKNGVVPAVVDTLNVLFKLLMSSKEFKKTLDFFSELVESGILP 198
               KM  +A+ L   M+++G +P++V +L++LF  L++ K+F K +D F E+  SG   
Sbjct: 116 CCKSKMLREAVELYEFMRRDGKLPSLV-SLSLLFSCLVNEKQFVKVVDLFMEIENSGFRT 175

Query: 199 DKFMYGKAVEAAMKLGNM 217
           D FMY KA++AA+KL N+
Sbjct: 176 DTFMYAKAIQAAVKLQNL 192

The following BLAST results are available for this feature:
BLAST of CsaV3_3G016400 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN57298.11.5e-103100.00hypothetical protein Csa_3G177910 [Cucumis sativus][more]
XP_008439118.17.9e-8983.80PREDICTED: pentatricopeptide repeat-containing protein At5g12100, mitochondrial ... [more]
XP_022984191.11.1e-7172.64pentatricopeptide repeat-containing protein At5g12100, mitochondrial [Cucurbita ... [more]
XP_023552569.13.7e-7073.43pentatricopeptide repeat-containing protein At5g12100, mitochondrial [Cucurbita ... [more]
XP_022922939.11.4e-6972.95pentatricopeptide repeat-containing protein At5g12100, mitochondrial [Cucurbita ... [more]
BLAST of CsaV3_3G016400 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G12100.14.3e-1237.29pentatricopeptide (PPR) repeat-containing protein[more]
BLAST of CsaV3_3G016400 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9FMQ1|PP376_ARATH7.7e-1137.29Pentatricopeptide repeat-containing protein At5g12100, mitochondrial OS=Arabidop... [more]
BLAST of CsaV3_3G016400 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L693|A0A0A0L693_CUCSA9.8e-104100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G177910 PE=4 SV=1[more]
tr|A0A1S3AYN1|A0A1S3AYN1_CUCME5.2e-8983.80pentatricopeptide repeat-containing protein At5g12100, mitochondrial OS=Cucumis ... [more]
tr|A0A2P6RBG2|A0A2P6RBG2_ROSCH4.3e-2748.81Putative tetratricopeptide-like helical domain, pentacotripeptide-repeat region ... [more]
tr|A0A251NAE9|A0A251NAE9_PRUPE2.6e-2436.97Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_7G119000 PE=4 SV=1[more]
tr|B9SRF9|B9SRF9_RICCO1.3e-1845.65Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis OX=398... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G016400.1CsaV3_3G016400.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 250..366
e-value: 1.2E-37
score: 132.1
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 459..564
e-value: 1.1E-32
score: 114.8
coord: 118..249
e-value: 1.3E-18
score: 68.9
coord: 374..458
e-value: 4.3E-23
score: 83.6
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 673..822
e-value: 1.5E-36
score: 128.4
coord: 565..672
e-value: 6.2E-33
score: 116.5
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 516..550
e-value: 6.7E-9
score: 33.4
coord: 761..793
e-value: 1.2E-6
score: 26.3
coord: 690..723
e-value: 5.3E-7
score: 27.4
coord: 621..654
e-value: 1.2E-9
score: 35.8
coord: 482..515
e-value: 4.2E-10
score: 37.2
coord: 412..445
e-value: 1.0E-7
score: 29.6
coord: 725..757
e-value: 1.2E-6
score: 26.3
coord: 552..584
e-value: 2.5E-6
score: 25.3
coord: 271..304
e-value: 4.7E-10
score: 37.0
coord: 587..620
e-value: 1.0E-7
score: 29.7
coord: 306..339
e-value: 3.0E-10
score: 37.6
coord: 446..479
e-value: 2.5E-7
score: 28.5
coord: 376..410
e-value: 4.8E-7
score: 27.6
coord: 237..269
e-value: 7.5E-8
score: 30.1
coord: 341..374
e-value: 3.1E-4
score: 18.7
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 408..456
e-value: 4.8E-12
score: 45.8
coord: 346..387
e-value: 1.7E-8
score: 34.4
coord: 548..597
e-value: 1.7E-15
score: 56.8
coord: 478..527
e-value: 3.2E-14
score: 52.7
coord: 725..770
e-value: 1.2E-12
score: 47.6
coord: 618..664
e-value: 1.6E-14
score: 53.7
coord: 268..317
e-value: 1.6E-18
score: 66.5
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 690..720
e-value: 1.3E-5
score: 25.0
IPR002885Pentatricopeptide repeatPFAMPF12854PPR_1coord: 230..261
e-value: 5.4E-10
score: 38.7
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 619..653
score: 14.151
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 654..687
score: 5.338
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 304..338
score: 13.778
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 793..822
score: 6.434
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 549..583
score: 11.619
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 444..478
score: 11.334
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 514..548
score: 12.408
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 409..443
score: 12.288
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 199..233
score: 8.32
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 723..757
score: 12.638
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 234..268
score: 12.003
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 758..792
score: 10.402
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 584..618
score: 12.397
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 164..198
score: 8.1
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 128..162
score: 7.267
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 688..722
score: 10.38
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 269..303
score: 13.296
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 374..408
score: 11.148
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 479..513
score: 12.923
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 339..373
score: 10.03
NoneNo IPR availablePANTHERPTHR24015:SF931SUBFAMILY NOT NAMEDcoord: 751..819
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 689..768
coord: 751..819
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 35..698
NoneNo IPR availablePANTHERPTHR24015:SF931SUBFAMILY NOT NAMEDcoord: 689..768
coord: 35..698
NoneNo IPR availableSUPERFAMILYSSF81901HCP-likecoord: 350..476
coord: 548..660

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_3G016400CSPI03G16220Wild cucumber (PI 183967)cpicucB144
CsaV3_3G016400Cucsa.251360Cucumber (Gy14) v1cgycucB387
CsaV3_3G016400CmaCh16G001730Cucurbita maxima (Rimu)cmacucB0383
CsaV3_3G016400CmoCh16G001780Cucurbita moschata (Rifu)cmocucB0379
CsaV3_3G016400CsGy3G016310Cucumber (Gy14) v2cgybcucB117
CsaV3_3G016400Carg16719Silver-seed gourdcarcucB0909
CsaV3_3G016400Cla006246Watermelon (97103) v1cucwmB239
CsaV3_3G016400MELO3C006839Melon (DHL92) v3.5.1cucmeB236
CsaV3_3G016400ClCG05G007520Watermelon (Charleston Gray)cucwcgB225
CsaV3_3G016400Lsi05G013010Bottle gourd (USVL1VR-Ls)cuclsiB229
CsaV3_3G016400MELO3C006839.2Melon (DHL92) v3.6.1cucmedB230
CsaV3_3G016400Cla97C05G089400Watermelon (97103) v2cucwmbB206
CsaV3_3G016400Bhi01G000923Wax gourdcucwgoB272
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_3G016400Cucumber (Chinese Long) v3cuccucB122
CsaV3_3G016400Cucumber (Chinese Long) v3cuccucB125
CsaV3_3G016400Cucumber (Chinese Long) v3cuccucB152
CsaV3_3G016400Silver-seed gourdcarcucB0116
CsaV3_3G016400Silver-seed gourdcarcucB0748
CsaV3_3G016400Silver-seed gourdcarcucB0956
CsaV3_3G016400Silver-seed gourdcarcucB0978
CsaV3_3G016400Cucumber (Gy14) v2cgybcucB212
CsaV3_3G016400Cucumber (Gy14) v2cgybcucB216
CsaV3_3G016400Cucumber (Gy14) v2cgybcucB281
CsaV3_3G016400Cucumber (Gy14) v1cgycucB466
CsaV3_3G016400Cucumber (Gy14) v1cgycucB552
CsaV3_3G016400Cucurbita maxima (Rimu)cmacucB0332
CsaV3_3G016400Cucurbita maxima (Rimu)cmacucB0487
CsaV3_3G016400Cucurbita maxima (Rimu)cmacucB0711
CsaV3_3G016400Cucurbita maxima (Rimu)cmacucB0719
CsaV3_3G016400Cucurbita maxima (Rimu)cmacucB1060
CsaV3_3G016400Cucurbita moschata (Rifu)cmocucB0327
CsaV3_3G016400Cucurbita moschata (Rifu)cmocucB0476
CsaV3_3G016400Cucurbita moschata (Rifu)cmocucB0697
CsaV3_3G016400Cucurbita moschata (Rifu)cmocucB0706
CsaV3_3G016400Cucurbita moschata (Rifu)cmocucB1041
CsaV3_3G016400Cucurbita pepo (Zucchini)cpecucB0039
CsaV3_3G016400Cucurbita pepo (Zucchini)cpecucB0200
CsaV3_3G016400Cucurbita pepo (Zucchini)cpecucB0257
CsaV3_3G016400Cucurbita pepo (Zucchini)cpecucB0384
CsaV3_3G016400Cucurbita pepo (Zucchini)cpecucB0896
CsaV3_3G016400Cucurbita pepo (Zucchini)cpecucB0903
CsaV3_3G016400Wild cucumber (PI 183967)cpicucB265
CsaV3_3G016400Wild cucumber (PI 183967)cpicucB268
CsaV3_3G016400Bottle gourd (USVL1VR-Ls)cuclsiB171
CsaV3_3G016400Melon (DHL92) v3.5.1cucmeB165
CsaV3_3G016400Melon (DHL92) v3.5.1cucmeB178
CsaV3_3G016400Melon (DHL92) v3.6.1cucmedB154
CsaV3_3G016400Melon (DHL92) v3.6.1cucmedB169
CsaV3_3G016400Watermelon (Charleston Gray)cucwcgB212
CsaV3_3G016400Watermelon (Charleston Gray)cucwcgB257
CsaV3_3G016400Watermelon (97103) v1cucwmB271
CsaV3_3G016400Watermelon (97103) v1cucwmB291
CsaV3_3G016400Watermelon (97103) v2cucwmbB179
CsaV3_3G016400Watermelon (97103) v2cucwmbB237