Carg16719 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg16719
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	pentatricopeptide repeat-containing protein At5g12100, mitochondrial
Location	Cucurbita_argyrosperma_scaffold_087 : 123172 .. 127265 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTACTATCGCTTTTGCAAAATCTTTAAACCAACTGTTTGAGCTGACAATGGGAAGGCATGGCTATTATTTATCTAGAATTCCTGTCATTAGACGATTCAGAACTCAATATCTTGCATTTATCCCTTCCTCGAACCCATTTTGCTCTGATTCTACCCAGAACAACCCCAATCAAATTGAACAGGTTCCTAGTCATCAGGAAGTAACATTGAGCACCTCCAGGAACCAACATCCTAACCATCCAGAACCTTTGTGCCATGAGTTAGTTCAAAAGCTTCGGATTTTACTTCAACAGGAGCGCACGGGTGCTGCCAAGAGGCTCATTAAGTCTATAATTCTGTCCAAATCTCCTTTCTCATCACCTTGTGATCTCATTGCACTTTTTTCTGTCCATTCTCCCAACTTGAAGCATGTCTTTTCAAATATGTTGTTAATGGCGTTTTTGGATCTCAAAATGCTTGATGATGCCATAAGATTATGTACCTCAATGAAGGAAAATGGCGTTGTTCCTGCTGTGGCCACCCTCAGTGTTTTATTTAGACTTTTAATGTCTTCAAAAGAGTTTAGAAAAACGGTCGAATTTTTTTCTGAACTTGTCGAATCTGGTATTCGACCAGATAGCTTCATGTATGGTAAGGCAGTTGAGGCGGCAATAAAACTAGGGGAGACGAACAGAGCCTTTGATTTGATGTGTTGCATGAAGAAGATAGGGATTAGTCCTACTGTGTTTGTGTCTAATGTGCTAATTTCTGGTCTTTGCAAAGAGAAGAAGCTGATTGATGCACAGAAGATGTTTGATGAAATGATCAATACAAATTTGTCCCCGAATTCGGTAACTTACAATACCATTATCAATGGATATTGTAAGGTGGGAAAACTGGATAAAGCTTTTAGTTTGAAAGAGAGGATGAAGCAAGAAAATTTGGAACCTAATCTTGTAACATACAATTCTTTGCTAAGTGGACTCTGTCAGGCAAAGCAGATGGAGGAAGCAAAAAAGCTATTGCGTGAGATGGAAACTTATGGGTTTGCACCTGATGGATTTACTTATAGCATACTTTTTGATGGGTATCTGAGGTCTGGTGATGATGAAGCCTCAATAGTTCTGTATGGAGAAACAGTGAAGAAAGGGGTGAGGATAAATAAATATACTTGTTGTATTTTGTTGAATGGGTTATGTAAAGATGGGAAGGTGGAAAAAGCAGAGGAGATTCTGACGAAACTAATGATGGATGGACTGGTTCCGGATGAAATCCTTTTCAATGTACTAGTGGATGGTTACTGTCGAAAAGGAAATTTCGACGGTGCTATATCAACCATCCAACGGATGGAAAATCAAGGCTTAACACCCAATTGTATCACTTTTAATTCGTTGATCAATAAATTTTGTGAAATGAAGGAGATGGACAAGGCAGAGGAATGGCTGAGAAAGATGATAGCGAGGGAAGTTTGCCCTAGCATCGAAACGTATAACATCCTTCTCGATGGTTATGGACGGGCTTGTCTTTTTGATAGATGTTTCCAAGTTCTTGAAGAAATGGAAAGCAAAGGAATAAAGCCAAATGTGGTAAGCTATGGAACTCTTATCAATTGTCTCTGCAAGGGTGGTAGATTTGTTGAAGCTGAAGTAATTTTTGCTGACATGGATGGTAAAGGAGTTCTTCCAAATGCTCAAATTTATAATATGCTGATTGATTGTAAGTGCACATTAGGGAAAATGCAAGATGCTTTCAAGATTTTTGATGAAATGATTGATAGGAACATTACCCCGACCCTTTCGACGTACAACTCACTTATCAATGGACTCTGCAAGAAAGGAAGGGTAATTGAAGCAGAAGAATTAGTTAACCAAATTACAAACAGTAGTCTTACACCTGATGTGATCACATACAACTCCCTTATCCTTGGGCATTGCAGTTTTGGGGACCCCCAAAAAGGTCTCGAGATATACGAAACGTTGAAAAAGCAAGGCATCAATCCTACATTAATAACGTATCATGTTTTAATATCTGGATGCAGCGAGGTTGGTTTAGATACAGTTGAGAAACTGTTCGGCGAAATGTTACTCATGGATCTTGCTCCAGATAGAGTTGTTTATAATGCAATGATTTATTGCTACATAGAGAACGGAGATGTTCAAAAGGCATTTGTTTTGTACAAAAAGATGATCGATGAAAGAGTCGAACTAGACAAGATGACTTATAACAGCTTGATTTTAGGATGCTTGAGAGATGGTAAGGTTACAGAAGTAAGGAAACTTGTTGATGATATGAAGGCTAGAGGGTTGAGTCCTAAGGGTGACACTTACAATATCCTAGTGAAGGGACTTTGTGAACTTGGTGATTATGGCGAGGCACATGTATGGTATAAAGAAATGTTCAAAAACCATTTTTTGTTAAATGCCTCCGTTTGCAATCAACTCATTGATGGTCTTAAGAGAGAGGGGAGGTTTCAAGAAGCCCATCTTATTTTGTCTGAGATGCATGTCAAAGGACTGAGTGTCTGGAATTTGAGTAATCAACCTGCTGCATCTATGACCATGTGATATGAGGAATCTGTGAACACATTTGGCTATCACTGCATTGAAAAACGTTTCTGCAGTTGGCCTATCTTGCCATGAATGAGTTGGTAAGCAGGGTCCTCTTCTTAGCTTGTTCTTGTGCCGACTAGTAAACCTTAACGTTTATTTTTTTTTCTGTGATTCAGACAACTGAGCGGTGTAGGCTTCCTGCTGTGGCGTTTTGCTTGTTTCTGCTTCGGTAAGGCCATACGTCTAGTTTTCTACACCCTGGTTACTGATTGATTCATTTTCATTCTACATTGATGTTCCTTGCTGTTCATCGAGTCATTTATCAATGCATTTACCTTTTAGATTGGTTAATGATGTCTTTGAGCCAACATGCATCATTCTTTAAACACTTCGAACATTAGATATTGATCTTTAGTTGATGGCCCATTCATTGTGACTGCAATAGAGTACACAGCATTTACTTGAGGAGCATCTCTCATGTATTCTGTTAAATTTTGATTCGTTCTAGTGTTCGATTTTAAACGGACTGCAGATGGTGTTGAATGTAAATATTGAAGATTTGAAGTTAAGTTGATTACTTGTAAGCATGGCCAGAAACTTGGATTCAGGTGACGCAGAAGCATAAACAAAAACTTATAGTGTTAACTCGTTGCTACAATCCATTTACCAGAGAGGTTGCTCCGTCTTTCATGACAAGCCAAACCATGAGCAACAAAATTACTGTTCCGTAGACTATAAGAGAAAATTTTGAACTTTGTTGTTGAAATGGTCCCAACCTACAAGTAAAGTCTACTGTTTTAACCCAAAAATGATAGATCTCAGCTTCCTCAGCTCAAATGATTCCGTCGTGGAGTGCAGTAGCCTCAACAAGTCCCACAAAACCAGTGAATTTCAGAGCTTTTTGCACCTAAATCATAGTTCGCCAAAGGAATTGCGAATAAGAAAAGATAAAATCATAGAATGATTCCGTATGTAGTTTCCTTTTAGTCAGTCCTCTATACATCTCTCCTATATCCATCCAAATGTTAACAATGTAGCTTACGTTCTTGTGACATTTTTTTTCCAGCCAACAGTACAACAGGGGAGGAAAGCCCCAATCTCGTCGAAGAAAGGCTACAGAGAACTCGTTAGCATACGATGTCCTTTCCAGCCAAAGGTGCCACAAAGTTAGAGCTCTTCAAGTGAGATCCTACAGAGTCCAAAAAGGGCATTGAGGAGCTGGGAAGGGTAAAAACTGAATGAGTTTGCAAATTTGCAATGGAGGAAAACACACCATTTCATTACATTTTACACCAATTTGGAGATTGTTGTGAAGCTTTTCTTCAACCTTGTGAATTGAGACCCACGGAGTCGCAACATCTGACCCACCGCCGACGGCTGCTACTTCACTGCAGACCCACGCAGTCATCGACAACGTATCATTTTTCCTTTGTTCGCTCACCATAGCTATCTTGATTTCCAAGTAACTCAGCCATTTTCATCTTTATTGTTTCCCCAAAACTATAAGCCAAGAATTAAACATCTAAACTAAAAATTATATAAATTAAAATCTCAATGTTTTA

mRNA sequence

ATGGGTACTATCGCTTTTGCAAAATCTTTAAACCAACTGTTTGAGCTGACAATGGGAAGGCATGGCTATTATTTATCTAGAATTCCTGTCATTAGACGATTCAGAACTCAATATCTTGCATTTATCCCTTCCTCGAACCCATTTTGCTCTGATTCTACCCAGAACAACCCCAATCAAATTGAACAGGTTCCTAGTCATCAGGAAGTAACATTGAGCACCTCCAGGAACCAACATCCTAACCATCCAGAACCTTTGTGCCATGAGTTAGTTCAAAAGCTTCGGATTTTACTTCAACAGGAGCGCACGGGTGCTGCCAAGAGGCTCATTAAGTCTATAATTCTGTCCAAATCTCCTTTCTCATCACCTTGTGATCTCATTGCACTTTTTTCTGTCCATTCTCCCAACTTGAAGCATGTCTTTTCAAATATGTTGTTAATGGCGTTTTTGGATCTCAAAATGCTTGATGATGCCATAAGATTATGTACCTCAATGAAGGAAAATGGCGTTGTTCCTGCTGTGGCCACCCTCAGTGTTTTATTTAGACTTTTAATGTCTTCAAAAGAGTTTAGAAAAACGGTCGAATTTTTTTCTGAACTTGTCGAATCTGGTATTCGACCAGATAGCTTCATGTATGGTAAGGCAGTTGAGGCGGCAATAAAACTAGGGGAGACGAACAGAGCCTTTGATTTGATGTGTTGCATGAAGAAGATAGGGATTAGTCCTACTGTGTTTGTGTCTAATGTGCTAATTTCTGGTCTTTGCAAAGAGAAGAAGCTGATTGATGCACAGAAGATGTTTGATGAAATGATCAATACAAATTTGTCCCCGAATTCGGTAACTTACAATACCATTATCAATGGATATTGTAAGGTGGGAAAACTGGATAAAGCTTTTAGTTTGAAAGAGAGGATGAAGCAAGAAAATTTGGAACCTAATCTTGTAACATACAATTCTTTGCTAAGTGGACTCTGTCAGGCAAAGCAGATGGAGGAAGCAAAAAAGCTATTGCGTGAGATGGAAACTTATGGGTTTGCACCTGATGGATTTACTTATAGCATACTTTTTGATGGGTATCTGAGGTCTGGTGATGATGAAGCCTCAATAGTTCTGTATGGAGAAACAGTGAAGAAAGGGGTGAGGATAAATAAATATACTTGTTGTATTTTGTTGAATGGGTTATGTAAAGATGGGAAGGTGGAAAAAGCAGAGGAGATTCTGACGAAACTAATGATGGATGGACTGGTTCCGGATGAAATCCTTTTCAATGTACTAGTGGATGGTTACTGTCGAAAAGGAAATTTCGACGGTGCTATATCAACCATCCAACGGATGGAAAATCAAGGCTTAACACCCAATTGTATCACTTTTAATTCGTTGATCAATAAATTTTGTGAAATGAAGGAGATGGACAAGGCAGAGGAATGGCTGAGAAAGATGATAGCGAGGGAAGTTTGCCCTAGCATCGAAACGTATAACATCCTTCTCGATGGTTATGGACGGGCTTGTCTTTTTGATAGATGTTTCCAAGTTCTTGAAGAAATGGAAAGCAAAGGAATAAAGCCAAATGTGGTAAGCTATGGAACTCTTATCAATTGTCTCTGCAAGGGTGGTAGATTTGTTGAAGCTGAAGTAATTTTTGCTGACATGGATGGTAAAGGAGTTCTTCCAAATGCTCAAATTTATAATATGCTGATTGATTGTAAGTGCACATTAGGGAAAATGCAAGATGCTTTCAAGATTTTTGATGAAATGATTGATAGGAACATTACCCCGACCCTTTCGACGTACAACTCACTTATCAATGGACTCTGCAAGAAAGGAAGGGTAATTGAAGCAGAAGAATTAGTTAACCAAATTACAAACAGTAGTCTTACACCTGATGTGATCACATACAACTCCCTTATCCTTGGGCATTGCAGTTTTGGGGACCCCCAAAAAGGTCTCGAGATATACGAAACGTTGAAAAAGCAAGGCATCAATCCTACATTAATAACGTATCATGTTTTAATATCTGGATGCAGCGAGGTTGGTTTAGATACAGTTGAGAAACTGTTCGGCGAAATGTTACTCATGGATCTTGCTCCAGATAGAGTTGTTTATAATGCAATGATTTATTGCTACATAGAGAACGGAGATGTTCAAAAGGCATTTGTTTTGTACAAAAAGATGATCGATGAAAGAGTCGAACTAGACAAGATGACTTATAACAGCTTGATTTTAGGATGCTTGAGAGATGGTAAGGTTACAGAAGTAAGGAAACTTGTTGATGATATGAAGGCTAGAGGGTTGAGTCCTAAGGGTGACACTTACAATATCCTAGTGAAGGGACTTTGTGAACTTGGTGATTATGGCGAGGCACATACAACTGAGCGGTGTAGGCTTCCTGCTGTGGCGTTTTGCTTGTTTCTGCTTCGCCAACAGTACAACAGGGGAGGAAAGCCCCAATCTCGTCGAAGAAAGGCTACAGAGAACTCGTTAGCATACGATGTCCTTTCCAGCCAAAGGTGCCACAAAGTTAGAGCTCTTCAAGTGAGATCCTACAGAGTCCAAAAAGGGCATTGAGGAGCTGGGAAGGGTAAAAACTGAATGAGTTTGCAAATTTGCAATGGAGGAAAACACACCATTTCATTACATTTTACACCAATTTGGAGATTGTTGTGAAGCTTTTCTTCAACCTTGTGAATTGAGACCCACGGAGTCGCAACATCTGACCCACCGCCGACGGCTGCTACTTCACTGCAGACCCACGCAGTCATCGACAACGTATCATTTTTCCTTTGTTCGCTCACCATAGCTATCTTGATTTCCAAGTAACTCAGCCATTTTCATCTTTATTGTTTCCCCAAAACTATAAGCCAAGAATTAAACATCTAAACTAAAAATTATATAAATTAAAATCTCAATGTTTTA

Coding sequence (CDS)

ATGGGTACTATCGCTTTTGCAAAATCTTTAAACCAACTGTTTGAGCTGACAATGGGAAGGCATGGCTATTATTTATCTAGAATTCCTGTCATTAGACGATTCAGAACTCAATATCTTGCATTTATCCCTTCCTCGAACCCATTTTGCTCTGATTCTACCCAGAACAACCCCAATCAAATTGAACAGGTTCCTAGTCATCAGGAAGTAACATTGAGCACCTCCAGGAACCAACATCCTAACCATCCAGAACCTTTGTGCCATGAGTTAGTTCAAAAGCTTCGGATTTTACTTCAACAGGAGCGCACGGGTGCTGCCAAGAGGCTCATTAAGTCTATAATTCTGTCCAAATCTCCTTTCTCATCACCTTGTGATCTCATTGCACTTTTTTCTGTCCATTCTCCCAACTTGAAGCATGTCTTTTCAAATATGTTGTTAATGGCGTTTTTGGATCTCAAAATGCTTGATGATGCCATAAGATTATGTACCTCAATGAAGGAAAATGGCGTTGTTCCTGCTGTGGCCACCCTCAGTGTTTTATTTAGACTTTTAATGTCTTCAAAAGAGTTTAGAAAAACGGTCGAATTTTTTTCTGAACTTGTCGAATCTGGTATTCGACCAGATAGCTTCATGTATGGTAAGGCAGTTGAGGCGGCAATAAAACTAGGGGAGACGAACAGAGCCTTTGATTTGATGTGTTGCATGAAGAAGATAGGGATTAGTCCTACTGTGTTTGTGTCTAATGTGCTAATTTCTGGTCTTTGCAAAGAGAAGAAGCTGATTGATGCACAGAAGATGTTTGATGAAATGATCAATACAAATTTGTCCCCGAATTCGGTAACTTACAATACCATTATCAATGGATATTGTAAGGTGGGAAAACTGGATAAAGCTTTTAGTTTGAAAGAGAGGATGAAGCAAGAAAATTTGGAACCTAATCTTGTAACATACAATTCTTTGCTAAGTGGACTCTGTCAGGCAAAGCAGATGGAGGAAGCAAAAAAGCTATTGCGTGAGATGGAAACTTATGGGTTTGCACCTGATGGATTTACTTATAGCATACTTTTTGATGGGTATCTGAGGTCTGGTGATGATGAAGCCTCAATAGTTCTGTATGGAGAAACAGTGAAGAAAGGGGTGAGGATAAATAAATATACTTGTTGTATTTTGTTGAATGGGTTATGTAAAGATGGGAAGGTGGAAAAAGCAGAGGAGATTCTGACGAAACTAATGATGGATGGACTGGTTCCGGATGAAATCCTTTTCAATGTACTAGTGGATGGTTACTGTCGAAAAGGAAATTTCGACGGTGCTATATCAACCATCCAACGGATGGAAAATCAAGGCTTAACACCCAATTGTATCACTTTTAATTCGTTGATCAATAAATTTTGTGAAATGAAGGAGATGGACAAGGCAGAGGAATGGCTGAGAAAGATGATAGCGAGGGAAGTTTGCCCTAGCATCGAAACGTATAACATCCTTCTCGATGGTTATGGACGGGCTTGTCTTTTTGATAGATGTTTCCAAGTTCTTGAAGAAATGGAAAGCAAAGGAATAAAGCCAAATGTGGTAAGCTATGGAACTCTTATCAATTGTCTCTGCAAGGGTGGTAGATTTGTTGAAGCTGAAGTAATTTTTGCTGACATGGATGGTAAAGGAGTTCTTCCAAATGCTCAAATTTATAATATGCTGATTGATTGTAAGTGCACATTAGGGAAAATGCAAGATGCTTTCAAGATTTTTGATGAAATGATTGATAGGAACATTACCCCGACCCTTTCGACGTACAACTCACTTATCAATGGACTCTGCAAGAAAGGAAGGGTAATTGAAGCAGAAGAATTAGTTAACCAAATTACAAACAGTAGTCTTACACCTGATGTGATCACATACAACTCCCTTATCCTTGGGCATTGCAGTTTTGGGGACCCCCAAAAAGGTCTCGAGATATACGAAACGTTGAAAAAGCAAGGCATCAATCCTACATTAATAACGTATCATGTTTTAATATCTGGATGCAGCGAGGTTGGTTTAGATACAGTTGAGAAACTGTTCGGCGAAATGTTACTCATGGATCTTGCTCCAGATAGAGTTGTTTATAATGCAATGATTTATTGCTACATAGAGAACGGAGATGTTCAAAAGGCATTTGTTTTGTACAAAAAGATGATCGATGAAAGAGTCGAACTAGACAAGATGACTTATAACAGCTTGATTTTAGGATGCTTGAGAGATGGTAAGGTTACAGAAGTAAGGAAACTTGTTGATGATATGAAGGCTAGAGGGTTGAGTCCTAAGGGTGACACTTACAATATCCTAGTGAAGGGACTTTGTGAACTTGGTGATTATGGCGAGGCACATACAACTGAGCGGTGTAGGCTTCCTGCTGTGGCGTTTTGCTTGTTTCTGCTTCGCCAACAGTACAACAGGGGAGGAAAGCCCCAATCTCGTCGAAGAAAGGCTACAGAGAACTCGTTAGCATACGATGTCCTTTCCAGCCAAAGGTGCCACAAAGTTAGAGCTCTTCAAGTGAGATCCTACAGAGTCCAAAAAGGGCATTGA

Protein sequence

MGTIAFAKSLNQLFELTMGRHGYYLSRIPVIRRFRTQYLAFIPSSNPFCSDSTQNNPNQIEQVPSHQEVTLSTSRNQHPNHPEPLCHELVQKLRILLQQERTGAAKRLIKSIILSKSPFSSPCDLIALFSVHSPNLKHVFSNMLLMAFLDLKMLDDAIRLCTSMKENGVVPAVATLSVLFRLLMSSKEFRKTVEFFSELVESGIRPDSFMYGKAVEAAIKLGETNRAFDLMCCMKKIGISPTVFVSNVLISGLCKEKKLIDAQKMFDEMINTNLSPNSVTYNTIINGYCKVGKLDKAFSLKERMKQENLEPNLVTYNSLLSGLCQAKQMEEAKKLLREMETYGFAPDGFTYSILFDGYLRSGDDEASIVLYGETVKKGVRINKYTCCILLNGLCKDGKVEKAEEILTKLMMDGLVPDEILFNVLVDGYCRKGNFDGAISTIQRMENQGLTPNCITFNSLINKFCEMKEMDKAEEWLRKMIAREVCPSIETYNILLDGYGRACLFDRCFQVLEEMESKGIKPNVVSYGTLINCLCKGGRFVEAEVIFADMDGKGVLPNAQIYNMLIDCKCTLGKMQDAFKIFDEMIDRNITPTLSTYNSLINGLCKKGRVIEAEELVNQITNSSLTPDVITYNSLILGHCSFGDPQKGLEIYETLKKQGINPTLITYHVLISGCSEVGLDTVEKLFGEMLLMDLAPDRVVYNAMIYCYIENGDVQKAFVLYKKMIDERVELDKMTYNSLILGCLRDGKVTEVRKLVDDMKARGLSPKGDTYNILVKGLCELGDYGEAHTTERCRLPAVAFCLFLLRQQYNRGGKPQSRRRKATENSLAYDVLSSQRCHKVRALQVRSYRVQKGH

Homology

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BLAST of Carg16719 vs. NCBI nr
Match: XP_022984191.1 (pentatricopeptide repeat-containing protein At5g12100, mitochondrial [Cucurbita maxima] >XP_022984192.1 pentatricopeptide repeat-containing protein At5g12100, mitochondrial [Cucurbita maxima] >XP_022984193.1 pentatricopeptide repeat-containing protein At5g12100, mitochondrial [Cucurbita maxima])

HSP 1 Score: 417.9 bits (1073), Expect = 8.1e-113
Identity = 213/220 (96.82%), Postives = 218/220 (99.09%), Query Frame = 0


Query: 1   MGTIAFAKSLNQLFELTMGRHGYYLSRIPVIRRFRTQYLAFIPSSNPFCSDSTQNNPNQI 60
           MGTIAFAKSLNQLFELTMGRHGYYLSRIPVIRRFRTQYLAFIPSSNPFCSDSTQNNPNQI
Sbjct: 1   MGTIAFAKSLNQLFELTMGRHGYYLSRIPVIRRFRTQYLAFIPSSNPFCSDSTQNNPNQI 60

Query: 61  EQVPSHQEVTLSTSRNQHPNHPEPLCHELVQKLRILLQQERTGAAKRLIKSIILSKSPFS 120
           EQV SHQEVT ST+RNQHPNHPEPLCHELVQKLRILLQQERTGAAKRLIKSIILSKSPFS
Sbjct: 61  EQVTSHQEVTSSTTRNQHPNHPEPLCHELVQKLRILLQQERTGAAKRLIKSIILSKSPFS 120

Query: 121 SPCDLIALFSVHSPNLKHVFSNMLLMAFLDLKMLDDAIRLCTSMKENGVVPAVATLSVLF 180
           SPCDLIALFSVHSPNLKHVFSNMLLMAFLDLKMLDDAIRLCTSMKENGVVPAVATLSVLF
Sbjct: 121 SPCDLIALFSVHSPNLKHVFSNMLLMAFLDLKMLDDAIRLCTSMKENGVVPAVATLSVLF 180

Query: 181 RLLMSSKEFRKTVEFFSELVESGIRPDSFMYGKAVEAAIK 221
           +LLMSSKEFRKT++FFSELVESGIRPDSFMYGKAVEA+IK
Sbjct: 181 KLLMSSKEFRKTLDFFSELVESGIRPDSFMYGKAVEASIK 220

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BLAST of Carg16719 vs. NCBI nr
Match: XP_023552569.1 (pentatricopeptide repeat-containing protein At5g12100, mitochondrial [Cucurbita pepo subsp. pepo] >XP_023552570.1 pentatricopeptide repeat-containing protein At5g12100, mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 413.3 bits (1061), Expect = 2.0e-111
Identity = 210/215 (97.67%), Postives = 214/215 (99.53%), Query Frame = 0


Query: 1   MGTIAFAKSLNQLFELTMGRHGYYLSRIPVIRRFRTQYLAFIPSSNPFCSDSTQNNPNQI 60
           MGTIAFAKSLNQLFELTMGRHGYYLSRIPVIRRFRTQYLAFIPSSNPFCSD TQNNPNQI
Sbjct: 1   MGTIAFAKSLNQLFELTMGRHGYYLSRIPVIRRFRTQYLAFIPSSNPFCSDYTQNNPNQI 60

Query: 61  EQVPSHQEVTLSTSRNQHPNHPEPLCHELVQKLRILLQQERTGAAKRLIKSIILSKSPFS 120
           EQVPSHQEVTLST+RNQHPNHPEPLCHELVQKLRILLQQERTGAAKRLIKSIILSKSPFS
Sbjct: 61  EQVPSHQEVTLSTTRNQHPNHPEPLCHELVQKLRILLQQERTGAAKRLIKSIILSKSPFS 120

Query: 121 SPCDLIALFSVHSPNLKHVFSNMLLMAFLDLKMLDDAIRLCTSMKENGVVPAVATLSVLF 180
           SPCDLIALFSVHSPNLKHVFSNMLLMAFLDLKMLDDAIRLCTSMKENGVVPAVATLSVLF
Sbjct: 121 SPCDLIALFSVHSPNLKHVFSNMLLMAFLDLKMLDDAIRLCTSMKENGVVPAVATLSVLF 180

Query: 181 RLLMSSKEFRKTVEFFSELVESGIRPDSFMYGKAV 216
           +LLMSSKEFRKT++FFSELVESGIRPDSFMYGKAV
Sbjct: 181 KLLMSSKEFRKTLDFFSELVESGIRPDSFMYGKAV 215

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BLAST of Carg16719 vs. NCBI nr
Match: XP_022922939.1 (pentatricopeptide repeat-containing protein At5g12100, mitochondrial [Cucurbita moschata])

HSP 1 Score: 409.8 bits (1052), Expect = 2.2e-110
Identity = 209/215 (97.21%), Postives = 214/215 (99.53%), Query Frame = 0


Query: 1   MGTIAFAKSLNQLFELTMGRHGYYLSRIPVIRRFRTQYLAFIPSSNPFCSDSTQNNPNQI 60
           MGTIAFAKSLNQLFELTMGRHGYYLSRIPVIRRFRTQYLAFIPSSNPFCSDSTQNNPNQI
Sbjct: 1   MGTIAFAKSLNQLFELTMGRHGYYLSRIPVIRRFRTQYLAFIPSSNPFCSDSTQNNPNQI 60

Query: 61  EQVPSHQEVTLSTSRNQHPNHPEPLCHELVQKLRILLQQERTGAAKRLIKSIILSKSPFS 120
           EQVPSHQEVTLS++RNQHPNHPEPLCHELVQKLRILLQQERTGAAKRLIKSIILSKSPFS
Sbjct: 61  EQVPSHQEVTLSSTRNQHPNHPEPLCHELVQKLRILLQQERTGAAKRLIKSIILSKSPFS 120

Query: 121 SPCDLIALFSVHSPNLKHVFSNMLLMAFLDLKMLDDAIRLCTSMKENGVVPAVATLSVLF 180
           SP DLIALFSVHSPNLKHVFSNMLLMAFLDLKMLDDAIRLCTSMKENGVVPAVATLSVLF
Sbjct: 121 SPFDLIALFSVHSPNLKHVFSNMLLMAFLDLKMLDDAIRLCTSMKENGVVPAVATLSVLF 180

Query: 181 RLLMSSKEFRKTVEFFSELVESGIRPDSFMYGKAV 216
           +LLMSSKEFRKT++FFSELVESGIRPDSFMYGKAV
Sbjct: 181 KLLMSSKEFRKTLDFFSELVESGIRPDSFMYGKAV 215

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BLAST of Carg16719 vs. NCBI nr
Match: XP_008439118.1 (PREDICTED: pentatricopeptide repeat-containing protein At5g12100, mitochondrial [Cucumis melo])

HSP 1 Score: 311.2 bits (796), Expect = 1.1e-80
Identity = 165/220 (75.00%), Postives = 182/220 (82.73%), Query Frame = 0


Query: 18  MGRHGYYLSRIPVIRRFRTQYLAFIPSSNPFCSDST----QNNPNQIEQVPSHQEVTLST 77
           MG HGYYL RI + RRF T    FIPSS PF SDST    QNNPNQ+EQV S QEVTLST
Sbjct: 1   MGSHGYYLPRITITRRFGTHPFIFIPSSQPFSSDSTSTPNQNNPNQVEQVSSLQEVTLST 60

Query: 78  SRNQHPNHPEPLCHELVQKLRILLQQERTGAAKRLIKSIILSKSPFSSPCDLIALFSVHS 137
           + NQH N  EPLC ELVQKLR+LLQQ RT AA+ LIKS+ILSKSPFSSP DLI LFSVHS
Sbjct: 61  TNNQHSNPLEPLCLELVQKLRVLLQQGRTCAAESLIKSVILSKSPFSSPSDLIPLFSVHS 120

Query: 138 PNLKHVFSNMLLMAFLDLKMLDDAIRLCTSMKENGVVPAVATLSVLFRLLMSSKEFRKTV 197
           P+L HVFS  L MAFLDLKM DDAIRLCTSMK+NGVVPAV TL+ LF+LLMSSKEF+KT+
Sbjct: 121 PSLNHVFSKTLFMAFLDLKMTDDAIRLCTSMKKNGVVPAVGTLNFLFKLLMSSKEFKKTL 180

Query: 198 EFFSELVESGIRPDSFMYGKAVEAAIKLGETNRAFDLMCC 234
           +FFSELVESGI+PD FMYGKAVEAAIKLG+ N+A  L+CC
Sbjct: 181 DFFSELVESGIQPDRFMYGKAVEAAIKLGKMNKACHLVCC 220

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BLAST of Carg16719 vs. NCBI nr
Match: KGN57298.1 (hypothetical protein Csa_3G177910 [Cucumis sativus])

HSP 1 Score: 279.6 bits (714), Expect = 3.4e-71
Identity = 154/214 (71.96%), Postives = 168/214 (78.50%), Query Frame = 0


Query: 18  MGRHGYYLSRIPVIRRFRTQYLAFIPSSNPFCSD--------STQNNPNQIEQVPSHQEV 77
           MG HGYYL RIP+ RRFRT    FIPSS PFCSD               Q E V S QEV
Sbjct: 1   MGSHGYYLPRIPITRRFRTHPFVFIPSSLPFCSDXXXXXXXXXXXXXXXQFEHVSSLQEV 60

Query: 78  TLSTSRNQHPNHPEPLCHELVQKLRILLQQERTGAAKRLIKSIILSKSPFSSPCDLIALF 137
           TLST+ +QH N  EPLC ELVQKLRILLQQ RTGAA+ LIKS+ILSKSPFSSP DLI LF
Sbjct: 61  TLSTTSSQHSNPLEPLCLELVQKLRILLQQGRTGAAESLIKSVILSKSPFSSPSDLIPLF 120

Query: 138 SVHSPNLKHVFSNMLLMAFLDLKMLDDAIRLCTSMKENGVVPAVA-TLSVLFRLLMSSKE 197
           SVH+P+L HVFS  L M FLDLKM DDAIRLCTSMK+NGVVPAV  TL+VLF+LLMSSKE
Sbjct: 121 SVHAPSLNHVFSKTLFMVFLDLKMTDDAIRLCTSMKKNGVVPAVVDTLNVLFKLLMSSKE 180

Query: 198 FRKTVEFFSELVESGIRPDSFMYGKAVEAAIKLG 223
           F+KT++FFSELVESGI PD FMYGKAVEAA+KLG
Sbjct: 181 FKKTLDFFSELVESGILPDKFMYGKAVEAAMKLG 214

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BLAST of Carg16719 vs. TAIR10
Match: AT5G12100.1 (pentatricopeptide (PPR) repeat-containing protein)

HSP 1 Score: 79.3 bits (194), Expect = 1.2e-14
Identity = 46/120 (38.33%), Postives = 77/120 (64.17%), Query Frame = 0


Query: 88  ELVQKLRILLQQERTGAAKRLIKSIILSKS-PFSSPCDLIALFSVHSPNLKHVFSNMLLM 147
           E ++ LR+LLQQ R   A+ ++ S++ S S PF+SP +L + FS+ SP+LKH FS +LL 
Sbjct: 57  EKLRNLRVLLQQNRIETARGVLSSLLRSDSTPFASPKELFSAFSLSSPSLKHDFSYLLLS 116

Query: 148 AFL-DLKMLDDAIRLCTSMKENGVVPAVATLSVLFRLLMSSKEFRKTVEFFSELVESGIR 206
             L + KM+ +A  L  +++  G+ P+  +L++L   L+ +K+FR T+  F  ++ES  R
Sbjct: 117 VLLNESKMISEAADLFFALRNEGIYPSSDSLTLLLDHLVKTKQFRVTINVFLNILESDFR 176

[Close]

BLAST of Carg16719 vs. Swiss-Prot
Match: sp|Q9FMQ1|PP376_ARATH (Pentatricopeptide repeat-containing protein At5g12100, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g12100 PE=2 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 2.2e-13
Identity = 46/120 (38.33%), Postives = 77/120 (64.17%), Query Frame = 0


Query: 88  ELVQKLRILLQQERTGAAKRLIKSIILSKS-PFSSPCDLIALFSVHSPNLKHVFSNMLLM 147
           E ++ LR+LLQQ R   A+ ++ S++ S S PF+SP +L + FS+ SP+LKH FS +LL 
Sbjct: 57  EKLRNLRVLLQQNRIETARGVLSSLLRSDSTPFASPKELFSAFSLSSPSLKHDFSYLLLS 116

Query: 148 AFL-DLKMLDDAIRLCTSMKENGVVPAVATLSVLFRLLMSSKEFRKTVEFFSELVESGIR 206
             L + KM+ +A  L  +++  G+ P+  +L++L   L+ +K+FR T+  F  ++ES  R
Sbjct: 117 VLLNESKMISEAADLFFALRNEGIYPSSDSLTLLLDHLVKTKQFRVTINVFLNILESDFR 176

[Close]

BLAST of Carg16719 vs. TrEMBL
Match: tr|A0A1S3AYN1|A0A1S3AYN1_CUCME (pentatricopeptide repeat-containing protein At5g12100, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103484008 PE=4 SV=1)

HSP 1 Score: 311.2 bits (796), Expect = 7.1e-81
Identity = 165/220 (75.00%), Postives = 182/220 (82.73%), Query Frame = 0


Query: 18  MGRHGYYLSRIPVIRRFRTQYLAFIPSSNPFCSDST----QNNPNQIEQVPSHQEVTLST 77
           MG HGYYL RI + RRF T    FIPSS PF SDST    QNNPNQ+EQV S QEVTLST
Sbjct: 1   MGSHGYYLPRITITRRFGTHPFIFIPSSQPFSSDSTSTPNQNNPNQVEQVSSLQEVTLST 60

Query: 78  SRNQHPNHPEPLCHELVQKLRILLQQERTGAAKRLIKSIILSKSPFSSPCDLIALFSVHS 137
           + NQH N  EPLC ELVQKLR+LLQQ RT AA+ LIKS+ILSKSPFSSP DLI LFSVHS
Sbjct: 61  TNNQHSNPLEPLCLELVQKLRVLLQQGRTCAAESLIKSVILSKSPFSSPSDLIPLFSVHS 120

Query: 138 PNLKHVFSNMLLMAFLDLKMLDDAIRLCTSMKENGVVPAVATLSVLFRLLMSSKEFRKTV 197
           P+L HVFS  L MAFLDLKM DDAIRLCTSMK+NGVVPAV TL+ LF+LLMSSKEF+KT+
Sbjct: 121 PSLNHVFSKTLFMAFLDLKMTDDAIRLCTSMKKNGVVPAVGTLNFLFKLLMSSKEFKKTL 180

Query: 198 EFFSELVESGIRPDSFMYGKAVEAAIKLGETNRAFDLMCC 234
           +FFSELVESGI+PD FMYGKAVEAAIKLG+ N+A  L+CC
Sbjct: 181 DFFSELVESGIQPDRFMYGKAVEAAIKLGKMNKACHLVCC 220

[Close]

BLAST of Carg16719 vs. TrEMBL
Match: tr|A0A0A0L693|A0A0A0L693_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G177910 PE=4 SV=1)

HSP 1 Score: 279.6 bits (714), Expect = 2.3e-71
Identity = 154/214 (71.96%), Postives = 168/214 (78.50%), Query Frame = 0


Query: 18  MGRHGYYLSRIPVIRRFRTQYLAFIPSSNPFCSD--------STQNNPNQIEQVPSHQEV 77
           MG HGYYL RIP+ RRFRT    FIPSS PFCSD               Q E V S QEV
Sbjct: 1   MGSHGYYLPRIPITRRFRTHPFVFIPSSLPFCSDXXXXXXXXXXXXXXXQFEHVSSLQEV 60

Query: 78  TLSTSRNQHPNHPEPLCHELVQKLRILLQQERTGAAKRLIKSIILSKSPFSSPCDLIALF 137
           TLST+ +QH N  EPLC ELVQKLRILLQQ RTGAA+ LIKS+ILSKSPFSSP DLI LF
Sbjct: 61  TLSTTSSQHSNPLEPLCLELVQKLRILLQQGRTGAAESLIKSVILSKSPFSSPSDLIPLF 120

Query: 138 SVHSPNLKHVFSNMLLMAFLDLKMLDDAIRLCTSMKENGVVPAVA-TLSVLFRLLMSSKE 197
           SVH+P+L HVFS  L M FLDLKM DDAIRLCTSMK+NGVVPAV  TL+VLF+LLMSSKE
Sbjct: 121 SVHAPSLNHVFSKTLFMVFLDLKMTDDAIRLCTSMKKNGVVPAVVDTLNVLFKLLMSSKE 180

Query: 198 FRKTVEFFSELVESGIRPDSFMYGKAVEAAIKLG 223
           F+KT++FFSELVESGI PD FMYGKAVEAA+KLG
Sbjct: 181 FKKTLDFFSELVESGILPDKFMYGKAVEAAMKLG 214

[Close]

BLAST of Carg16719 vs. TrEMBL
Match: tr|A0A251NAE9|A0A251NAE9_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_7G119000 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 2.1e-32
Identity = 91/202 (45.05%), Postives = 130/202 (64.36%), Query Frame = 0


Query: 35  RTQYLAFIPSSNPFCSDST--QNNPNQIE-QVPSHQEVTLSTSRNQHPNHPEPLCHELVQ 94
           ++Q L  +P S   C+DS   Q +  QIE Q  +H   +L+  ++Q         HE V+
Sbjct: 18  KSQNLISVPLSFSLCTDSAAGQTHQPQIEYQTENHNPTSLTNLQDQQR-------HEQVR 77

Query: 95  KLRILLQQERTGAAKRLIKSIILSKSPFSSPCDLIALFSVHSPNLKHVFSNMLLMAFLDL 154
           KLR+LLQQ R+  A+RLIKS+IL  SPFSSP DL  LF + +P++K  FS+MLL A  + 
Sbjct: 78  KLRVLLQQGRSETARRLIKSLILPNSPFSSPTDLYTLFYLSAPSMKPTFSDMLLAACSES 137

Query: 155 KMLDDAIRLCTSMKENGVVPAVATLSVLFRLLMSSKEFRKTVEFFSELVES--GIRPDSF 214
           KM  +A+ L   M+E G  P +A+L+ +   L++SK+F KT+E FSE+ ES  GIRPD F
Sbjct: 138 KMPKEAVELYGLMRETGTRPCLASLNAMLESLVTSKQFGKTLELFSEIFESGQGIRPDRF 197

Query: 215 MYGKAVEAAIKLGETNRAFDLM 232
            +GKAV+AA+K+G+  RA  L+
Sbjct: 198 TFGKAVQAAVKMGDLERAGQLV 212

[Close]

BLAST of Carg16719 vs. TrEMBL
Match: tr|A0A2P6RBG2|A0A2P6RBG2_ROSCH (Putative tetratricopeptide-like helical domain, pentacotripeptide-repeat region of PROPR OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr3g0471971 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 7.9e-32
Identity = 88/181 (48.62%), Postives = 121/181 (66.85%), Query Frame = 0


Query: 57  PNQIEQVPSHQEVTLSTSRNQ--HPNHPEPLCHELVQKLRILLQQERTGAAKRLIKSIIL 116
           P + + + S    T S  R Q  + NH +   HE V+KLRILLQQ RT  A R IKS+IL
Sbjct: 15  PTKTQNLRSVSLCTDSDPRIQPSNSNHQDQQRHEQVRKLRILLQQGRTDTANRFIKSLIL 74

Query: 117 SKSPFSSPCDLIALFSVHSPNLKHVFSNMLLMAFLDLKMLDDAIRLCTSMKENGVVPAVA 176
             SPFSSP DL  LFS+ +P++   FS+MLL A  + KM  +A+ L   M+++ + P++A
Sbjct: 75  PTSPFSSPSDLYNLFSLSAPSMTPTFSDMLLTACTESKMPSEAVELYGLMRKSDLRPSLA 134

Query: 177 TLSVLFRLLMSSKEFRKTVEFFSELVES--GIRPDSFMYGKAVEAAIKLGETNRAFDLMC 234
           TL++L   L++SK FRKT+E FS++ ES  GIRPD F YGKAV+AA+KLG+  RA +L+ 
Sbjct: 135 TLNMLLECLVASKMFRKTLELFSQIFESGKGIRPDKFTYGKAVQAAVKLGDLTRAVELVE 194

[Close]

BLAST of Carg16719 vs. TrEMBL
Match: tr|B9SRF9|B9SRF9_RICCO (Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis OX=3988 GN=RCOM_0382000 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 2.8e-21
Identity = 64/135 (47.41%), Postives = 89/135 (65.93%), Query Frame = 0


Query: 87  HELVQKLRILLQQERTGAAKRLIKSIILSKSPFSSPCDLIALFSVHSPNLKHVFSNMLLM 146
           +E V KL+ILLQQ    AA  L KS+IL+KS FSSP DL + FS  S  L+   S+MLL 
Sbjct: 55  YEQVNKLQILLQQNCNEAAYSLAKSLILTKSTFSSPSDLFSCFSACSIPLRITLSDMLLS 114

Query: 147 AFLDLKMLDDAIRLCTSMKENGVVPAVATLSVLFRLLMSSKEFRKTVEFFSELVESGIRP 206
                KML +A+ L   M+ +G +P++ +LS+LF  L++ K+F K V+ F E+  SG R 
Sbjct: 115 VCCKSKMLREAVELYEFMRRDGKLPSLVSLSLLFSCLVNEKQFVKVVDLFMEIENSGFRT 174

Query: 207 DSFMYGKAVEAAIKL 222
           D+FMY KA++AA+KL
Sbjct: 175 DTFMYAKAIQAAVKL 189

The following BLAST results are available for this feature:

BLAST of Carg16719 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022984191.1	8.1e-113	96.82	pentatricopeptide repeat-containing protein At5g12100, mitochondrial [Cucurbita ...	[more]
XP_023552569.1	2.0e-111	97.67	pentatricopeptide repeat-containing protein At5g12100, mitochondrial [Cucurbita ...	[more]
XP_022922939.1	2.2e-110	97.21	pentatricopeptide repeat-containing protein At5g12100, mitochondrial [Cucurbita ...	[more]
XP_008439118.1	1.1e-80	75.00	PREDICTED: pentatricopeptide repeat-containing protein At5g12100, mitochondrial ...	[more]
KGN57298.1	3.4e-71	71.96	hypothetical protein Csa_3G177910 [Cucumis sativus]	[more]

BLAST of Carg16719 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G12100.1	1.2e-14	38.33	pentatricopeptide (PPR) repeat-containing protein	[more]

BLAST of Carg16719 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9FMQ1\|PP376_ARATH	2.2e-13	38.33	Pentatricopeptide repeat-containing protein At5g12100, mitochondrial OS=Arabidop...	[more]

BLAST of Carg16719 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3AYN1\|A0A1S3AYN1_CUCME	7.1e-81	75.00	pentatricopeptide repeat-containing protein At5g12100, mitochondrial OS=Cucumis ...	[more]
tr\|A0A0A0L693\|A0A0A0L693_CUCSA	2.3e-71	71.96	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G177910 PE=4 SV=1	[more]
tr\|A0A251NAE9\|A0A251NAE9_PRUPE	2.1e-32	45.05	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_7G119000 PE=4 SV=1	[more]
tr\|A0A2P6RBG2\|A0A2P6RBG2_ROSCH	7.9e-32	48.62	Putative tetratricopeptide-like helical domain, pentacotripeptide-repeat region ...	[more]
tr\|B9SRF9\|B9SRF9_RICCO	2.8e-21	47.41	Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis OX=398...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR002885	Pentatricopeptide_repeat
IPR011990	TPR-like_helical_dom_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg16719-RA	Carg16719-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 471..573 e-value: 1.5E-30 score: 108.6
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 258..370 e-value: 6.1E-37 score: 129.8 coord: 677..820 e-value: 1.6E-29 score: 105.4
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 80..257 e-value: 6.5E-21 score: 76.5 coord: 574..676 e-value: 1.9E-31 score: 110.8 coord: 373..470 e-value: 6.6E-26 score: 92.7
IPR002885	Pentatricopeptide repeat	PFAM	PF12854	PPR_1	coord: 377..407 e-value: 6.4E-7 score: 28.9 coord: 238..269 e-value: 3.3E-7 score: 29.8
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 556..605 e-value: 4.0E-16 score: 58.8 coord: 486..535 e-value: 4.5E-14 score: 52.2 coord: 276..325 e-value: 4.0E-20 score: 71.6 coord: 626..674 e-value: 1.6E-11 score: 44.1 coord: 732..778 e-value: 2.0E-13 score: 50.2 coord: 416..464 e-value: 6.5E-12 score: 45.3
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 698..727 e-value: 2.9E-6 score: 27.0 coord: 142..169 e-value: 1.1 score: 9.5
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 524..558 e-value: 1.1E-8 score: 32.7 coord: 279..312 e-value: 9.6E-11 score: 39.2 coord: 560..592 e-value: 1.3E-6 score: 26.2 coord: 698..731 e-value: 4.8E-8 score: 30.7 coord: 420..453 e-value: 7.6E-8 score: 30.1 coord: 314..347 e-value: 1.7E-10 score: 38.4 coord: 384..418 e-value: 5.0E-8 score: 30.6 coord: 454..487 e-value: 4.3E-7 score: 27.7 coord: 734..765 e-value: 1.1E-6 score: 26.4 coord: 629..662 e-value: 3.1E-5 score: 21.9 coord: 490..523 e-value: 3.8E-10 score: 37.3 coord: 247..277 e-value: 3.9E-5 score: 21.6 coord: 595..628 e-value: 1.6E-7 score: 29.0
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 557..591 score: 11.904
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 417..451 score: 12.551
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 242..276 score: 10.753
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 592..626 score: 11.871
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 312..346 score: 13.833
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 452..486 score: 11.17
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 347..381 score: 9.208
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 277..311 score: 14.118
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 696..730 score: 10.918
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 207..241 score: 8.539
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 137..171 score: 8.287
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 627..661 score: 12.123
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 487..521 score: 12.419
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 172..206 score: 8.385
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 766..801 score: 6.412
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 662..695 score: 7.3
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 731..765 score: 12.332
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 382..416 score: 11.301
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 522..556 score: 12.2
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 706..777 coord: 47..706
None	No IPR available	PANTHER	PTHR24015:SF931	SUBFAMILY NOT NAMED	coord: 706..777 coord: 47..706
None	No IPR available	SUPERFAMILY	SSF81901	HCP-like	coord: 389..484 coord: 556..667

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg16719	Cla006246	Watermelon (97103) v1	carwmB0874
Carg16719	Csa3G177910	Cucumber (Chinese Long) v2	carcuB0885
Carg16719	MELO3C006839	Melon (DHL92) v3.5.1	carmeB0859
Carg16719	ClCG05G007520	Watermelon (Charleston Gray)	carwcgB0847
Carg16719	CSPI03G16220	Wild cucumber (PI 183967)	carcpiB0905
Carg16719	Cucsa.251360	Cucumber (Gy14) v1	carcgyB0993
Carg16719	CmaCh16G001730	Cucurbita maxima (Rimu)	carcmaB1206
Carg16719	CmoCh16G001780	Cucurbita moschata (Rifu)	carcmoB1175
Carg16719	Lsi05G013010	Bottle gourd (USVL1VR-Ls)	carlsiB791
Carg16719	CsGy3G016310	Cucumber (Gy14) v2	carcgybB0859
Carg16719	MELO3C006839.2	Melon (DHL92) v3.6.1	carmedB0869
Carg16719	CsaV3_3G016400	Cucumber (Chinese Long) v3	carcucB0909
Carg16719	Cla97C05G089400	Watermelon (97103) v2	carwmbB0910
Carg16719	Bhi01G000923	Wax gourd	carwgoB1019

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg16719	Watermelon (97103) v1	carwmB0875
Carg16719	Silver-seed gourd	carcarB118
Carg16719	Cucurbita maxima (Rimu)	carcmaB1208
Carg16719	Cucurbita moschata (Rifu)	carcmoB1176
Carg16719	Cucurbita pepo (Zucchini)	carcpeB1214
Carg16719	Cucurbita pepo (Zucchini)	carcpeB1215