CsaV3_3G009340 (gene) Cucumber (Chinese Long) v3
The following sequences are available for this feature:
Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.GTTAAATAATAAAAATAAAAAACCGCACAGTTAAATACGAAAGATTCTTTTCAAGTGCTGTGTCGAAGGTTTTGTTACTCGCAGTCGCACCACCACCTCCTCCCCCGCGCGAACGACGTCTTTCTCCCCGCCATTTTCTTCTCTTGCCGGAACCTCGATCTCAGGTACTTTTCTCAATTCCTCTCTCTTTCTTTCACGTAGTTGAAGATATTTCTTCGATCTTTAAAAGCAGTTTATATTGGGATTCGTTTGTTGCGTAATTCTGCAATTTTGAAAATAGGGCATGAAGCTGTGGGGGTTATTTGGATTAGCTTTTGTATTCTAGACTAGGGTTATGGAATTATCTGTTATTGATGTTAATTTCACACTTGGATAGCTTGCGCGTTAGCCATTTGCTTGTAGATGGGTTATAGAAAGCTTTGGATTGGAATCTTACAAATAATTCTTGATAAATCCTAAAACATGCTCTTCATTAGTTTTTTTTTCACGGTTAAATTCTAATGATAGAGGATTTAGATAAGTTAGCTCATAAACTTAAATACTCTATTCTCACTCTCATATCCCCCTCCAACCTTTAATTCAATGATTTTACAAAGAACGAGACCAAAAGAAAAGTATGGAAGGAAATTAGAATCAATAATCTTCAGCGTAAGCTCATGCCTCCAGATAATGAGAATGGAGAAATTAGAACCAGGCCCGTAACCGTGAATCTGCTTCTGCAAGCTATTATGAAAGCCTATAACTTGAAGACAGGTATCCATACCAGTCCAATCAACGTTATTATAGCGTTTTTTTAGTTAACTTCCACCAATTCAATGCCCTTGTAGAATGACCAACAACATGCAAATCCCCACAATGCAGATTTAAACCCATAAATTATAGGTGGGGTCTATTCACTAGAACAAGAGTTTTGGCATGATTTAAAAGTGTAAATTTAACACCGAGAGGTATTTACTTGCTCGGTCTATTCTCAAATGTTAGTGTTGTTCGTGAATCGTGCTCTATTCGCTACTTTATGAAAGAAAGTTCTATATCATCTCAAGCTTATCATCTTTTGTGTTATTAAAATCAGGATTAAACCATTCAAGTTTGTTAGGCCCCAACTTATTGATATCCCTCCAAATTTCTCTCTTCGGTTCAAAGAAAGCTTTCTAGTTTCAAGTTTCCCTCAAAAGAAGAAAAAGTATAAAGAAGCAGGTTAATCAAATGACATTCTACTGTGCGATGGTTCAAGGACATAAATTTTAGTTTATGATTGCTGACTTGTAAATTGTTTCCAAGAAAAATTAGTTTAGCAATATTTTTTTGTTGTGTTTTCCTTTTTTATGGTTGTCCATCTAATTCTGTCATATTTCTCCTTGATTGAAAAGTTACTTAAAATCTTACCAAGTATTTGATGGGGGAAAACTGTTGGTCAAGTCATATAATTGTTATTCTTACTACTATTTTTTGCTTGCTAACACATTCGTGTCTCTCTATTAGATGAAAACTTCAGAGTTGATTGTTCAAGATGAAGAGGCGGCTCAGCAGACAATGAAAAATACTGAATGGCCAGATGGTTTAGATAAAAAGGACGAAAAAAAGAAGAAGAAGAAGAAGAAGAAGAAGAATAAGCAGAAGGAACATAAAACCCAAAAGGACGAGCAGAAAGAAGAGAAAGAATCTGATACAGAACCTTGGGTTAAGAACGAAGAAATAGGATTTGCTACTGGGTGGCGAGATTGTTCAGATAAAAAGGACAGAGAAAAGAAGAAGAAGCATAAAAAGAAGCAGAACGAACATAACGCTCAAAAGGACGAGCAGAAAGAAGAAATAGAATCTGATGCAGAACCTGGGGAATCTGAGACGGAAACTTATGTGAAAAAAGATGATGAAAAGCCAAAGAAGAAAAAAGCTAAGTTGTCTGAAGGCATTGATGGAAATAATCATAAAAGAGAACCAAACAGTGGTAAGGAGAAGAAGAAAAAGAAGCAAAAAACTGAGGATTCTACAGAAAGTTCTTCTCCTATTACCAAGGAGAAGAAGAGGAAGAAAACTAAGTATGTTGAAAAGGTTCAGGAAGGAGGAGCAGGATTGAGGGAGAACGAGGAAATTAGTAGTTCTCCTGAAAGACAATCGCCCAAGGGATCATCCAAGAAAGTAAGATTTTCAGAAGATGTGGAGATCTTTCCACTAGTTGATGACCAAAATAGTGGGAAAACTAAGGAAGATGACGGTTTAATTAGAGGGAAGCGGTTTTCCAAAGAAGAAGACGAGATAGTGAAAAAGGCTGTCTTCGAATACATTGAGAAACACGCTCTTGGTGATGAAGGTCTCAAAATGGTTCTTCATTGCAGGGAGTATCCAGAGATCAAAAGTTGTTGGAAGGACATAGGAAAAGCCATACCTTATAGGCCTTATTTGAGTGTATATTATAGAGCTCACATCTTGTTTGAAAGGGATGAGAAGCGTAAATGGACTCATGAGGAATATGAACTTGTTCGAAAGTTTCATGACACACATGGGTCAGATTGGAAAGGATTAGCCGATGTCCTTGGAAAACACAGGTTTCATGTGAAAGATACATGGAGGCGTATAAAACTCCCCAATATGAAGAAAGGGCAATGGACACAAGACGAGTACCAGAAATTATTTGATTTAGTTAACAAAGACCTGCGACTCAAGGCTTATGAGGAAAAAAGATCCAAGCATGGGATGCTTCGTGACAATATCTGCTGGGGAGCAATCAGCGACGTGTTGTCCACAAGATCAACTGCTCTTTGCTGCCAGAAATGGTATCGCCAGTTAACATCGCCAATGGTTGCTGAGAATGAATGGGCAGATGTAGACGACTACCGGCTTGTTGATGCTCTCTCTAGCTTGGATGCCTGCTCCATTGAAGATGTGGAATGGGACCAACTGCTTGAACACAGAGATGGTGATGTATGTAGAAAGCGGTGGTCTCAAATGGTCAAACACATAGGTGATAATGGGAACAAGTCATTTTCTGAACAAGTTGAAATCCTCTCCCAGCGATATAGCATTGATGTACTTGATGCAAGAGAAGCCTATGACAATGCGCCTGTAGTTGATTAGGCAAAGCATAGTTCAAATCTCGTCAAATTTCTTTTCATTCAGGAGGTATAGTATCAAGATGTCTAATTGCAGTAAGTTGTCTTCCTCACAGCCCAGGATTTCATGCTAGGAATATCAAGTTCTTTATGATCTTTTTCGACAAAGAAACACATATCAAGTTCTTTATGATCTTTTTCGACAAAGAAACACATAGCGTCCTTATCAGTTGTTATTGTTATGTAATGGTTATATTAGTTGCTACTTTTGTAATTTTCCAAGTACTCTACCCAGGTGAAAAAGTTTTGGGAGTTTCTTTTTCTTATGTCTTTAGTCCTTCAGTTTCTCTTATTTTTGTAGATCATCATTTTTAATGTATGGAAAAATCCTCCAAAGCAGCAAATCCCTATTAATTTTTCTTTATCTTTTCATTGTTTGGTAAGACAATCTAGAAGTTGAGACTGGAAAATCTGGAAACCAATTCATGTGGAGAAGCAATATATTGAAATTGTATAGTTGAGAGTGCATCCTTCTTACATTTGTAAGATGAAATTTGAGAGAAAAAAATGACAATAAAACAGGATCCTAGTAATTTAAACCAAGGGCCTTCTCTCTTCATCCTTTTCAATTTCTATTTGATGAGCCATTTCATTGTCTTTGCCATTGTTAGCAGGTGGTTTTGAGGTCCTGACATTTGAAGAAGCTTTGTTCTTGGGCTTGTAATCAGGTAATAACTTCAACGTAATCCCCATGCCTATGAGCAGCAGCCCCGTCGCATGTTGTTCACTTAATGGCTTCGTGAATATCAAGTAAGATAGCAATAATGTCACTGCCTTTCTAGCAGTTGTTATCTGTGACAGAATTCAATTGTTATTAGTTGTTACAACTAGGATGATCACAAATAGTACAAGGTTTAAAT ATGAAAACTTCAGAGTTGATTGTTCAAGATGAAGAGGCGGCTCAGCAGACAATGAAAAATACTGAATGGCCAGATGGTTTAGATAAAAAGGACGAAAAAAAGAAGAAGAAGAAGAAGAAGAAGAAGAATAAGCAGAAGGAACATAAAACCCAAAAGGACGAGCAGAAAGAAGAGAAAGAATCTGATACAGAACCTTGGGTTAAGAACGAAGAAATAGGATTTGCTACTGGGTGGCGAGATTGTTCAGATAAAAAGGACAGAGAAAAGAAGAAGAAGCATAAAAAGAAGCAGAACGAACATAACGCTCAAAAGGACGAGCAGAAAGAAGAAATAGAATCTGATGCAGAACCTGGGGAATCTGAGACGGAAACTTATGTGAAAAAAGATGATGAAAAGCCAAAGAAGAAAAAAGCTAAGTTGTCTGAAGGCATTGATGGAAATAATCATAAAAGAGAACCAAACAGTGGTAAGGAGAAGAAGAAAAAGAAGCAAAAAACTGAGGATTCTACAGAAAGTTCTTCTCCTATTACCAAGGAGAAGAAGAGGAAGAAAACTAAGTATGTTGAAAAGGTTCAGGAAGGAGGAGCAGGATTGAGGGAGAACGAGGAAATTAGTAGTTCTCCTGAAAGACAATCGCCCAAGGGATCATCCAAGAAAGTAAGATTTTCAGAAGATGTGGAGATCTTTCCACTAGTTGATGACCAAAATAGTGGGAAAACTAAGGAAGATGACGGTTTAATTAGAGGGAAGCGGTTTTCCAAAGAAGAAGACGAGATAGTGAAAAAGGCTGTCTTCGAATACATTGAGAAACACGCTCTTGGTGATGAAGGTCTCAAAATGGTTCTTCATTGCAGGGAGTATCCAGAGATCAAAAGTTGTTGGAAGGACATAGGAAAAGCCATACCTTATAGGCCTTATTTGAGTGTATATTATAGAGCTCACATCTTGTTTGAAAGGGATGAGAAGCGTAAATGGACTCATGAGGAATATGAACTTGTTCGAAAGTTTCATGACACACATGGGTCAGATTGGAAAGGATTAGCCGATGTCCTTGGAAAACACAGGTTTCATGTGAAAGATACATGGAGGCGTATAAAACTCCCCAATATGAAGAAAGGGCAATGGACACAAGACGAGTACCAGAAATTATTTGATTTAGTTAACAAAGACCTGCGACTCAAGGCTTATGAGGAAAAAAGATCCAAGCATGGGATGCTTCGTGACAATATCTGCTGGGGAGCAATCAGCGACGTGTTGTCCACAAGATCAACTGCTCTTTGCTGCCAGAAATGGTATCGCCAGTTAACATCGCCAATGGTTGCTGAGAATGAATGGGCAGATGTAGACGACTACCGGCTTGTTGATGCTCTCTCTAGCTTGGATGCCTGCTCCATTGAAGATGTGGAATGGGACCAACTGCTTGAACACAGAGATGGTGATGTATGTAGAAAGCGGTGGTCTCAAATGGTCAAACACATAGGTGATAATGGGAACAAGTCATTTTCTGAACAAGTTGAAATCCTCTCCCAGCGATATAGCATTGATGTACTTGATGCAAGAGAAGCCTATGACAATGCGCCTGTAGTTGATTAG ATGAAAACTTCAGAGTTGATTGTTCAAGATGAAGAGGCGGCTCAGCAGACAATGAAAAATACTGAATGGCCAGATGGTTTAGATAAAAAGGACGAAAAAAAGAAGAAGAAGAAGAAGAAGAAGAAGAATAAGCAGAAGGAACATAAAACCCAAAAGGACGAGCAGAAAGAAGAGAAAGAATCTGATACAGAACCTTGGGTTAAGAACGAAGAAATAGGATTTGCTACTGGGTGGCGAGATTGTTCAGATAAAAAGGACAGAGAAAAGAAGAAGAAGCATAAAAAGAAGCAGAACGAACATAACGCTCAAAAGGACGAGCAGAAAGAAGAAATAGAATCTGATGCAGAACCTGGGGAATCTGAGACGGAAACTTATGTGAAAAAAGATGATGAAAAGCCAAAGAAGAAAAAAGCTAAGTTGTCTGAAGGCATTGATGGAAATAATCATAAAAGAGAACCAAACAGTGGTAAGGAGAAGAAGAAAAAGAAGCAAAAAACTGAGGATTCTACAGAAAGTTCTTCTCCTATTACCAAGGAGAAGAAGAGGAAGAAAACTAAGTATGTTGAAAAGGTTCAGGAAGGAGGAGCAGGATTGAGGGAGAACGAGGAAATTAGTAGTTCTCCTGAAAGACAATCGCCCAAGGGATCATCCAAGAAAGTAAGATTTTCAGAAGATGTGGAGATCTTTCCACTAGTTGATGACCAAAATAGTGGGAAAACTAAGGAAGATGACGGTTTAATTAGAGGGAAGCGGTTTTCCAAAGAAGAAGACGAGATAGTGAAAAAGGCTGTCTTCGAATACATTGAGAAACACGCTCTTGGTGATGAAGGTCTCAAAATGGTTCTTCATTGCAGGGAGTATCCAGAGATCAAAAGTTGTTGGAAGGACATAGGAAAAGCCATACCTTATAGGCCTTATTTGAGTGTATATTATAGAGCTCACATCTTGTTTGAAAGGGATGAGAAGCGTAAATGGACTCATGAGGAATATGAACTTGTTCGAAAGTTTCATGACACACATGGGTCAGATTGGAAAGGATTAGCCGATGTCCTTGGAAAACACAGGTTTCATGTGAAAGATACATGGAGGCGTATAAAACTCCCCAATATGAAGAAAGGGCAATGGACACAAGACGAGTACCAGAAATTATTTGATTTAGTTAACAAAGACCTGCGACTCAAGGCTTATGAGGAAAAAAGATCCAAGCATGGGATGCTTCGTGACAATATCTGCTGGGGAGCAATCAGCGACGTGTTGTCCACAAGATCAACTGCTCTTTGCTGCCAGAAATGGTATCGCCAGTTAACATCGCCAATGGTTGCTGAGAATGAATGGGCAGATGTAGACGACTACCGGCTTGTTGATGCTCTCTCTAGCTTGGATGCCTGCTCCATTGAAGATGTGGAATGGGACCAACTGCTTGAACACAGAGATGGTGATGTATGTAGAAAGCGGTGGTCTCAAATGGTCAAACACATAGGTGATAATGGGAACAAGTCATTTTCTGAACAAGTTGAAATCCTCTCCCAGCGATATAGCATTGATGTACTTGATGCAAGAGAAGCCTATGACAATGCGCCTGTAGTTGATTAG MKTSELIVQDEEAAQQTMKNTEWPDGLDKKDEKKKKKKKKKKNKQKEHKTQKDEQKEEKESDTEPWVKNEEIGFATGWRDCSDKKDREKKKKHKKKQNEHNAQKDEQKEEIESDAEPGESETETYVKKDDEKPKKKKAKLSEGIDGNNHKREPNSGKEKKKKKQKTEDSTESSSPITKEKKRKKTKYVEKVQEGGAGLRENEEISSSPERQSPKGSSKKVRFSEDVEIFPLVDDQNSGKTKEDDGLIRGKRFSKEEDEIVKKAVFEYIEKHALGDEGLKMVLHCREYPEIKSCWKDIGKAIPYRPYLSVYYRAHILFERDEKRKWTHEEYELVRKFHDTHGSDWKGLADVLGKHRFHVKDTWRRIKLPNMKKGQWTQDEYQKLFDLVNKDLRLKAYEEKRSKHGMLRDNICWGAISDVLSTRSTALCCQKWYRQLTSPMVAENEWADVDDYRLVDALSSLDACSIEDVEWDQLLEHRDGDVCRKRWSQMVKHIGDNGNKSFSEQVEILSQRYSIDVLDAREAYDNAPVVD
BLAST of CsaV3_3G009340 vs. NCBI nr
Match: XP_011650774.1 (PREDICTED: cyclin-D-binding Myb-like transcription factor 1 [Cucumis sativus]) HSP 1 Score: 759.6 bits (1960), Expect = 7.1e-216 Identity = 530/530 (100.00%), Postives = 530/530 (100.00%), Query Frame = 0
BLAST of CsaV3_3G009340 vs. NCBI nr
Match: KGN56561.1 (hypothetical protein Csa_3G124810 [Cucumis sativus]) HSP 1 Score: 745.3 bits (1923), Expect = 1.4e-211 Identity = 530/556 (95.32%), Postives = 530/556 (95.32%), Query Frame = 0
BLAST of CsaV3_3G009340 vs. NCBI nr
Match: XP_008438110.1 (PREDICTED: RNA polymerase I termination factor [Cucumis melo]) HSP 1 Score: 638.6 bits (1646), Expect = 1.8e-179 Identity = 305/317 (96.21%), Postives = 310/317 (97.79%), Query Frame = 0
BLAST of CsaV3_3G009340 vs. NCBI nr
Match: XP_022147285.1 (RNA polymerase I termination factor isoform X1 [Momordica charantia]) HSP 1 Score: 622.1 bits (1603), Expect = 1.8e-174 Identity = 294/342 (85.96%), Postives = 321/342 (93.86%), Query Frame = 0
BLAST of CsaV3_3G009340 vs. NCBI nr
Match: XP_022147286.1 (cyclin-D-binding Myb-like transcription factor 1 isoform X2 [Momordica charantia] >XP_022147288.1 cyclin-D-binding Myb-like transcription factor 1 isoform X2 [Momordica charantia]) HSP 1 Score: 622.1 bits (1603), Expect = 1.8e-174 Identity = 294/342 (85.96%), Postives = 321/342 (93.86%), Query Frame = 0
BLAST of CsaV3_3G009340 vs. TAIR10
Match: AT5G41020.1 (myb family transcription factor) HSP 1 Score: 399.4 bits (1025), Expect = 3.4e-111 Identity = 187/313 (59.74%), Postives = 233/313 (74.44%), Query Frame = 0
BLAST of CsaV3_3G009340 vs. TAIR10
Match: AT4G32730.2 (Homeodomain-like protein) HSP 1 Score: 57.0 bits (136), Expect = 4.1e-08 Identity = 47/179 (26.26%), Postives = 81/179 (45.25%), Query Frame = 0
BLAST of CsaV3_3G009340 vs. TAIR10
Match: AT5G11510.1 (myb domain protein 3r-4) HSP 1 Score: 56.6 bits (135), Expect = 5.4e-08 Identity = 46/179 (25.70%), Postives = 77/179 (43.02%), Query Frame = 0
BLAST of CsaV3_3G009340 vs. TAIR10
Match: AT3G09370.2 (myb domain protein 3r-3) HSP 1 Score: 54.3 bits (129), Expect = 2.7e-07 Identity = 43/175 (24.57%), Postives = 77/175 (44.00%), Query Frame = 0
BLAST of CsaV3_3G009340 vs. TAIR10
Match: AT5G02320.1 (myb domain protein 3r-5) HSP 1 Score: 50.8 bits (120), Expect = 2.9e-06 Identity = 41/175 (23.43%), Postives = 76/175 (43.43%), Query Frame = 0
BLAST of CsaV3_3G009340 vs. Swiss-Prot
Match: sp|P48972|MYBB_MOUSE (Myb-related protein B OS=Mus musculus OX=10090 GN=Mybl2 PE=1 SV=1) HSP 1 Score: 63.9 bits (154), Expect = 6.1e-09 Identity = 59/220 (26.82%), Postives = 94/220 (42.73%), Query Frame = 0
BLAST of CsaV3_3G009340 vs. Swiss-Prot
Match: sp|Q05935|MYBA_XENLA (Myb-related protein A OS=Xenopus laevis OX=8355 GN=mybl1 PE=2 SV=1) HSP 1 Score: 63.2 bits (152), Expect = 1.0e-08 Identity = 42/171 (24.56%), Postives = 77/171 (45.03%), Query Frame = 0
BLAST of CsaV3_3G009340 vs. Swiss-Prot
Match: sp|Q08759|MYB_XENLA (Transcriptional activator Myb OS=Xenopus laevis OX=8355 GN=myb PE=2 SV=1) HSP 1 Score: 63.2 bits (152), Expect = 1.0e-08 Identity = 44/172 (25.58%), Postives = 81/172 (47.09%), Query Frame = 0
BLAST of CsaV3_3G009340 vs. Swiss-Prot
Match: sp|P46200|MYB_BOVIN (Transcriptional activator Myb OS=Bos taurus OX=9913 GN=MYB PE=2 SV=1) HSP 1 Score: 62.8 bits (151), Expect = 1.3e-08 Identity = 45/172 (26.16%), Postives = 79/172 (45.93%), Query Frame = 0
BLAST of CsaV3_3G009340 vs. Swiss-Prot
Match: sp|P10242|MYB_HUMAN (Transcriptional activator Myb OS=Homo sapiens OX=9606 GN=MYB PE=1 SV=2) HSP 1 Score: 62.8 bits (151), Expect = 1.3e-08 Identity = 45/172 (26.16%), Postives = 79/172 (45.93%), Query Frame = 0
BLAST of CsaV3_3G009340 vs. TrEMBL
Match: tr|A0A0A0L901|A0A0A0L901_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G124810 PE=4 SV=1) HSP 1 Score: 745.3 bits (1923), Expect = 9.1e-212 Identity = 530/556 (95.32%), Postives = 530/556 (95.32%), Query Frame = 0
BLAST of CsaV3_3G009340 vs. TrEMBL
Match: tr|A0A1S3AVK4|A0A1S3AVK4_CUCME (RNA polymerase I termination factor OS=Cucumis melo OX=3656 GN=LOC103483314 PE=4 SV=1) HSP 1 Score: 638.6 bits (1646), Expect = 1.2e-179 Identity = 305/317 (96.21%), Postives = 310/317 (97.79%), Query Frame = 0
BLAST of CsaV3_3G009340 vs. TrEMBL
Match: tr|A0A2H5Q534|A0A2H5Q534_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_196870 PE=4 SV=1) HSP 1 Score: 487.6 bits (1254), Expect = 3.4e-134 Identity = 225/332 (67.77%), Postives = 272/332 (81.93%), Query Frame = 0
BLAST of CsaV3_3G009340 vs. TrEMBL
Match: tr|A0A2H5Q527|A0A2H5Q527_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_196860 PE=4 SV=1) HSP 1 Score: 487.6 bits (1254), Expect = 3.4e-134 Identity = 225/332 (67.77%), Postives = 272/332 (81.93%), Query Frame = 0
BLAST of CsaV3_3G009340 vs. TrEMBL
Match: tr|A0A2I4HKZ8|A0A2I4HKZ8_9ROSI (DNA-binding protein REB1 OS=Juglans regia OX=51240 GN=LOC109019067 PE=4 SV=1) HSP 1 Score: 486.1 bits (1250), Expect = 1.0e-133 Identity = 226/328 (68.90%), Postives = 270/328 (82.32%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |