CsaV3_3G007300 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_3G007300
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr3 : 6507564 .. 6507803 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCTGTACAAAAACGCAAAATTCAGATAAATTTCTTACACAAAAGAAGGTTGTAGTTGTAACTAACACATTTCTATTGGAAAACAATGGAGATCTGTATTTCCACTGGGAGTGGCTTCAGACCGAAACTCCATTGCCATTGGAATCAGAACTGGCGACGATTGGATTGAAATCGCGAAAGGATGCTCCTCAAGTCCCCAAGGCAGCTGAGCATCCGCCACGAGTTCAGCTGACATGA

mRNA sequence

ATGGTCTGTACAAAAACGCAAAATTCAGATAAATTTCTTACACAAAAGAAGGTTGTAGTTGTAACTAACACATTTCTATTGGAAAACAATGGAGATCTGTATTTCCACTGGGAGTGGCTTCAGACCGAAACTCCATTGCCATTGGAATCAGAACTGGCGACGATTGGATTGAAATCGCGAAAGGATGCTCCTCAAGTCCCCAAGGCAGCTGAGCATCCGCCACGAGTTCAGCTGACATGA

Coding sequence (CDS)

ATGGTCTGTACAAAAACGCAAAATTCAGATAAATTTCTTACACAAAAGAAGGTTGTAGTTGTAACTAACACATTTCTATTGGAAAACAATGGAGATCTGTATTTCCACTGGGAGTGGCTTCAGACCGAAACTCCATTGCCATTGGAATCAGAACTGGCGACGATTGGATTGAAATCGCGAAAGGATGCTCCTCAAGTCCCCAAGGCAGCTGAGCATCCGCCACGAGTTCAGCTGACATGA

Protein sequence

MVCTKTQNSDKFLTQKKVVVVTNTFLLENNGDLYFHWEWLQTETPLPLESELATIGLKSRKDAPQVPKAAEHPPRVQLT

Homology

[Close]

BLAST of CsaV3_3G007300 vs. NCBI nr
Match: KGN56346.1 (hypothetical protein Csa_3G116830 [Cucumis sativus])

HSP 1 Score: 165.2 bits (417), Expect = 8.9e-38
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1  MVCTKTQNSDKFLTQKKVVVVTNTFLLENNGDLYFHWEWLQTETPLPLESELATIGLKSR 60
          MVCTKTQNSDKFLTQKKVVVVTNTFLLENNGDLYFHWEWLQTETPLPLESELATIGLKSR
Sbjct: 1  MVCTKTQNSDKFLTQKKVVVVTNTFLLENNGDLYFHWEWLQTETPLPLESELATIGLKSR 60

Query: 61 KDAPQVPKAAEHPPRVQLT 80
          KDAPQVPKAAEHPPRVQLT
Sbjct: 61 KDAPQVPKAAEHPPRVQLT 79

[Close]

BLAST of CsaV3_3G007300 vs. TrEMBL
Match: tr|A0A0A0L8A3|A0A0A0L8A3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G116830 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 5.9e-38
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1  MVCTKTQNSDKFLTQKKVVVVTNTFLLENNGDLYFHWEWLQTETPLPLESELATIGLKSR 60
          MVCTKTQNSDKFLTQKKVVVVTNTFLLENNGDLYFHWEWLQTETPLPLESELATIGLKSR
Sbjct: 1  MVCTKTQNSDKFLTQKKVVVVTNTFLLENNGDLYFHWEWLQTETPLPLESELATIGLKSR 60

Query: 61 KDAPQVPKAAEHPPRVQLT 80
          KDAPQVPKAAEHPPRVQLT
Sbjct: 61 KDAPQVPKAAEHPPRVQLT 79

The following BLAST results are available for this feature:

BLAST of CsaV3_3G007300 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN56346.1	8.9e-38	100.00	hypothetical protein Csa_3G116830 [Cucumis sativus]	[more]

BLAST of CsaV3_3G007300 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G007300 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G007300 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L8A3\|A0A0A0L8A3_CUCSA	5.9e-38	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G116830 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G007300.1	CsaV3_3G007300.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 59..79

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_3G007300	CsGy3G007310	Cucumber (Gy14) v2	cgybcucB117

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_3G007300	Silver-seed gourd	carcucB0114
CsaV3_3G007300	Silver-seed gourd	carcucB0153
CsaV3_3G007300	Cucumber (Gy14) v1	cgycucB387
CsaV3_3G007300	Cucurbita maxima (Rimu)	cmacucB0010
CsaV3_3G007300	Cucurbita maxima (Rimu)	cmacucB0291
CsaV3_3G007300	Cucurbita maxima (Rimu)	cmacucB0965
CsaV3_3G007300	Cucurbita moschata (Rifu)	cmocucB0283
CsaV3_3G007300	Cucurbita moschata (Rifu)	cmocucB0953
CsaV3_3G007300	Cucurbita pepo (Zucchini)	cpecucB0759
CsaV3_3G007300	Cucurbita pepo (Zucchini)	cpecucB1058
CsaV3_3G007300	Wild cucumber (PI 183967)	cpicucB144
CsaV3_3G007300	Bottle gourd (USVL1VR-Ls)	cuclsiB228
CsaV3_3G007300	Melon (DHL92) v3.5.1	cucmeB236
CsaV3_3G007300	Melon (DHL92) v3.6.1	cucmedB230
CsaV3_3G007300	Watermelon (Charleston Gray)	cucwcgB225
CsaV3_3G007300	Watermelon (97103) v1	cucwmB239
CsaV3_3G007300	Watermelon (97103) v2	cucwmbB206
CsaV3_3G007300	Wax gourd	cucwgoB288