CsaV3_3G006220 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_3G006220
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	RNA-binding protein 25
Location	chr3 : 5420542 .. 5424405 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAGTTCAAATTGTCGAAAAAATTTAATAAATATTATGAGTAAAAATAATTGAGAATTTAAGAAATTTGGAAAATATCTTGGCTAGTTTAGGTGATGAATTCTCTAAATTTCTCAACAAAGAACAACAAAGTCTGTGAGTAATGTATAGAGTATACACAATGCAGCTTTGGGCTTCCTCTGGAGCCGAAGAGAGACGGCCCATCGTTCGGATGATCCGTTGCCTATTCCTAAAACAGAATCATGCGTCTCGCGGCTTTTGAGTTCGATTCTCATTTCCCATCTTTCTTTCTTCTTTGTTCGAACCTCGCTTCAAAATCATTCTCTAACCCCCAACTAAAATGGCGAGAGATCGTAATGGCGAGCTATCTACTAAGAGAGGAAGTTCCGACAACGACGAACCCGGCGAACAAGTAGGAGAAGACAACAGTGCTCCTTCAAAGAGAATCTCCGGTAAGGATTCCGAGAAAGATCGTGAAAATTCCGGTCCTGATGCAGACGAAGGACGAAAACGCACCAAATCAAGAAGAAAATCGCGGGAAACTCCGGATTCCGATGAGAAGCATGGCAAGAGACGTGGGAGGAGTTCGAGAAGAAAGGGGAAATCCCGTAGACGATACAGTACTAGTGAGGAGGATTCTGATTCTGAAAATACTGAATCTGATAGCTCGATGTATGATTCGGATTCGGGGCATTCGGACTCTGAATCAGCTTCAAGTAGTTCGGGTTCGGAAGAGGATAGCGAGAGCGAGGGGGAGAGGAGGAAGAGGAAGAGGAAGGAAAGGAGGAGGAGAAGAGAGAAAGAGAGAGAGCGGAAGAGGAGGAGAAAAGAGAAGGAGAAGAAGAGGATGAAAAAAGAGAAAGAGGAAGAGAAACGAAGGAAGGAGAAGAAAAAGAAGGAGAAGAAGGAACGAGGAAAGAAAGGGGCAGTGACCAATTCTTGGGGAAAGTTCGGGATTATCAAAGAAACTGATATGTGGTATGTCACTATTGAATTCCATGGATGTTTCTGTTTGCTTACTGCACAAATTTTGGTTTATATCTTCCTTTTTGCTTAACTTCTTGGCTTTGATGAATCTCTGTGCATGTAATGTAATCAACTGAACCTGATTTTTGTTATACCGTGTAAGAGTTTCTATACTGCTTCTTGGTTTCTTGAATTTGATCTTACCAACTTTTTTTCAGGAACAAGCGACCAGAGTTCACTGCATGGTTGGCTGAAATAAAAAAGGTAAACTGATTTATGCCCAATTATATTTCCATTAGCTCAATAATGCTAATTTATGACATTTGTAAGCTGTGCCATTGTCTTGCTGTTCTGTTGCAACTACAAAGTGTGGAATAGTTTTATGCAATACTTGAATGTCCTTCATTTCTAACGCACTTCATGCTTTCATTACGATGGAGCCAACCCTAGTGTTTCATCTCTTCAGTGTATGGATTTGAGTTCACTAGAACCAAGTTAATTTTTCATGGTACTTCAACGTCTAGGAATGGAAGAAGACTTCCAATACTCAATCCAGTTAACCCATTTTTGCTGTTTTGGGGACTTAAATTACTTTAAGTAGTATGCCTATGTTTTGGATTGAATATAAAAGTTTACTAAGGTGGCAAGGTGGGAAGATTTAGGATCCGACTGCTTACATAGTTGTATTTATGCTAATCATATTATTTTGATGTTACATTGCTCTTAGGTTAACTTGGAAAGCCTAGCTAACTGGGAAGAGAAGCAAATGTTTAAAGAGTAAGCTCCTCACAGTCATTACTGCTGAATTTTGAAGATAGTTGTTGTATTAACTATTCTAATTCTCACTTAATCTATTTGTGAAAACTTATTGAAACTGTAAATAACTGCAATCATACTTATCTTGTGATGATTGTTTATACAGATTCATGGAGGACCATAACACGGCCACTTTTCCGTCCAAAAAGTAAGGTTCTGAGTATCTTTGTATCTGCGGCTACTATCTTCTTGTTTGAGAATGTTGAAAGAAAGAAATGAATGTAGATTGCTCGATGGAACATTGCTATGGTCAATATTTCTTGTAGTTGCATTTGATACAGTATTTTAAACCCAAGAAAGAATTAACTGAAGCTTTTCTTTGAAGATCAACATCTACTCATGTTGTTAAGTATGCTTTCGCTTATTAGACTCCTATTCATTTTGTTTCTTCCAATGTCAATCACTTCCATTTATTTCATGTGATTTCAGGTACTACAATCTTGATGCTTATTACCAGCGTAAAATACAAAAAGATATGAAGAAAGGCCAAAAAAAGGTTGTGGCAGGGGAACGCACTGTGTTTGATGATGAAGAACAGAGGAGGTACTTTCTACTTTTCTTCCTTTTTCTTTACCTGCTGTTCACTTGGAGGATTAAATACACCTCAATCTTTTGAATTTTTGCTCATCCAGTGGTTGAATGTCAATGTTTTATGGTGGAGTCTTAAATTACCGATTCAACCCAAAAGCTTAAGCTAGTAGCCGAGGGTAAATTTAATATATTATCTAATATGGTGCAATACCACTCATTAAAAATTCACAAAGAAAGTCTTTGTTCAATTTTTCATAAGCATATCAAATCATTCCGATACAAGGTCTGAAAAATCAATTAATAACTAACTGATAGACTAATTAAAAATAAACTCAGGAAACAATTACTAAAACTAATTAACCAATTGAAGTGCTACATTTGAACTGCTGTCTTTTTCCTGGACTTAAAATGCGGTCAAAACTATTATTGAATGTTAAAAAATCATAGACGGTCAAGTTGTTCAACAGTCTTGATTTGGTTAATATTGACACTCTACTTTTCAGGCAAGAACTACTCATTGAACGTGAAAAGCACAAGGAAGAACAAGTGGAAGTCCTAAAGCGCTCTATGCAGACAGGAATGGTCGGTGATTTTACTCTCTGAAAGTAGTTTATATTATCCAACTTTATTGCAAGTTTCTTACTTCCATTTCTCACAGGCACAAGCAATGAAAGAACAAGCTCGACTCAGGGAGGAGATGGCTTATCAATACAAGCTTGGAAACTTTGAGGTAGGCATAAATGTGAACAAAGGTTTCCTGCGGTTTCATTTGGATGTACATTCTCAGGCTGTTCCCAAATTTTTGCTACATTTTATTATAGGCTGCAGCTGCCATTCAACGAAGATTGGACCCAGATGTTGCCCTGTGAGAGAACTGAAAGAAGAGGCTTTAGTTTGCTCGATTATTTCGTGTTTGGTACTACATGGTTCCACTATCGAGAACTCCTGAAGTTGCCGCATGTTGTGTTTGAATTTCCAAACAAAGGGAAGCTCTCCACAATTCTGCCAACCTTTGTAGTTTTGTAGCATCCCCATCCCAGTTCCCATGGCAGTACAGGAATGGTTTTGACTTGCTTTTGCCTTTGGAATAGTAAAGGTAATTTTGCATAAAGTCTGTCATGTTATGTATGGTGTAATAGTCGTTCTCTTTTATAGTTAGTTCTCTTTTATAGTTAGCAGTCGAAATGTGGGTCGTGAATTTGAGCCTATGTTGTGCCCACTGTCCTCGGAAATGGACAGAGAAGAATTGCATTTCTAGTAATATTTTTTTCTGTCGAGGGTTGAATAATGGATGGATTGTTAGGGTTCTCTTTAACAAGAACATAAAGAATTTTCCTTCAAAGTTACTTCTAGGAGCACTTGAATTGAGTTGACCTTTTTTTCACCCAAACTCAGTTTTTGTTTTAAGAATTTGTTTGATGAATGATTGATTATAAAAGTTACCCTAAAAACCTCCCATAGAAAATATTGAATTGTTGTTTTGTCAGCTTTGTTTGTTTTGAGAATCTCCCTATTTTTTGGGAGTTGAGGTTAGAATAAGATTTTATGATT

mRNA sequence

ATGGCGAGAGATCGTAATGGCGAGCTATCTACTAAGAGAGGAAGTTCCGACAACGACGAACCCGGCGAACAAGTAGGAGAAGACAACAGTGCTCCTTCAAAGAGAATCTCCGGTAAGGATTCCGAGAAAGATCGTGAAAATTCCGGTCCTGATGCAGACGAAGGACGAAAACGCACCAAATCAAGAAGAAAATCGCGGGAAACTCCGGATTCCGATGAGAAGCATGGCAAGAGACGTGGGAGGAGTTCGAGAAGAAAGGGGAAATCCCGTAGACGATACAGTACTAGTGAGGAGGATTCTGATTCTGAAAATACTGAATCTGATAGCTCGATGTATGATTCGGATTCGGGGCATTCGGACTCTGAATCAGCTTCAAGTAGTTCGGGTTCGGAAGAGGATAGCGAGAGCGAGGGGGAGAGGAGGAAGAGGAAGAGGAAGGAAAGGAGGAGGAGAAGAGAGAAAGAGAGAGAGCGGAAGAGGAGGAGAAAAGAGAAGGAGAAGAAGAGGATGAAAAAAGAGAAAGAGGAAGAGAAACGAAGGAAGGAGAAGAAAAAGAAGGAGAAGAAGGAACGAGGAAAGAAAGGGGCAGTGACCAATTCTTGGGGAAAGTTCGGGATTATCAAAGAAACTGATATGTGGAACAAGCGACCAGAGTTCACTGCATGGTTGGCTGAAATAAAAAAGGTTAACTTGGAAAGCCTAGCTAACTGGGAAGAGAAGCAAATGTTTAAAGAATTCATGGAGGACCATAACACGGCCACTTTTCCGTCCAAAAAGTACTACAATCTTGATGCTTATTACCAGCGTAAAATACAAAAAGATATGAAGAAAGGCCAAAAAAAGGTTGTGGCAGGGGAACGCACTGTGTTTGATGATGAAGAACAGAGGAGGCAAGAACTACTCATTGAACGTGAAAAGCACAAGGAAGAACAAGTGGAAGTCCTAAAGCGCTCTATGCAGACAGGAATGGCACAAGCAATGAAAGAACAAGCTCGACTCAGGGAGGAGATGGCTTATCAATACAAGCTTGGAAACTTTGAGGCTGCAGCTGCCATTCAACGAAGATTGGACCCAGATGTTGCCCTGTGA

Coding sequence (CDS)

ATGGCGAGAGATCGTAATGGCGAGCTATCTACTAAGAGAGGAAGTTCCGACAACGACGAACCCGGCGAACAAGTAGGAGAAGACAACAGTGCTCCTTCAAAGAGAATCTCCGGTAAGGATTCCGAGAAAGATCGTGAAAATTCCGGTCCTGATGCAGACGAAGGACGAAAACGCACCAAATCAAGAAGAAAATCGCGGGAAACTCCGGATTCCGATGAGAAGCATGGCAAGAGACGTGGGAGGAGTTCGAGAAGAAAGGGGAAATCCCGTAGACGATACAGTACTAGTGAGGAGGATTCTGATTCTGAAAATACTGAATCTGATAGCTCGATGTATGATTCGGATTCGGGGCATTCGGACTCTGAATCAGCTTCAAGTAGTTCGGGTTCGGAAGAGGATAGCGAGAGCGAGGGGGAGAGGAGGAAGAGGAAGAGGAAGGAAAGGAGGAGGAGAAGAGAGAAAGAGAGAGAGCGGAAGAGGAGGAGAAAAGAGAAGGAGAAGAAGAGGATGAAAAAAGAGAAAGAGGAAGAGAAACGAAGGAAGGAGAAGAAAAAGAAGGAGAAGAAGGAACGAGGAAAGAAAGGGGCAGTGACCAATTCTTGGGGAAAGTTCGGGATTATCAAAGAAACTGATATGTGGAACAAGCGACCAGAGTTCACTGCATGGTTGGCTGAAATAAAAAAGGTTAACTTGGAAAGCCTAGCTAACTGGGAAGAGAAGCAAATGTTTAAAGAATTCATGGAGGACCATAACACGGCCACTTTTCCGTCCAAAAAGTACTACAATCTTGATGCTTATTACCAGCGTAAAATACAAAAAGATATGAAGAAAGGCCAAAAAAAGGTTGTGGCAGGGGAACGCACTGTGTTTGATGATGAAGAACAGAGGAGGCAAGAACTACTCATTGAACGTGAAAAGCACAAGGAAGAACAAGTGGAAGTCCTAAAGCGCTCTATGCAGACAGGAATGGCACAAGCAATGAAAGAACAAGCTCGACTCAGGGAGGAGATGGCTTATCAATACAAGCTTGGAAACTTTGAGGCTGCAGCTGCCATTCAACGAAGATTGGACCCAGATGTTGCCCTGTGA

Protein sequence

MARDRNGELSTKRGSSDNDEPGEQVGEDNSAPSKRISGKDSEKDRENSGPDADEGRKRTKSRRKSRETPDSDEKHGKRRGRSSRRKGKSRRRYSTSEEDSDSENTESDSSMYDSDSGHSDSESASSSSGSEEDSESEGERRKRKRKERRRRREKERERKRRRKEKEKKRMKKEKEEEKRRKEKKKKEKKERGKKGAVTNSWGKFGIIKETDMWNKRPEFTAWLAEIKKVNLESLANWEEKQMFKEFMEDHNTATFPSKKYYNLDAYYQRKIQKDMKKGQKKVVAGERTVFDDEEQRRQELLIEREKHKEEQVEVLKRSMQTGMAQAMKEQARLREEMAYQYKLGNFEAAAAIQRRLDPDVAL

Homology

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BLAST of CsaV3_3G006220 vs. NCBI nr
Match: XP_004133704.1 (PREDICTED: nucleolar protein 58 [Cucumis sativus])

HSP 1 Score: 297.0 bits (759), Expect = 8.9e-77
Identity = 170/170 (100.00%), Postives = 170/170 (100.00%), Query Frame = 0


Query: 193 KKGAVTNSWGKFGIIKETDMWNKRPEFTAWLAEIKKVNLESLANWEEKQMFKEFMEDHNT 252
           KKGAVTNSWGKFGIIKETDMWNKRPEFTAWLAEIKKVNLESLANWEEKQMFKEFMEDHNT
Sbjct: 193 KKGAVTNSWGKFGIIKETDMWNKRPEFTAWLAEIKKVNLESLANWEEKQMFKEFMEDHNT 252

Query: 253 ATFPSKKYYNLDAYYQRKIQKDMKKGQKKVVAGEXXXXXXXXXXXXXXXXXXEKHKEEQV 312
           ATFPSKKYYNLDAYYQRKIQKDMKKGQKKVVAGEXXXXXXXXXXXXXXXXXXEKHKEEQV
Sbjct: 253 ATFPSKKYYNLDAYYQRKIQKDMKKGQKKVVAGEXXXXXXXXXXXXXXXXXXEKHKEEQV 312

Query: 313 EVLKRSMQTGMAQAMKEQARLREEMAYQYKLGNFEAAAAIQRRLDPDVAL 363
           EVLKRSMQTGMAQAMKEQARLREEMAYQYKLGNFEAAAAIQRRLDPDVAL
Sbjct: 313 EVLKRSMQTGMAQAMKEQARLREEMAYQYKLGNFEAAAAIQRRLDPDVAL 362

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BLAST of CsaV3_3G006220 vs. NCBI nr
Match: XP_008452265.2 (PREDICTED: LOW QUALITY PROTEIN: vicilin-like seed storage protein At2g18540 [Cucumis melo])

HSP 1 Score: 290.4 bits (742), Expect = 8.3e-75
Identity = 160/169 (94.67%), Postives = 161/169 (95.27%), Query Frame = 0


Query: 194 KGAVTNSWGKFGIIKETDMWNKRPEFTAWLAEIKKVNLESLANWEEKQMFKEFMEDHNTA 253
           KGAVTNSWGK+GIIKETDMWNKRPEFTAWLAEIKKVNLESLANWEEKQMFKEFMEDHNTA
Sbjct: 193 KGAVTNSWGKYGIIKETDMWNKRPEFTAWLAEIKKVNLESLANWEEKQMFKEFMEDHNTA 252

Query: 254 TFPSKKYYNLDAYYQRKIQKDMKKGQKKVVAGEXXXXXXXXXXXXXXXXXXEKHKEEQVE 313
           TFPSKKYYNLDAYYQRKIQKDMKKG KKVVAGE    XXXXXXXXXXXX  EKHKEEQVE
Sbjct: 253 TFPSKKYYNLDAYYQRKIQKDMKKGHKKVVAGERTVFXXXXXXXXXXXXEREKHKEEQVE 312

Query: 314 VLKRSMQTGMAQAMKEQARLREEMAYQYKLGNFEAAAAIQRRLDPDVAL 363
            LKRSMQTGMAQAMKEQARLREEMAYQYKLGNFEAAAAIQRRLDPDVAL
Sbjct: 313 ALKRSMQTGMAQAMKEQARLREEMAYQYKLGNFEAAAAIQRRLDPDVAL 361

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BLAST of CsaV3_3G006220 vs. NCBI nr
Match: XP_023002503.1 (troponin I [Cucurbita maxima])

HSP 1 Score: 285.0 bits (728), Expect = 3.5e-73
Identity = 149/170 (87.65%), Postives = 153/170 (90.00%), Query Frame = 0


Query: 193 KKGAVTNSWGKFGIIKETDMWNKRPEFTAWLAEIKKVNLESLANWEEKQMFKEFMEDHNT 252
           KKGAVTNSWGK+GIIKETDMWNKRPEFTAWLAEIKKVNLESLANWEEKQMFKEFMEDHNT
Sbjct: 188 KKGAVTNSWGKYGIIKETDMWNKRPEFTAWLAEIKKVNLESLANWEEKQMFKEFMEDHNT 247

Query: 253 ATFPSKKYYNLDAYYQRKIQKDMKKGQKKVVAGEXXXXXXXXXXXXXXXXXXEKHKEEQV 312
           ATFPSKKYYNLDAYYQ K+ KDMKKG KK++AGE       XXXXX      EKHKEEQV
Sbjct: 248 ATFPSKKYYNLDAYYQHKMLKDMKKGHKKILAGERTVFDDEXXXXXELLVEREKHKEEQV 307

Query: 313 EVLKRSMQTGMAQAMKEQARLREEMAYQYKLGNFEAAAAIQRRLDPDVAL 363
           E LKRSMQTGMAQAMKEQARLREEMAYQYKLGNFEAAAAIQRRLDPDVAL
Sbjct: 308 EALKRSMQTGMAQAMKEQARLREEMAYQYKLGNFEAAAAIQRRLDPDVAL 357

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BLAST of CsaV3_3G006220 vs. NCBI nr
Match: XP_023515919.1 (vicilin-like seed storage protein At2g18540 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 285.0 bits (728), Expect = 3.5e-73
Identity = 149/170 (87.65%), Postives = 153/170 (90.00%), Query Frame = 0


Query: 193 KKGAVTNSWGKFGIIKETDMWNKRPEFTAWLAEIKKVNLESLANWEEKQMFKEFMEDHNT 252
           KKGAVTNSWGK+GIIKETDMWNKRPEFTAWLAEIKKVNLESLANWEEKQMFKEFMEDHNT
Sbjct: 188 KKGAVTNSWGKYGIIKETDMWNKRPEFTAWLAEIKKVNLESLANWEEKQMFKEFMEDHNT 247

Query: 253 ATFPSKKYYNLDAYYQRKIQKDMKKGQKKVVAGEXXXXXXXXXXXXXXXXXXEKHKEEQV 312
           ATFPSKKYYNLDAYYQ K+ KDMKKG KK++AGE       XXXXX      EKHKEEQV
Sbjct: 248 ATFPSKKYYNLDAYYQHKMLKDMKKGHKKILAGERTVFDDEXXXXXELLVEREKHKEEQV 307

Query: 313 EVLKRSMQTGMAQAMKEQARLREEMAYQYKLGNFEAAAAIQRRLDPDVAL 363
           E LKRSMQTGMAQAMKEQARLREEMAYQYKLGNFEAAAAIQRRLDPDVAL
Sbjct: 308 EALKRSMQTGMAQAMKEQARLREEMAYQYKLGNFEAAAAIQRRLDPDVAL 357

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BLAST of CsaV3_3G006220 vs. NCBI nr
Match: XP_022943075.1 (stress response protein NST1 [Cucurbita moschata])

HSP 1 Score: 283.1 bits (723), Expect = 1.3e-72
Identity = 148/169 (87.57%), Postives = 152/169 (89.94%), Query Frame = 0


Query: 194 KGAVTNSWGKFGIIKETDMWNKRPEFTAWLAEIKKVNLESLANWEEKQMFKEFMEDHNTA 253
           KGAVTNSWGK+GIIKETDMWNKRPEFTAWLAEIKKVNLESLANWEEKQMFKEFMEDHNTA
Sbjct: 186 KGAVTNSWGKYGIIKETDMWNKRPEFTAWLAEIKKVNLESLANWEEKQMFKEFMEDHNTA 245

Query: 254 TFPSKKYYNLDAYYQRKIQKDMKKGQKKVVAGEXXXXXXXXXXXXXXXXXXEKHKEEQVE 313
           TFPSKKYYNLDAYYQ K+ KDMKKG KK++AGE       XXXXX      EKHKEEQVE
Sbjct: 246 TFPSKKYYNLDAYYQHKMLKDMKKGHKKILAGERTVFDDEXXXXXELLVEREKHKEEQVE 305

Query: 314 VLKRSMQTGMAQAMKEQARLREEMAYQYKLGNFEAAAAIQRRLDPDVAL 363
            LKRSMQTGMAQAMKEQARLREEMAYQYKLGNFEAAAAIQRRLDPDVAL
Sbjct: 306 ALKRSMQTGMAQAMKEQARLREEMAYQYKLGNFEAAAAIQRRLDPDVAL 354

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BLAST of CsaV3_3G006220 vs. TAIR10
Match: AT5G53800.1 (unknown protein)

HSP 1 Score: 224.2 bits (570), Expect = 1.3e-58
Identity = 111/169 (65.68%), Postives = 129/169 (76.33%), Query Frame = 0


Query: 194 KGAVTNSWGKFGIIKETDMWNKRPEFTAWLAEIKKVNLESLANWEEKQMFKEFMEDHNTA 253
           KGAVT SWGK+GII+ETDMWNKRPEFTAWL E+KKVNLESL  WEEK+MFK+FMEDHNT 
Sbjct: 183 KGAVTESWGKYGIIRETDMWNKRPEFTAWLLEVKKVNLESLPPWEEKKMFKDFMEDHNTG 242

Query: 254 TFPSKKYYNLDAYYQRKIQKDMKKGQKKVVAGEXXXXXXXXXXXXXXXXXXEKHKEEQVE 313
           TF SKKYY++D YY+ K++K+MKKG KK    E                  E+ KEE+V 
Sbjct: 243 TFTSKKYYDIDGYYRLKLEKEMKKGLKKAGISERTVFNDEEQRRLEMQELRERQKEEEVL 302

Query: 314 VLKRSMQTGMAQAMKEQARLREEMAYQYKLGNFEAAAAIQRRLDPDVAL 363
            LKRSM+ GMAQAMKEQARL+EEM Y YK+G+ E AAAIQRRLDPDV +
Sbjct: 303 ALKRSMEGGMAQAMKEQARLKEEMVYLYKIGDMEGAAAIQRRLDPDVPM 351

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BLAST of CsaV3_3G006220 vs. TrEMBL
Match: tr|A0A1S3BU92|A0A1S3BU92_CUCME (LOW QUALITY PROTEIN: vicilin-like seed storage protein At2g18540 OS=Cucumis melo OX=3656 GN=LOC103493338 PE=4 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 5.5e-75
Identity = 160/169 (94.67%), Postives = 161/169 (95.27%), Query Frame = 0


Query: 194 KGAVTNSWGKFGIIKETDMWNKRPEFTAWLAEIKKVNLESLANWEEKQMFKEFMEDHNTA 253
           KGAVTNSWGK+GIIKETDMWNKRPEFTAWLAEIKKVNLESLANWEEKQMFKEFMEDHNTA
Sbjct: 193 KGAVTNSWGKYGIIKETDMWNKRPEFTAWLAEIKKVNLESLANWEEKQMFKEFMEDHNTA 252

Query: 254 TFPSKKYYNLDAYYQRKIQKDMKKGQKKVVAGEXXXXXXXXXXXXXXXXXXEKHKEEQVE 313
           TFPSKKYYNLDAYYQRKIQKDMKKG KKVVAGE    XXXXXXXXXXXX  EKHKEEQVE
Sbjct: 253 TFPSKKYYNLDAYYQRKIQKDMKKGHKKVVAGERTVFXXXXXXXXXXXXEREKHKEEQVE 312

Query: 314 VLKRSMQTGMAQAMKEQARLREEMAYQYKLGNFEAAAAIQRRLDPDVAL 363
            LKRSMQTGMAQAMKEQARLREEMAYQYKLGNFEAAAAIQRRLDPDVAL
Sbjct: 313 ALKRSMQTGMAQAMKEQARLREEMAYQYKLGNFEAAAAIQRRLDPDVAL 361

[Close]

BLAST of CsaV3_3G006220 vs. TrEMBL
Match: tr|A0A2I0A879|A0A2I0A879_9ASPA (Uncharacterized protein OS=Apostasia shenzhenica OX=1088818 GN=AXF42_Ash007988 PE=4 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 2.1e-66
Identity = 130/169 (76.92%), Postives = 143/169 (84.62%), Query Frame = 0


Query: 194 KGAVTNSWGKFGIIKETDMWNKRPEFTAWLAEIKKVNLESLANWEEKQMFKEFMEDHNTA 253
           KGAVTNSWGK+G+I+ETDMWNKRPEFTAWL+E+K VNLE+LANWEEKQMFKEFMEDHNTA
Sbjct: 177 KGAVTNSWGKYGVIRETDMWNKRPEFTAWLSEVKLVNLETLANWEEKQMFKEFMEDHNTA 236

Query: 254 TFPSKKYYNLDAYYQRKIQKDMKKGQKKVVAGEXXXXXXXXXXXXXXXXXXEKHKEEQVE 313
           TFPSKKYYNLDAY+ RK+ K+MKKG KKVV  E                  EK KEE++E
Sbjct: 237 TFPSKKYYNLDAYHHRKLDKEMKKGLKKVVEIERTSFNDEEQRRQELLIEREKQKEEKIE 296

Query: 314 VLKRSMQTGMAQAMKEQARLREEMAYQYKLGNFEAAAAIQRRLDPDVAL 363
            LKRSMQTGMAQAMKEQARLREEMAYQYKLGNFEAAAAIQ+RLDPDVA+
Sbjct: 297 ALKRSMQTGMAQAMKEQARLREEMAYQYKLGNFEAAAAIQKRLDPDVAM 345

[Close]

BLAST of CsaV3_3G006220 vs. TrEMBL
Match: tr|A0A1S3TEJ0|A0A1S3TEJ0_VIGRR (DEAD-box ATP-dependent RNA helicase 42 OS=Vigna radiata var. radiata OX=3916 GN=LOC106754632 PE=4 SV=1)

HSP 1 Score: 261.2 bits (666), Expect = 3.6e-66
Identity = 129/170 (75.88%), Postives = 144/170 (84.71%), Query Frame = 0


Query: 193 KKGAVTNSWGKFGIIKETDMWNKRPEFTAWLAEIKKVNLESLANWEEKQMFKEFMEDHNT 252
           KKGAVTNSWGK+G+I+ETDMW KRPEFTAWLAE+K+VNLE+++NWEEKQMFKEFMEDHNT
Sbjct: 173 KKGAVTNSWGKYGVIRETDMWTKRPEFTAWLAEVKQVNLENMSNWEEKQMFKEFMEDHNT 232

Query: 253 ATFPSKKYYNLDAYYQRKIQKDMKKGQKKVVAGEXXXXXXXXXXXXXXXXXXEKHKEEQV 312
           ATFPSKKYYNLDAYY+R+++K+MKKG KKV A E                  EKHKEEQV
Sbjct: 233 ATFPSKKYYNLDAYYRRQMEKEMKKGFKKVHATERTVFNDEEQRRQELLQAREKHKEEQV 292

Query: 313 EVLKRSMQTGMAQAMKEQARLREEMAYQYKLGNFEAAAAIQRRLDPDVAL 363
             LK SMQTGMAQAMKEQA+LREEMAYQYKLGNFEAAAAIQRRLDPD A+
Sbjct: 293 MALKHSMQTGMAQAMKEQAQLREEMAYQYKLGNFEAAAAIQRRLDPDAAI 342

[Close]

BLAST of CsaV3_3G006220 vs. TrEMBL
Match: tr|A0A2C9W802|A0A2C9W802_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_03G111900 PE=4 SV=1)

HSP 1 Score: 261.2 bits (666), Expect = 3.6e-66
Identity = 129/170 (75.88%), Postives = 145/170 (85.29%), Query Frame = 0


Query: 193 KKGAVTNSWGKFGIIKETDMWNKRPEFTAWLAEIKKVNLESLANWEEKQMFKEFMEDHNT 252
           K+GAVTNSWGK+GII+ETDMWNKRPEFTAWLAE+K+VNLESL NWEEKQMFKEFMEDHNT
Sbjct: 174 KRGAVTNSWGKYGIIRETDMWNKRPEFTAWLAEVKQVNLESLPNWEEKQMFKEFMEDHNT 233

Query: 253 ATFPSKKYYNLDAYYQRKIQKDMKKGQKKVVAGEXXXXXXXXXXXXXXXXXXEKHKEEQV 312
           ATFPSKKYYNLDAY++ K++K+MKKG KKV+  E                  E+HKE+QV
Sbjct: 234 ATFPSKKYYNLDAYHKHKMEKEMKKGVKKVLEKERTVFNDEEQRRLEMMQERERHKEQQV 293

Query: 313 EVLKRSMQTGMAQAMKEQARLREEMAYQYKLGNFEAAAAIQRRLDPDVAL 363
           E LK SMQ+GMAQAMKEQA+LREEMAYQYKLGNFEAAAAIQRRLDPDVA+
Sbjct: 294 EALKLSMQSGMAQAMKEQAQLREEMAYQYKLGNFEAAAAIQRRLDPDVAM 343

[Close]

BLAST of CsaV3_3G006220 vs. TrEMBL
Match: tr|V7BU10|V7BU10_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_005G071500g PE=4 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 8.0e-66
Identity = 129/170 (75.88%), Postives = 144/170 (84.71%), Query Frame = 0


Query: 193 KKGAVTNSWGKFGIIKETDMWNKRPEFTAWLAEIKKVNLESLANWEEKQMFKEFMEDHNT 252
           KKGAVTNSWGK+GII+ETDMW KRPEFTAWLAE+K+VNLE+++NWEEKQMFKEFMEDHNT
Sbjct: 213 KKGAVTNSWGKYGIIRETDMWTKRPEFTAWLAEVKQVNLENMSNWEEKQMFKEFMEDHNT 272

Query: 253 ATFPSKKYYNLDAYYQRKIQKDMKKGQKKVVAGEXXXXXXXXXXXXXXXXXXEKHKEEQV 312
           ATFPSKKYYNLDAYY+R+++K+M+KG KKV A E                  EKHKEEQV
Sbjct: 273 ATFPSKKYYNLDAYYRRQMEKEMQKGFKKVHATERTVFNDEEQRRQELLQAREKHKEEQV 332

Query: 313 EVLKRSMQTGMAQAMKEQARLREEMAYQYKLGNFEAAAAIQRRLDPDVAL 363
             LK SMQTGMAQAMKEQA+LREEMAYQYKLGNFEAAAAIQRRLDPD A+
Sbjct: 333 MALKHSMQTGMAQAMKEQAQLREEMAYQYKLGNFEAAAAIQRRLDPDAAI 382

The following BLAST results are available for this feature:

BLAST of CsaV3_3G006220 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004133704.1	8.9e-77	100.00	PREDICTED: nucleolar protein 58 [Cucumis sativus]	[more]
XP_008452265.2	8.3e-75	94.67	PREDICTED: LOW QUALITY PROTEIN: vicilin-like seed storage protein At2g18540 [Cuc...	[more]
XP_023002503.1	3.5e-73	87.65	troponin I [Cucurbita maxima]	[more]
XP_023515919.1	3.5e-73	87.65	vicilin-like seed storage protein At2g18540 [Cucurbita pepo subsp. pepo]	[more]
XP_022943075.1	1.3e-72	87.57	stress response protein NST1 [Cucurbita moschata]	[more]

BLAST of CsaV3_3G006220 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G53800.1	1.3e-58	65.68	unknown protein	[more]

BLAST of CsaV3_3G006220 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G006220 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BU92\|A0A1S3BU92_CUCME	5.5e-75	94.67	LOW QUALITY PROTEIN: vicilin-like seed storage protein At2g18540 OS=Cucumis melo...	[more]
tr\|A0A2I0A879\|A0A2I0A879_9ASPA	2.1e-66	76.92	Uncharacterized protein OS=Apostasia shenzhenica OX=1088818 GN=AXF42_Ash007988 P...	[more]
tr\|A0A1S3TEJ0\|A0A1S3TEJ0_VIGRR	3.6e-66	75.88	DEAD-box ATP-dependent RNA helicase 42 OS=Vigna radiata var. radiata OX=3916 GN=...	[more]
tr\|A0A2C9W802\|A0A2C9W802_MANES	3.6e-66	75.88	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_03G111900 PE=4 SV=...	[more]
tr\|V7BU10\|V7BU10_PHAVU	8.0e-66	75.88	Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_005G071500g PE=4 ...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0009560	embryo sac egg cell differentiation
biological_process	GO:0008284	positive regulation of cell proliferation
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0004386	helicase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G006220.1	CsaV3_3G006220.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 290..310
None	No IPR available	COILS	Coil	Coil	coord: 144..192
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 109..131
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..196
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..77
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 169..183
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 143..168
None	No IPR available	PANTHER	PTHR34689	FAMILY NOT NAMED	coord: 34..361

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_3G006220	CSPI03G06120	Wild cucumber (PI 183967)	cpicucB144
CsaV3_3G006220	Cucsa.074710	Cucumber (Gy14) v1	cgycucB074
CsaV3_3G006220	CmoCh04G009750	Cucurbita moschata (Rifu)	cmocucB0822
CsaV3_3G006220	Cp4.1LG01g08650	Cucurbita pepo (Zucchini)	cpecucB0491
CsaV3_3G006220	CsGy3G006220	Cucumber (Gy14) v2	cgybcucB117
CsaV3_3G006220	Carg00027	Silver-seed gourd	carcucB0698
CsaV3_3G006220	Cla011781	Watermelon (97103) v1	cucwmB233
CsaV3_3G006220	MELO3C016520	Melon (DHL92) v3.5.1	cucmeB248
CsaV3_3G006220	ClCG10G006870	Watermelon (Charleston Gray)	cucwcgB194
CsaV3_3G006220	Lsi05G007120	Bottle gourd (USVL1VR-Ls)	cuclsiB217
CsaV3_3G006220	MELO3C016520.2	Melon (DHL92) v3.6.1	cucmedB232
CsaV3_3G006220	Cla97C10G190740	Watermelon (97103) v2	cucwmbB182
CsaV3_3G006220	Bhi11G000613	Wax gourd	cucwgoB223

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_3G006220	Cucumber (Chinese Long) v3	cuccucB020
CsaV3_3G006220	Silver-seed gourd	carcucB0509
CsaV3_3G006220	Cucumber (Gy14) v1	cgycucB175
CsaV3_3G006220	Cucurbita maxima (Rimu)	cmacucB0382
CsaV3_3G006220	Cucurbita maxima (Rimu)	cmacucB0837
CsaV3_3G006220	Cucurbita moschata (Rifu)	cmocucB0380
CsaV3_3G006220	Cucurbita pepo (Zucchini)	cpecucB0258
CsaV3_3G006220	Wild cucumber (PI 183967)	cpicucB031
CsaV3_3G006220	Bottle gourd (USVL1VR-Ls)	cuclsiB194
CsaV3_3G006220	Watermelon (Charleston Gray)	cucwcgB222
CsaV3_3G006220	Watermelon (97103) v1	cucwmB222
CsaV3_3G006220	Watermelon (97103) v2	cucwmbB203
CsaV3_3G006220	Wax gourd	cucwgoB233
CsaV3_3G006220	Wax gourd	cucwgoB249