Cp4.1LG01g08650 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG01g08650
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Nucleic acid binding protein, putative
Location	Cp4.1LG01 : 4914794 .. 4917914 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATGTAAAGAGAAGCTTGCATCTCGCGTCTTTCGACTACCATTTTCCATTGTTCTTGTTCCAACGCCTCCTCAAATTCTCTAAACCCAAACTAAAATGGCCAGAGATCGAAATGGTGAGCTATCTAATAAGAGAGGAAGTTCCGACAACGACGAGGACAGCGGAGGAGGAGTAGGAGGAGTAGGAGGAGAAGACAACGAGGCTCCGTCGAAGAGAAATTCTGGCAGGAGTTCCGATGTGGAAGAAGGGCGAAAACGCAGCAAATCAAGAAGAAAATCGCGGGACAGTTCGGATTCCGACGAAAAACATGACAGGAAACGCGGGAAGAGTTCGGTAAGAAAGGGCAAGTCCCGCAGACGATACAGTAGTAGTGAGGAGGATTCTGATTCCGAGGATGCGGAATCTGAAAGCTCGGAGTCTGATTCGGATTCGGAGCACTCCGACGCGGAATCAGCGTCTAATAGTTCGGGTTCGGAAGGCGAGAGCGAGGAGGAGAGGAGGAGGAGGAAGAGGAAGGAAAGGAGGAGAAGAAGAGAAAAGGAGGAGAGAGAGCGGAAGAGGAGGAGAAAAGAGAAGGAGAAGAAGAGAAGGAGAAAAGAGAAGGAGGAAGAGAAACGAAGGAAGGAAAAGAAAAAGAAGGAGAAGAAGGAACGGGGAAAGAAGGGGGCTGTGACGAATTCGTGGGGAAAATACGGGATTATCAAAGAAACTGATATGTGGTATGTAAACAATGAATTCCATATATATTTCTATATTGGTTCATGGTTTTTTCTGCACAACCATTTTTTTACTCCTTGCAACTTGTTCTTACTGACTATATTTGTAGGAACAAGCGACCAGAGTTCACTGCATGGCTGGCTGAAATTAAAAAGGTAAATTGGTTTATGCTCAATATTTTCCATGAGCTCAGTAATACTTTCTTATGACATTTGTTAGCTGTAGTATTATCCTGTTATTGCCATTATCAAGGTTGTGGAATAGATGATAGCTCTATGCTATGGTTGAATTTCCTTCAATACAATGGTGCTAACCTCAGTATTTCTTCAATATATGGATCTGAATTAACTAAAACCAATTAATTTTGATGTTACTCAATCCAGATAACCCCCTTTTGCTGTTTTTGGACTCAAATTACTTTAGTAGTGTGCATATTCTTTTGATTGAACATGAGAGTCTTCCAAGTTTGGAGGAATTTATGATCTACGTAGTTGTGGTATTTTTACTAATTATATTCTTTGAATGTTCCATTGCACATAGGTGAACTTGGAAAGTCTAGCTAATTGGGAAGAGAAGCAGATGTTTAAGGAGTAAGTACATGTACTGATCGTGTTTAGTTTACTCCTCAAAATCATGACTCTTGAAGATAGCTGTTTATATTTAATTCTTGAATTGTCACTTAAATCTATATTTGAAAAAAATAATAAATTTTTTAAATAACTTTAATCTTGCTCATCTTGTGATGATTGTTTGTACAGATTCATGGAGGACCATAACACGGCCACTTTCCCATCTAAAAAGTAAGGTTCTGAGTGCTTTTTTTTGTATGTGCAGCTGATATATTATTGTTTGAGAAGGTCGTGTGAAAGAAATGGACAAAAAATGCTAGATGAAACATTACTGTGGTCAATATTTCTTGTAGGGTTGTATAATACTTTAAATTCGAGCTCTATTTTTATCTTGTGTAAGAACTGAAGTTTTTCTTTGAAGATCAACTCATCTACTCGTGTTAATCCTGCTTTCACTTATTAGATGGGTATTCATTTTGTTGCTCGAAAGGAAGCCATCCATCATTCGATCCACTTGTATTTTTATGTTATGTGATTTCAGGTACTACAATCTTGATGCCTATTACCAGCATAAAATGCTAAAAGATATGAAGAAAGGCCACAAAAAGATTTTGGCTGGGGAACGCACAGTGTTTGATGATGAAGAACAGAGGAGGTACTTTCTTCTTTTCTTCCTCTTTCCTTTTGAGGGCCTCATATTTGGAAATTTTGTTCATTTGGTGGTTGAGCATGGATGATGATGATGGAGCTTTACCACTCTTCAAGAATTCACAAGGAAATTCTTTATTCAGTTTTCCAAAGTAATTCAAGCTTAAGAAACTATCAACGAACTAACTAAAAAACCGACAATTACACCAAAAAGCTGTTTAAGAAACTAGCAAACTATTACTTAAATTAATTAACCAATTCTCTAACTCACTACATCATTTGGAGTGATGTCTTGTTCCTGGAGTTAATATGTAACTATTATTAAATTGTATCATGTGGTCTATGTTGACTTCCCCCACGGCCACACCCCTAGAAAGAAAGTAAAACAATGAAAAGAAGAATAGAAAGAAAGAGATGGTCAAGTTGTTTCGAATATTATCTGCTGGTTCAGTTAATAATTTCACTCGATTCTTCAGGCAAGAACTACTCGTGGAACGTGAAAAACACAAGGAGGAACAAGTGGAAGCCCTAAAGCGCTCGATGCAGACTGGAATGGTCAGTGATTTTAGTCTCTGGAAGTAGGTTTTGGATTATCAAATTTTATTGCAAGTTTCTAACATCCATACTTCACAGGCACAAGCAATGAAAGAACAAGCTCGACTGAGGGAGGAGATGGCTTACCAGTATAAGCTTGGAAACTTCGAGGTAGGCATAAATGTGAACAAAGTTCTCTTGTAGTTTCATTTGGATGCAATCTCAAGGCTCTTCTTGAATTTATCATAGGCTGCAGCTGCCATCCAGCGAAGATTGGACCCAGATGTTGCCCTGTAAGAGAAGAGTCTGTGTTTTGCTCGAACGTCTCGTGTTTAGTACTACATGGTTCGACACTGCAAGAACTCTGAAGTCCTTGAATGTCGTGTTTGGATTTGCAACAAAGGGAAGCTCTCCAACCCAATGATTTGGAATTACCTAAGTAAATTTGTAGCAAGCATCCCATGATAGTGCATGAGTGGTTTTAACTTGTCATAACGTTTTGTATGGTAAAAAGAAAAACATTTCCGTTGCCATAATTAATCGTAGTCATAGTTAGCAGCCAAAATGTGGATCATGAATTTGATGGTATGTCTTCCCTCAGAAATGGAAGTTTTGGCATATTTAGCAAATTTCTTTTGTGCAAAGGTCTGA

mRNA sequence

ATGTATAGAGGAAGTTCCGACAACGACGAGGACAGCGGAGGAGGAGTAGGAGGAGTAGGAGGAGAAGACAACGAGGCTCCGTCGAAGAGAAATTCTGGCAGGAGTTCCGATGTGGAAGAAGGGCGAAAACGCAGCAAATCAAGAAGAAAATCGCGGGACAGTTCGGATTCCGACGAAAAACATGACAGGAAACGCGGGAAGAGTTCGGTAAGAAAGGGCAAGTCCCGCAGACGATACAGTAGTAGTGAGGAGGATTCTGATTCCGAGGATGCGGAATCTGAAAGCTCGGAGTCTGATTCGGATTCGGAGCACTCCGACGCGGAATCAGCGTCTAATAGTTCGGGTTCGGAAGGCGAGAGCGAGGAGGAGAGGAGGAGGAGGAAGAGGAAGGAAAGGAGGAGAAGAAGAGAAAAGGAGGAGAGAGAGCGGAAGAGGAGGAGAAAAGAGAAGGAGAAGAAGAGAAGGAGAAAAGAGAAGGAGGAAGAGAAACGAAGGAAGGAAAAGAAAAAGAAGGAGAAGAAGGAACGGGGAAAGAAGGGGGCTGTGACGAATTCGTGGGGAAAATACGGGATTATCAAAGAAACTGATATGTGGAACAAGCGACCAGAGTTCACTGCATGGCTGGCTGAAATTAAAAAGGTGAACTTGGAAAGTCTAGCTAATTGGGAAGAGAAGCAGATGTTTAAGGAATTCATGGAGGACCATAACACGGCCACTTTCCCATCTAAAAAGTACTACAATCTTGATGCCTATTACCAGCATAAAATGCTAAAAGATATGAAGAAAGGCCACAAAAAGATTTTGGCTGGGGAACGCACAGTGTTTGATGATGAAGAACAGAGGAGGCAAGAACTACTCGTGGAACGTGAAAAACACAAGGAGGAACAAGTGGAAGCCCTAAAGCGCTCGATGCAGACTGGAATGGCACAAGCAATGAAAGAACAAGCTCGACTGAGGGAGGAGATGGCTTACCAGTATAAGCTTGGAAACTTCGAGGTCTGA

Coding sequence (CDS)

ATGTATAGAGGAAGTTCCGACAACGACGAGGACAGCGGAGGAGGAGTAGGAGGAGTAGGAGGAGAAGACAACGAGGCTCCGTCGAAGAGAAATTCTGGCAGGAGTTCCGATGTGGAAGAAGGGCGAAAACGCAGCAAATCAAGAAGAAAATCGCGGGACAGTTCGGATTCCGACGAAAAACATGACAGGAAACGCGGGAAGAGTTCGGTAAGAAAGGGCAAGTCCCGCAGACGATACAGTAGTAGTGAGGAGGATTCTGATTCCGAGGATGCGGAATCTGAAAGCTCGGAGTCTGATTCGGATTCGGAGCACTCCGACGCGGAATCAGCGTCTAATAGTTCGGGTTCGGAAGGCGAGAGCGAGGAGGAGAGGAGGAGGAGGAAGAGGAAGGAAAGGAGGAGAAGAAGAGAAAAGGAGGAGAGAGAGCGGAAGAGGAGGAGAAAAGAGAAGGAGAAGAAGAGAAGGAGAAAAGAGAAGGAGGAAGAGAAACGAAGGAAGGAAAAGAAAAAGAAGGAGAAGAAGGAACGGGGAAAGAAGGGGGCTGTGACGAATTCGTGGGGAAAATACGGGATTATCAAAGAAACTGATATGTGGAACAAGCGACCAGAGTTCACTGCATGGCTGGCTGAAATTAAAAAGGTGAACTTGGAAAGTCTAGCTAATTGGGAAGAGAAGCAGATGTTTAAGGAATTCATGGAGGACCATAACACGGCCACTTTCCCATCTAAAAAGTACTACAATCTTGATGCCTATTACCAGCATAAAATGCTAAAAGATATGAAGAAAGGCCACAAAAAGATTTTGGCTGGGGAACGCACAGTGTTTGATGATGAAGAACAGAGGAGGCAAGAACTACTCGTGGAACGTGAAAAACACAAGGAGGAACAAGTGGAAGCCCTAAAGCGCTCGATGCAGACTGGAATGGCACAAGCAATGAAAGAACAAGCTCGACTGAGGGAGGAGATGGCTTACCAGTATAAGCTTGGAAACTTCGAGGTCTGA

Protein sequence

MYRGSSDNDEDSGGGVGGVGGEDNEAPSKRNSGRSSDVEEGRKRSKSRRKSRDSSDSDEKHDRKRGKSSVRKGKSRRRYSSSEEDSDSEDAESESSESDSDSEHSDAESASNSSGSEGESEEERRRRKRKERRRRREKEERERKRRRKEKEKKRRRKEKEEEKRRKEKKKKEKKERGKKGAVTNSWGKYGIIKETDMWNKRPEFTAWLAEIKKVNLESLANWEEKQMFKEFMEDHNTATFPSKKYYNLDAYYQHKMLKDMKKGHKKILAGERTVFDDEEQRRQELLVEREKHKEEQVEALKRSMQTGMAQAMKEQARLREEMAYQYKLGNFEV

Homology

[Close]

BLAST of Cp4.1LG01g08650 vs. TrEMBL
Match: A0A0A0L2M5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G104880 PE=4 SV=1)

HSP 1 Score: 387.1 bits (993), Expect = 2.1e-104
Identity = 269/344 (78.20%), Postives = 290/344 (84.30%), Query Frame = 1


Query: 3   RGSSDNDEDSGGGVGGVGGEDNEAPSKRNSGRSS---------DVEEGRKRSKSRRKSRD 62
           RGSSDNDE      G   GEDN APSKR SG+ S         D +EGRKR+KSRRKSR+
Sbjct: 13  RGSSDNDEP-----GEQVGEDNSAPSKRISGKDSEKDRENSGPDADEGRKRTKSRRKSRE 72

Query: 63  SSDSDEKHDRKRGKSSVRKGKSRRRYSSSEEDSDSEDAESESSESDSDSEHSDAESASNS 122
           + DSDEKH ++RG+SS RKGKSRRRYS+SEEDSDSE+ ES+SS  DSDS HSD+ESAS+S
Sbjct: 73  TPDSDEKHGKRRGRSSRRKGKSRRRYSTSEEDSDSENTESDSSMYDSDSGHSDSESASSS 132

Query: 123 SGSE--GESEEERRRRKRKERRRRREKEERERKRRRKEKEKKRRRKEKEEEKRRKEKKKK 182
           SGSE   ESE ERR+RKRKERRRRREKE RERKRRRKEKEKKR +KEKEEEKRRKEKKKK
Sbjct: 133 SGSEEDSESEGERRKRKRKERRRRREKE-RERKRRRKEKEKKRMKKEKEEEKRRKEKKKK 192

Query: 183 EKKERGKKGAVTNSWGKYGIIKETDMWNKRPEFTAWLAEIKK---VNLESLANWEEKQMF 242
           EKKERGKKGAVTNSWGK+GIIKETDMW    EF      +     VNLESLANWEEKQMF
Sbjct: 193 EKKERGKKGAVTNSWGKFGIIKETDMWYVTIEFHGCFCLLTAQILVNLESLANWEEKQMF 252

Query: 243 KEFMEDHNTATFPSKKYYNLDAYYQHKMLKDMKKGHKKILAGERTVFDDEEQRRQELLVE 302
           KEFMEDHNTATFPSKKYYNLDAYYQ K+ KDMKKG KK++AGERTVFDDEEQRRQELL+E
Sbjct: 253 KEFMEDHNTATFPSKKYYNLDAYYQRKIQKDMKKGQKKVVAGERTVFDDEEQRRQELLIE 312

Query: 303 REKHKEEQVEALKRSMQTGMAQAMKEQARLREEMAYQYKLGNFE 333
           REKHKEEQVE LKRSMQTGMAQAMKEQARLREEMAYQYKLGNFE
Sbjct: 313 REKHKEEQVEVLKRSMQTGMAQAMKEQARLREEMAYQYKLGNFE 350

[Close]

BLAST of Cp4.1LG01g08650 vs. TrEMBL
Match: A0A0L9UM50_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan05g122400 PE=4 SV=1)

HSP 1 Score: 308.1 bits (788), Expect = 1.3e-80
Identity = 223/330 (67.58%), Postives = 257/330 (77.88%), Query Frame = 1


Query: 22  EDNEAPSKRNSGR-----SSDVEEGRKRSKSRRKSR----DSSDSDEKHDRKRGKSSVRK 81
           +++EAPS+R+S +       D E  R+RS S RKSR    DS D D  H +KR       
Sbjct: 19  KEDEAPSRRDSKKVRENSEVDSETERRRSSSTRKSRGGSSDSDDGDRPHRKKR------- 78

Query: 82  GKSRRRYSSSEED-----SDSEDAESESSESDSDSEHSDAESASNSSGSEGESEEERRRR 141
            KSRRRYSS  +      S SE++ESES  S SDSE+           SE ESEEERRRR
Sbjct: 79  -KSRRRYSSESDSGSGSGSSSEESESESGRSGSDSEY-----------SESESEEERRRR 138

Query: 142 KRKERRRRREKEERERKRRRKEKEKKRRRKEKEEEKRRKE-----KKKKEKKERGKKGAV 201
           ++  RRRR ++EERERKRRRKEKEKKRRR+EKEEE+R+KE     KKKKE++ERGKKGAV
Sbjct: 139 EK--RRRREKEEERERKRRRKEKEKKRRRREKEEERRKKEKLKKKKKKKEREERGKKGAV 198

Query: 202 TNSWGKYGIIKETDMWNKRPEFTAWLAEIKKVNLESLANWEEKQMFKEFMEDHNTATFPS 261
           TNSWGKYG+I+ETDMW KRPEFTAWLAE+K+VNLE+++NWEEKQMFKEFMEDHNT TFPS
Sbjct: 199 TNSWGKYGVIRETDMWTKRPEFTAWLAEVKQVNLENMSNWEEKQMFKEFMEDHNTGTFPS 258

Query: 262 KKYYNLDAYYQHKMLKDMKKGHKKILAGERTVFDDEEQRRQELLVEREKHKEEQVEALKR 321
           KKYYNLDAYY+ +M K+MKKG KK+ A ERTVF+DEEQRRQELL  REKHKEEQV ALK 
Sbjct: 259 KKYYNLDAYYRREMEKEMKKGFKKVNATERTVFNDEEQRRQELLQAREKHKEEQVMALKH 318

Query: 322 SMQTGMAQAMKEQARLREEMAYQYKLGNFE 333
           SMQTGMAQAMKEQA+LREEMAYQYKLGNFE
Sbjct: 319 SMQTGMAQAMKEQAQLREEMAYQYKLGNFE 327

[Close]

BLAST of Cp4.1LG01g08650 vs. TrEMBL
Match: A0A0S3SI91_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.07G129800 PE=4 SV=1)

HSP 1 Score: 308.1 bits (788), Expect = 1.3e-80
Identity = 223/330 (67.58%), Postives = 257/330 (77.88%), Query Frame = 1


Query: 22  EDNEAPSKRNSGR-----SSDVEEGRKRSKSRRKSR----DSSDSDEKHDRKRGKSSVRK 81
           +++EAPS+R+S +       D E  R+RS S RKSR    DS D D  H +KR       
Sbjct: 19  KEDEAPSRRDSKKVRENSEVDSETERRRSSSTRKSRGGSSDSDDGDRPHRKKR------- 78

Query: 82  GKSRRRYSSSEED-----SDSEDAESESSESDSDSEHSDAESASNSSGSEGESEEERRRR 141
            KSRRRYSS  +      S SE++ESES  S SDSE+           SE ESEEERRRR
Sbjct: 79  -KSRRRYSSESDSGSGSGSSSEESESESGRSGSDSEY-----------SESESEEERRRR 138

Query: 142 KRKERRRRREKEERERKRRRKEKEKKRRRKEKEEEKRRKE-----KKKKEKKERGKKGAV 201
           ++  RRRR ++EERERKRRRKEKEKKRRR+EKEEE+R+KE     KKKKE++ERGKKGAV
Sbjct: 139 EK--RRRREKEEERERKRRRKEKEKKRRRREKEEERRKKEKLKKKKKKKEREERGKKGAV 198

Query: 202 TNSWGKYGIIKETDMWNKRPEFTAWLAEIKKVNLESLANWEEKQMFKEFMEDHNTATFPS 261
           TNSWGKYG+I+ETDMW KRPEFTAWLAE+K+VNLE+++NWEEKQMFKEFMEDHNT TFPS
Sbjct: 199 TNSWGKYGVIRETDMWTKRPEFTAWLAEVKQVNLENMSNWEEKQMFKEFMEDHNTGTFPS 258

Query: 262 KKYYNLDAYYQHKMLKDMKKGHKKILAGERTVFDDEEQRRQELLVEREKHKEEQVEALKR 321
           KKYYNLDAYY+ +M K+MKKG KK+ A ERTVF+DEEQRRQELL  REKHKEEQV ALK 
Sbjct: 259 KKYYNLDAYYRREMEKEMKKGFKKVNATERTVFNDEEQRRQELLQAREKHKEEQVMALKH 318

Query: 322 SMQTGMAQAMKEQARLREEMAYQYKLGNFE 333
           SMQTGMAQAMKEQA+LREEMAYQYKLGNFE
Sbjct: 319 SMQTGMAQAMKEQAQLREEMAYQYKLGNFE 327

[Close]

BLAST of Cp4.1LG01g08650 vs. TrEMBL
Match: I1M397_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_13G278100 PE=4 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 5.9e-78
Identity = 223/318 (70.13%), Postives = 250/318 (78.62%), Query Frame = 1


Query: 24  NEAPSKRNSGRSSDVEE-GRKRSKSRRKSRD-SSDSDEKHDRKRGKSSVRKGKSRRRYSS 83
           +E+ S  +SG++ +  E  RK S SRRKSR  SSDSDE     R     RK KSRRRYSS
Sbjct: 74  SESESGSDSGKAREHSETDRKHSNSRRKSRGGSSDSDEGDRAHR-----RKRKSRRRYSS 133

Query: 84  SEEDSDSEDAESESSESDSDSEHSDAESASNSSGSEGESEEERRRRKRKERRRRREKE-E 143
            E DSDS   ESES  S                GSE ESEEER+RR   E+RRRREKE E
Sbjct: 134 -ESDSDSGSEESESERS----------------GSESESEEERKRR---EKRRRREKEDE 193

Query: 144 RERKRRRKEKEKKRRRKEKEEEKRRKE------KKKKEKKERGKKGAVTNSWGKYGIIKE 203
           RERKRRR+EKEKKRRR+EKEEE+RRK+      KKKKEK+ERG KGAVTNSWGKYG+I+E
Sbjct: 194 RERKRRRREKEKKRRRREKEEEERRKKEKLKKKKKKKEKEERG-KGAVTNSWGKYGVIRE 253

Query: 204 TDMWNKRPEFTAWLAEIKKVNLESLANWEEKQMFKEFMEDHNTATFPSKKYYNLDAYYQH 263
           TDMW KRPEFTAWLAE+K+VNLE+++NWEEKQMFKEFMEDHNTATFPSKKYYNLDAYY+ 
Sbjct: 254 TDMWTKRPEFTAWLAEVKQVNLENMSNWEEKQMFKEFMEDHNTATFPSKKYYNLDAYYRR 313

Query: 264 KMLKDMKKGHKKILAGERTVFDDEEQRRQELLVEREKHKEEQVEALKRSMQTGMAQAMKE 323
           +M K+MKKG KK+ A ERT+F+DEEQRRQELL  REKHKEEQV ALK SMQTGMAQAMKE
Sbjct: 314 EMEKEMKKGFKKVQATERTIFNDEEQRRQELLQAREKHKEEQVMALKHSMQTGMAQAMKE 365

Query: 324 QARLREEMAYQYKLGNFE 333
           QA+LREEMAYQYKLGNFE
Sbjct: 374 QAQLREEMAYQYKLGNFE 365

[Close]

BLAST of Cp4.1LG01g08650 vs. TrEMBL
Match: A0A0B2RYB5_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_001543 PE=4 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 5.9e-78
Identity = 223/318 (70.13%), Postives = 250/318 (78.62%), Query Frame = 1


Query: 24  NEAPSKRNSGRSSDVEE-GRKRSKSRRKSRD-SSDSDEKHDRKRGKSSVRKGKSRRRYSS 83
           +E+ S  +SG++ +  E  RK S SRRKSR  SSDSDE     R     RK KSRRRYSS
Sbjct: 74  SESESGSDSGKAREHSETDRKHSNSRRKSRGGSSDSDEGDRAHR-----RKRKSRRRYSS 133

Query: 84  SEEDSDSEDAESESSESDSDSEHSDAESASNSSGSEGESEEERRRRKRKERRRRREKE-E 143
            E DSDS   ESES  S                GSE ESEEER+RR   E+RRRREKE E
Sbjct: 134 -ESDSDSGSEESESERS----------------GSESESEEERKRR---EKRRRREKEDE 193

Query: 144 RERKRRRKEKEKKRRRKEKEEEKRRKE------KKKKEKKERGKKGAVTNSWGKYGIIKE 203
           RERKRRR+EKEKKRRR+EKEEE+RRK+      KKKKEK+ERG KGAVTNSWGKYG+I+E
Sbjct: 194 RERKRRRREKEKKRRRREKEEEERRKKEKLKKKKKKKEKEERG-KGAVTNSWGKYGVIRE 253

Query: 204 TDMWNKRPEFTAWLAEIKKVNLESLANWEEKQMFKEFMEDHNTATFPSKKYYNLDAYYQH 263
           TDMW KRPEFTAWLAE+K+VNLE+++NWEEKQMFKEFMEDHNTATFPSKKYYNLDAYY+ 
Sbjct: 254 TDMWTKRPEFTAWLAEVKQVNLENMSNWEEKQMFKEFMEDHNTATFPSKKYYNLDAYYRR 313

Query: 264 KMLKDMKKGHKKILAGERTVFDDEEQRRQELLVEREKHKEEQVEALKRSMQTGMAQAMKE 323
           +M K+MKKG KK+ A ERT+F+DEEQRRQELL  REKHKEEQV ALK SMQTGMAQAMKE
Sbjct: 314 EMEKEMKKGFKKVQATERTIFNDEEQRRQELLQAREKHKEEQVMALKHSMQTGMAQAMKE 365

Query: 324 QARLREEMAYQYKLGNFE 333
           QA+LREEMAYQYKLGNFE
Sbjct: 374 QAQLREEMAYQYKLGNFE 365

[Close]

BLAST of Cp4.1LG01g08650 vs. TAIR10
Match: AT5G53800.1 (AT5G53800.1 unknown protein)

HSP 1 Score: 235.7 bits (600), Expect = 4.0e-62
Identity = 186/315 (59.05%), Postives = 229/315 (72.70%), Query Frame = 1


Query: 28  SKRNSGRSSDVEEGRKRSKSRRKSRDSSDSD---------EKHDRKRGKSSVRKGKSRRR 87
           S ++SG   DV   R+ SK R K  + S S+         EK +R+R +    K KS R+
Sbjct: 34  SGKDSGEEKDVSR-RRESKRRTKDGNDSGSESGLESGSESEKEERRRSRKDRGKRKSDRK 93

Query: 88  YSSSEEDSDSEDAESESSESDSDSEHSDAESASNSSGSEGESEEERRRRKRKERRRRREK 147
            S S        + S  SES+S+SE+SD+E        E ESE+ERRRRKRK  R+ RE+
Sbjct: 94  SSRSRRRRRDYSSSSSDSESESESEYSDSE--------ESESEDERRRRKRK--RKEREE 153

Query: 148 EERERKRRRKEKEKKRRRK-EKEEEKRRKEKKKKEKKERGKKGAVTNSWGKYGIIKETDM 207
           EE+ERKRRR+EK+KK+R K +K+ +K+RKEKKKK K E+ KKGAVT SWGKYGII+ETDM
Sbjct: 154 EEKERKRRRREKDKKKRNKSDKDGDKKRKEKKKK-KSEKVKKGAVTESWGKYGIIRETDM 213

Query: 208 WNKRPEFTAWLAEIKKVNLESLANWEEKQMFKEFMEDHNTATFPSKKYYNLDAYYQHKML 267
           WNKRPEFTAWL E+KKVNLESL  WEEK+MFK+FMEDHNT TF SKKYY++D YY+ K+ 
Sbjct: 214 WNKRPEFTAWLLEVKKVNLESLPPWEEKKMFKDFMEDHNTGTFTSKKYYDIDGYYRLKLE 273

Query: 268 KDMKKGHKKILAGERTVFDDEEQRRQELLVEREKHKEEQVEALKRSMQTGMAQAMKEQAR 327
           K+MKKG KK    ERTVF+DEEQRR E+   RE+ KEE+V ALKRSM+ GMAQAMKEQAR
Sbjct: 274 KEMKKGLKKAGISERTVFNDEEQRRLEMQELRERQKEEEVLALKRSMEGGMAQAMKEQAR 333

Query: 328 LREEMAYQYKLGNFE 333
           L+EEM Y YK+G+ E
Sbjct: 334 LKEEMVYLYKIGDME 336

[Close]

BLAST of Cp4.1LG01g08650 vs. NCBI nr
Match: gi|659102693|ref|XP_008452265.1| (PREDICTED: LOW QUALITY PROTEIN: U1 small nuclear ribonucleoprotein 70 kDa [Cucumis melo])

HSP 1 Score: 429.1 bits (1102), Expect = 7.1e-117
Identity = 284/341 (83.28%), Postives = 304/341 (89.15%), Query Frame = 1


Query: 3   RGSSDNDEDSGGGVGGVGGEDNEAPSKRNSGRSS---------DVEEGRKRSKSRRKSRD 62
           RGSSD+DE      G   GEDN APSKR SG+ S         D +EGRKR+KSRRKSR+
Sbjct: 13  RGSSDDDEP-----GEREGEDNSAPSKRISGKDSEKDRENSGSDADEGRKRTKSRRKSRE 72

Query: 63  SSDSDEKHDRKRGKSSVRKGKSRRRYSSSEEDSDSEDAESESSESDSDSEHSDAESASNS 122
           +SDSDEKH ++RG+SS RKGKSRRRYSSSEEDSDSED ES+SS  DS+S +SD+ESAS+S
Sbjct: 73  NSDSDEKHGKRRGRSSRRKGKSRRRYSSSEEDSDSEDTESDSSMYDSESGYSDSESASSS 132

Query: 123 SGSE--GESEEERRRRKRKERRRRREKEERERKRRRKEKEKKRRRKEKEEEKRRKEKKKK 182
           SGSE   ESEEERRRRKRKERRRRREKE RERKRRRKEKEKKRR+K +  EKRRKEKKKK
Sbjct: 133 SGSEEDSESEEERRRRKRKERRRRREKE-RERKRRRKEKEKKRRKKRERXEKRRKEKKKK 192

Query: 183 EKKERGKKGAVTNSWGKYGIIKETDMWNKRPEFTAWLAEIKKVNLESLANWEEKQMFKEF 242
           EKKERGKKGAVTNSWGKYGIIKETDMWNKRPEFTAWLAEIKKVNLESLANWEEKQMFKEF
Sbjct: 193 EKKERGKKGAVTNSWGKYGIIKETDMWNKRPEFTAWLAEIKKVNLESLANWEEKQMFKEF 252

Query: 243 MEDHNTATFPSKKYYNLDAYYQHKMLKDMKKGHKKILAGERTVFDDEEQRRQELLVEREK 302
           MEDHNTATFPSKKYYNLDAYYQ K+ KDMKKGHKK++AGERTVFDDEEQRRQELL+EREK
Sbjct: 253 MEDHNTATFPSKKYYNLDAYYQRKIQKDMKKGHKKVVAGERTVFDDEEQRRQELLIEREK 312

Query: 303 HKEEQVEALKRSMQTGMAQAMKEQARLREEMAYQYKLGNFE 333
           HKEEQVEALKRSMQTGMAQAMKEQARLREEMAYQYKLGNFE
Sbjct: 313 HKEEQVEALKRSMQTGMAQAMKEQARLREEMAYQYKLGNFE 347

[Close]

BLAST of Cp4.1LG01g08650 vs. NCBI nr
Match: gi|449431832|ref|XP_004133704.1| (PREDICTED: nucleolar protein 58 [Cucumis sativus])

HSP 1 Score: 425.2 bits (1092), Expect = 1.0e-115
Identity = 282/341 (82.70%), Postives = 302/341 (88.56%), Query Frame = 1


Query: 3   RGSSDNDEDSGGGVGGVGGEDNEAPSKRNSGRSS---------DVEEGRKRSKSRRKSRD 62
           RGSSDNDE      G   GEDN APSKR SG+ S         D +EGRKR+KSRRKSR+
Sbjct: 13  RGSSDNDEP-----GEQVGEDNSAPSKRISGKDSEKDRENSGPDADEGRKRTKSRRKSRE 72

Query: 63  SSDSDEKHDRKRGKSSVRKGKSRRRYSSSEEDSDSEDAESESSESDSDSEHSDAESASNS 122
           + DSDEKH ++RG+SS RKGKSRRRYS+SEEDSDSE+ ES+SS  DSDS HSD+ESAS+S
Sbjct: 73  TPDSDEKHGKRRGRSSRRKGKSRRRYSTSEEDSDSENTESDSSMYDSDSGHSDSESASSS 132

Query: 123 SGSE--GESEEERRRRKRKERRRRREKEERERKRRRKEKEKKRRRKEKEEEKRRKEKKKK 182
           SGSE   ESE ERR+RKRKERRRRREKE RERKRRRKEKEKKR +KEKEEEKRRKEKKKK
Sbjct: 133 SGSEEDSESEGERRKRKRKERRRRREKE-RERKRRRKEKEKKRMKKEKEEEKRRKEKKKK 192

Query: 183 EKKERGKKGAVTNSWGKYGIIKETDMWNKRPEFTAWLAEIKKVNLESLANWEEKQMFKEF 242
           EKKERGKKGAVTNSWGK+GIIKETDMWNKRPEFTAWLAEIKKVNLESLANWEEKQMFKEF
Sbjct: 193 EKKERGKKGAVTNSWGKFGIIKETDMWNKRPEFTAWLAEIKKVNLESLANWEEKQMFKEF 252

Query: 243 MEDHNTATFPSKKYYNLDAYYQHKMLKDMKKGHKKILAGERTVFDDEEQRRQELLVEREK 302
           MEDHNTATFPSKKYYNLDAYYQ K+ KDMKKG KK++AGERTVFDDEEQRRQELL+EREK
Sbjct: 253 MEDHNTATFPSKKYYNLDAYYQRKIQKDMKKGQKKVVAGERTVFDDEEQRRQELLIEREK 312

Query: 303 HKEEQVEALKRSMQTGMAQAMKEQARLREEMAYQYKLGNFE 333
           HKEEQVE LKRSMQTGMAQAMKEQARLREEMAYQYKLGNFE
Sbjct: 313 HKEEQVEVLKRSMQTGMAQAMKEQARLREEMAYQYKLGNFE 347

[Close]

BLAST of Cp4.1LG01g08650 vs. NCBI nr
Match: gi|700201102|gb|KGN56235.1| (hypothetical protein Csa_3G104880 [Cucumis sativus])

HSP 1 Score: 387.1 bits (993), Expect = 3.1e-104
Identity = 269/344 (78.20%), Postives = 290/344 (84.30%), Query Frame = 1


Query: 3   RGSSDNDEDSGGGVGGVGGEDNEAPSKRNSGRSS---------DVEEGRKRSKSRRKSRD 62
           RGSSDNDE      G   GEDN APSKR SG+ S         D +EGRKR+KSRRKSR+
Sbjct: 13  RGSSDNDEP-----GEQVGEDNSAPSKRISGKDSEKDRENSGPDADEGRKRTKSRRKSRE 72

Query: 63  SSDSDEKHDRKRGKSSVRKGKSRRRYSSSEEDSDSEDAESESSESDSDSEHSDAESASNS 122
           + DSDEKH ++RG+SS RKGKSRRRYS+SEEDSDSE+ ES+SS  DSDS HSD+ESAS+S
Sbjct: 73  TPDSDEKHGKRRGRSSRRKGKSRRRYSTSEEDSDSENTESDSSMYDSDSGHSDSESASSS 132

Query: 123 SGSE--GESEEERRRRKRKERRRRREKEERERKRRRKEKEKKRRRKEKEEEKRRKEKKKK 182
           SGSE   ESE ERR+RKRKERRRRREKE RERKRRRKEKEKKR +KEKEEEKRRKEKKKK
Sbjct: 133 SGSEEDSESEGERRKRKRKERRRRREKE-RERKRRRKEKEKKRMKKEKEEEKRRKEKKKK 192

Query: 183 EKKERGKKGAVTNSWGKYGIIKETDMWNKRPEFTAWLAEIKK---VNLESLANWEEKQMF 242
           EKKERGKKGAVTNSWGK+GIIKETDMW    EF      +     VNLESLANWEEKQMF
Sbjct: 193 EKKERGKKGAVTNSWGKFGIIKETDMWYVTIEFHGCFCLLTAQILVNLESLANWEEKQMF 252

Query: 243 KEFMEDHNTATFPSKKYYNLDAYYQHKMLKDMKKGHKKILAGERTVFDDEEQRRQELLVE 302
           KEFMEDHNTATFPSKKYYNLDAYYQ K+ KDMKKG KK++AGERTVFDDEEQRRQELL+E
Sbjct: 253 KEFMEDHNTATFPSKKYYNLDAYYQRKIQKDMKKGQKKVVAGERTVFDDEEQRRQELLIE 312

Query: 303 REKHKEEQVEALKRSMQTGMAQAMKEQARLREEMAYQYKLGNFE 333
           REKHKEEQVE LKRSMQTGMAQAMKEQARLREEMAYQYKLGNFE
Sbjct: 313 REKHKEEQVEVLKRSMQTGMAQAMKEQARLREEMAYQYKLGNFE 350

[Close]

BLAST of Cp4.1LG01g08650 vs. NCBI nr
Match: gi|1009170277|ref|XP_015866113.1| (PREDICTED: RNA-binding protein 25 [Ziziphus jujuba])

HSP 1 Score: 320.9 bits (821), Expect = 2.7e-84
Identity = 233/336 (69.35%), Postives = 268/336 (79.76%), Query Frame = 1


Query: 1   MYRGSSDNDEDSGGGVGGVGGEDNEAPS-KRNSGRSSDVEEGRKRS-KSRRKSRDSSDSD 60
           M R  +D   +  G       E+NE  S K      S ++E RKRS KSRRK+R SSDSD
Sbjct: 1   MARDRNDTAPEKPGYEDSEKEEENERKSGKVRESSGSVIDEDRKRSGKSRRKARYSSDSD 60

Query: 61  EKHDRKRGKSSVRKGK-SRRRYSSSEEDSDSEDAESESSESDSDSEHSDAESASNSSGSE 120
           +K +  RG+   RK K SRRRYSS +++ DS    SES  SDS+   SD+ES S SS SE
Sbjct: 61  DKEEISRGRGERRKRKLSRRRYSSDDDEDDSSSG-SESESSDSERSGSDSESESGSSESE 120

Query: 121 GESEEERRRRKRKERRRRREK-EERERKRRRKEKEKKRRRKEKEEEKRRKEKKKKEKKER 180
               E RRR+KR+ERRRRREK EERERKRR+KEKEKKRRR+E+EEE+++K+KKKKEKKER
Sbjct: 121 DSETERRRRKKRRERRRRREKEEERERKRRKKEKEKKRRRREREEERKKKKKKKKEKKER 180

Query: 181 GKKGAVTNSWGKYGIIKETDMWNKRPEFTAWLAEIKKVNLESLANWEEKQMFKEFMEDHN 240
           GK GAVTNSWGKYGII+ETDMW KRPEFTAWLAE+K+VNLESL NWEEKQMFKEFMEDHN
Sbjct: 181 GKTGAVTNSWGKYGIIRETDMWTKRPEFTAWLAEVKQVNLESLPNWEEKQMFKEFMEDHN 240

Query: 241 TATFPSKKYYNLDAYYQHKMLKDMKKGHKKILAGERTVFDDEEQRRQELLVEREKHKEEQ 300
           TATFPSKKYYNLDAYYQ KM K+MK+G KK++  ERTVF+DEEQRRQELL  REK KE +
Sbjct: 241 TATFPSKKYYNLDAYYQLKMEKEMKRGFKKVVEKERTVFNDEEQRRQELLQAREKQKESE 300

Query: 301 VEALKRSMQTGMAQAMKEQARLREEMAYQYKLGNFE 333
           VEALKRSMQ+G+AQAMKEQA+LREEMAYQYKLGNFE
Sbjct: 301 VEALKRSMQSGLAQAMKEQAQLREEMAYQYKLGNFE 335

[Close]

BLAST of Cp4.1LG01g08650 vs. NCBI nr
Match: gi|502084459|ref|XP_004487694.1| (PREDICTED: nucleolar protein 58 [Cicer arietinum])

HSP 1 Score: 311.2 bits (796), Expect = 2.1e-81
Identity = 227/321 (70.72%), Postives = 261/321 (81.31%), Query Frame = 1


Query: 22  EDNEAPSKRNSGRSS-----DVEEGRKRSKSRRKSRDSSDSDEKHDRKRG-KSSVRKGKS 81
           +D+EAPSKR+S ++      D E  RK S SRRKSRDSSDS        G K   RK KS
Sbjct: 21  DDDEAPSKRHSRKTREDSDVDSETDRKHSSSRRKSRDSSDS-------DGDKRRRRKRKS 80

Query: 82  RRRYSSSEEDSDSE-DAESESSESDSDSEHSDAESASNSSGSEGESEEERRRRKRKERRR 141
           RRRYSS   DSDSE D+ S S   D++SE S ++S  + S S  ESEEER+ RKRKE++R
Sbjct: 81  RRRYSS---DSDSESDSGSGSDSEDNESERSGSDSKYSDSESGTESEEERKERKRKEKKR 140

Query: 142 RREKEERERKRRRKEKEKKRRRKEKEEEKRRKEK---KKKEKKERGKKGAVTNSWGKYGI 201
           RRE+E  E K+RR+EKEKKRR+KEKEEE+R+KEK   KKKEKKERGKKGAVTN WGKYGI
Sbjct: 141 RRERE--EEKKRRREKEKKRRKKEKEEERRKKEKRKMKKKEKKERGKKGAVTNLWGKYGI 200

Query: 202 IKETDMWNKRPEFTAWLAEIKKVNLESLANWEEKQMFKEFMEDHNTATFPSKKYYNLDAY 261
           I+ETDMW KRPEFTAWLAE+K+VN+E L+NWEEKQMFKEFMEDHNTATFPSKKYY+LDAY
Sbjct: 201 IRETDMWTKRPEFTAWLAEVKQVNMEHLSNWEEKQMFKEFMEDHNTATFPSKKYYSLDAY 260

Query: 262 YQHKMLKDMKKGHKKILAGERTVFDDEEQRRQELLVEREKHKEEQVEALKRSMQTGMAQA 321
           Y+ +M K+MKKG KK+ A ERTVF+DEEQRRQELL  REKHKEEQV ALKRSM++GMAQA
Sbjct: 261 YRRQMEKEMKKGIKKVQAKERTVFNDEEQRRQELLQAREKHKEEQVIALKRSMESGMAQA 320

Query: 322 MKEQARLREEMAYQYKLGNFE 333
           MKEQA+LREEMAYQYKLGNFE
Sbjct: 321 MKEQAQLREEMAYQYKLGNFE 329

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g08650 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG01g08650 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L2M5_CUCSA	2.1e-104	78.20	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G104880 PE=4 SV=1	[more]
A0A0L9UM50_PHAAN	1.3e-80	67.58	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan05g122400 PE=4 SV=1	[more]
A0A0S3SI91_PHAAN	1.3e-80	67.58	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.07G129800 PE=...	[more]
I1M397_SOYBN	5.9e-78	70.13	Uncharacterized protein OS=Glycine max GN=GLYMA_13G278100 PE=4 SV=1	[more]
A0A0B2RYB5_GLYSO	5.9e-78	70.13	Uncharacterized protein OS=Glycine soja GN=glysoja_001543 PE=4 SV=1	[more]

BLAST of Cp4.1LG01g08650 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G53800.1	4.0e-62	59.05	unknown protein	[more]

BLAST of Cp4.1LG01g08650 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659102693\|ref\|XP_008452265.1\|	7.1e-117	83.28	PREDICTED: LOW QUALITY PROTEIN: U1 small nuclear ribonucleoprotein 70 kDa [Cucum...	[more]
gi\|449431832\|ref\|XP_004133704.1\|	1.0e-115	82.70	PREDICTED: nucleolar protein 58 [Cucumis sativus]	[more]
gi\|700201102\|gb\|KGN56235.1\|	3.1e-104	78.20	hypothetical protein Csa_3G104880 [Cucumis sativus]	[more]
gi\|1009170277\|ref\|XP_015866113.1\|	2.7e-84	69.35	PREDICTED: RNA-binding protein 25 [Ziziphus jujuba]	[more]
gi\|502084459\|ref\|XP_004487694.1\|	2.1e-81	70.72	PREDICTED: nucleolar protein 58 [Cicer arietinum]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0009560	embryo sac egg cell differentiation
biological_process	GO:0008284	positive regulation of cell proliferation
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0004386	helicase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g08650.1	Cp4.1LG01g08650.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 275..302 score: -coord: 120..177 scor
None	No IPR available	PANTHER	PTHR34689	FAMILY NOT NAMED	coord: 2..333 score: 4.5E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG01g08650	Cucsa.074710	Cucumber (Gy14) v1	cgycpeB0119
Cp4.1LG01g08650	CmaCh04G009080	Cucurbita maxima (Rimu)	cmacpeB720
Cp4.1LG01g08650	CmoCh04G009750	Cucurbita moschata (Rifu)	cmocpeB673
Cp4.1LG01g08650	Cla011781	Watermelon (97103) v1	cpewmB405
Cp4.1LG01g08650	Csa3G104880	Cucumber (Chinese Long) v2	cpecuB393
Cp4.1LG01g08650	MELO3C016520	Melon (DHL92) v3.5.1	cpemeB409
Cp4.1LG01g08650	ClCG10G006870	Watermelon (Charleston Gray)	cpewcgB349
Cp4.1LG01g08650	CSPI03G06120	Wild cucumber (PI 183967)	cpecpiB392
Cp4.1LG01g08650	Lsi05G007120	Bottle gourd (USVL1VR-Ls)	cpelsiB370
Cp4.1LG01g08650	MELO3C016520.2	Melon (DHL92) v3.6.1	cpemedB482
Cp4.1LG01g08650	CsaV3_3G006220	Cucumber (Chinese Long) v3	cpecucB0491
Cp4.1LG01g08650	CsGy3G006220	Cucumber (Gy14) v2	cgybcpeB369
Cp4.1LG01g08650	Carg00027	Silver-seed gourd	carcpeB0938

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG01g08650	Cucurbita moschata (Rifu)	cmocpeB312
Cp4.1LG01g08650	Silver-seed gourd	carcpeB0667
Cp4.1LG01g08650	Wax gourd	cpewgoB0481
Cp4.1LG01g08650	Wax gourd	cpewgoB0485
Cp4.1LG01g08650	Wax gourd	cpewgoB0489
Cp4.1LG01g08650	Cucurbita pepo (Zucchini)	cpecpeB233
Cp4.1LG01g08650	Cucurbita maxima (Rimu)	cmacpeB350