CsaV3_2G036050 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_2G036050
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Fom-2 protein
Location	chr2 : 24235566 .. 24235908 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAATCGTTGGAAATATGCATAATTATGATTTTGGCATCCTTCAGCACCTTCCTTCCCTTAAACAAATTACTTTAGTCGAGGATGAGTTGAGCAACAATAGTGTAACGCAAATTCCTCAACAACTCCAACACCTCACTGCCTTGGAATTTCTGTCCATTAAAAATTTTGGAGGCATTGAAGCTTTGCCAGAATGGTTAGGAAACTTTGTATGTTTGCAAACACTCGGTCTTTCTAATTGCAAAAAATTGAAAAAATTGCCTTCTACAGGAGCAATTCTACGTCTCACCAAATTAAAAAAATTGTATGCTTATAAATGTCCACAGCTACTACTTGACGAAG

mRNA sequence

ATGGAAATCGTTGGAAATATGCATAATTATGATTTTGGCATCCTTCAGCACCTTCCTTCCCTTAAACAAATTACTTTAGTCGAGGATGAGTTGAGCAACAATAGTGTAACGCAAATTCCTCAACAACTCCAACACCTCACTGCCTTGGAATTTCTGTCCATTAAAAATTTTGGAGGCATTGAAGCTTTGCCAGAATGGTTAGGAAACTTTGTATGTTTGCAAACACTCGGTCTTTCTAATTGCAAAAAATTGAAAAAATTGCCTTCTACAGGAGCAATTCTACGTCTCACCAAATTAAAAAAATTGTATGCTTATAAATGTCCACAGCTACTACTTGACGAAG

Coding sequence (CDS)

ATGGAAATCGTTGGAAATATGCATAATTATGATTTTGGCATCCTTCAGCACCTTCCTTCCCTTAAACAAATTACTTTAGTCGAGGATGAGTTGAGCAACAATAGTGTAACGCAAATTCCTCAACAACTCCAACACCTCACTGCCTTGGAATTTCTGTCCATTAAAAATTTTGGAGGCATTGAAGCTTTGCCAGAATGGTTAGGAAACTTTGTATGTTTGCAAACACTCGGTCTTTCTAATTGCAAAAAATTGAAAAAATTGCCTTCTACAGGAGCAATTCTACGTCTCACCAAATTAAAAAAATTGTATGCTTATAAATGTCCACAGCTACTACTTGACGAAG

Protein sequence

MEIVGNMHNYDFGILQHLPSLKQITLVEDELSNNSVTQIPQQLQHLTALEFLSIKNFGGIEALPEWLGNFVCLQTLGLSNCKKLKKLPSTGAILRLTKLKKLYAYKCPQLLLDEX

Homology

[Close]

BLAST of CsaV3_2G036050 vs. NCBI nr
Match: AAT77098.1 (Fom-2 protein, partial [Cucumis melo])

HSP 1 Score: 196.1 bits (497), Expect = 6.8e-47
Identity = 98/112 (87.50%), Postives = 103/112 (91.96%), Query Frame = 0


Query: 1   MEIVGNMHNYDFGILQHLPSLKQITLVEDELSNNSVTQIPQQLQHLTALEFLSIKNFGGI 60
           M+IVGNM NYDFGILQHLPSLKQITLVEDELSNNSVTQIPQQLQHLTALEFLSI+NFGGI
Sbjct: 416 MKIVGNMQNYDFGILQHLPSLKQITLVEDELSNNSVTQIPQQLQHLTALEFLSIENFGGI 475

Query: 61  EALPEWLGNFVCLQTLGLSNCKKLKKLPSTGAILRLTKLKKLYAYKCPQLLL 113
           EALPEWLGNFVCLQTL L NCK LKKLPST A+L LTKL +L A +CPQLLL
Sbjct: 476 EALPEWLGNFVCLQTLSLFNCKNLKKLPSTEAMLCLTKLNRLDACRCPQLLL 527

[Close]

BLAST of CsaV3_2G036050 vs. NCBI nr
Match: AAT77094.1 (Fom-2 protein, partial [Cucumis melo] >AAT77095.1 Fom-2 protein, partial [Cucumis melo] >AAT77096.1 Fom-2 protein, partial [Cucumis melo])

HSP 1 Score: 190.3 bits (482), Expect = 3.7e-45
Identity = 94/114 (82.46%), Postives = 102/114 (89.47%), Query Frame = 0


Query: 1   MEIVGNMHNYDFGILQHLPSLKQITLVEDELSNNSVTQIPQQLQHLTALEFLSIKNFGGI 60
           M IVGN+ NYDFGILQHLPSLK+ITLVEDELSNNSVTQIPQQLQHLT+LEFLSI+NFGGI
Sbjct: 393 MTIVGNIQNYDFGILQHLPSLKKITLVEDELSNNSVTQIPQQLQHLTSLEFLSIENFGGI 452

Query: 61  EALPEWLGNFVCLQTLGLSNCKKLKKLPSTGAILRLTKLKKLYAYKCPQLLLDE 115
           EALPEWLGN VCLQTL    C+ LKKLPST A+LRLTKL KLYA +CP LLL+E
Sbjct: 453 EALPEWLGNLVCLQTLCFLCCRNLKKLPSTEAMLRLTKLNKLYACECPMLLLEE 506

[Close]

BLAST of CsaV3_2G036050 vs. NCBI nr
Match: ABB91438.1 (R-FOM-2 [Cucumis melo])

HSP 1 Score: 190.3 bits (482), Expect = 3.7e-45
Identity = 94/114 (82.46%), Postives = 102/114 (89.47%), Query Frame = 0


Query: 1    MEIVGNMHNYDFGILQHLPSLKQITLVEDELSNNSVTQIPQQLQHLTALEFLSIKNFGGI 60
            M IVGN+ NYDFGILQHLPSLK+ITLVEDELSNNSVTQIPQQLQHLT+LEFLSI+NFGGI
Sbjct: 933  MTIVGNIQNYDFGILQHLPSLKKITLVEDELSNNSVTQIPQQLQHLTSLEFLSIENFGGI 992

Query: 61   EALPEWLGNFVCLQTLGLSNCKKLKKLPSTGAILRLTKLKKLYAYKCPQLLLDE 115
            EALPEWLGN VCLQTL    C+ LKKLPST A+LRLTKL KLYA +CP LLL+E
Sbjct: 993  EALPEWLGNLVCLQTLCFLCCRNLKKLPSTEAMLRLTKLNKLYACECPMLLLEE 1046

[Close]

BLAST of CsaV3_2G036050 vs. NCBI nr
Match: AAS80152.1 (FOM-2 [Cucumis melo])

HSP 1 Score: 183.7 bits (465), Expect = 3.5e-43
Identity = 91/114 (79.82%), Postives = 100/114 (87.72%), Query Frame = 0


Query: 1    MEIVGNMHNYDFGILQHLPSLKQITLVEDELSNNSVTQIPQQLQHLTALEFLSIKNFGGI 60
            M IVGN+ NYDFGILQHLPSLK+ITLVE +LSNNSV QIPQQLQHLT+LEFLSI+NFGGI
Sbjct: 933  MTIVGNIQNYDFGILQHLPSLKKITLVEGKLSNNSVKQIPQQLQHLTSLEFLSIENFGGI 992

Query: 61   EALPEWLGNFVCLQTLGLSNCKKLKKLPSTGAILRLTKLKKLYAYKCPQLLLDE 115
            EALPEWLGN VCLQTL    C+ LKKLPST A+LRLTKL KLYA +CP LLL+E
Sbjct: 993  EALPEWLGNLVCLQTLCFLCCRNLKKLPSTEAMLRLTKLNKLYACECPMLLLEE 1046

[Close]

BLAST of CsaV3_2G036050 vs. NCBI nr
Match: AAT77097.1 (Fom-2 protein, partial [Cucumis melo])

HSP 1 Score: 183.7 bits (465), Expect = 3.5e-43
Identity = 91/114 (79.82%), Postives = 100/114 (87.72%), Query Frame = 0


Query: 1   MEIVGNMHNYDFGILQHLPSLKQITLVEDELSNNSVTQIPQQLQHLTALEFLSIKNFGGI 60
           M IVGN+ NYDFGILQHLPSLK+ITLVE +LSNNSV QIPQQLQHLT+LEFLSI+NFGGI
Sbjct: 393 MTIVGNIQNYDFGILQHLPSLKKITLVEGKLSNNSVKQIPQQLQHLTSLEFLSIENFGGI 452

Query: 61  EALPEWLGNFVCLQTLGLSNCKKLKKLPSTGAILRLTKLKKLYAYKCPQLLLDE 115
           EALPEWLGN VCLQTL    C+ LKKLPST A+LRLTKL KLYA +CP LLL+E
Sbjct: 453 EALPEWLGNLVCLQTLCFLCCRNLKKLPSTEAMLRLTKLNKLYACECPMLLLEE 506

[Close]

BLAST of CsaV3_2G036050 vs. TAIR10
Match: AT1G72840.2 (Disease resistance protein (TIR-NBS-LRR class))

HSP 1 Score: 42.4 bits (98), Expect = 2.3e-04
Identity = 27/73 (36.99%), Postives = 39/73 (53.42%), Query Frame = 0


Query: 26  LVEDELSNNSVTQIPQQLQHLTALEFLSIKNFGGIE--ALPEWLGNFVCLQTLGLSNCKK 85
           L E +L N ++  IP+ +  L  LE L +   GG +   LP  +G    L+ L LSNC++
Sbjct: 796 LTELKLINLNIEDIPEDICQLQLLETLDL---GGNDFVYLPTSMGQLAMLKYLSLSNCRR 855

Query: 86  LKKLPSTGAILRL 97
           LK LP    + RL
Sbjct: 856 LKALPQLSQVERL 865

[Close]

BLAST of CsaV3_2G036050 vs. TAIR10
Match: AT5G45060.1 (Disease resistance protein (TIR-NBS-LRR class) family)

HSP 1 Score: 42.4 bits (98), Expect = 2.3e-04
Identity = 23/79 (29.11%), Postives = 40/79 (50.63%), Query Frame = 0


Query: 15  LQHLPSLKQITLVEDE-----LSNNSVTQIPQQLQHLTALEFLSIKNFGGIEALPEWLGN 74
           L +  + K+  L+ +      L   S++Q+P  + +L  L  L++K+   +E +P  +  
Sbjct: 712 LSNCSNFKEFPLIPENLKALYLDGTSISQLPDNVGNLKRLVLLNMKDCKVLETIPTCVSE 771

Query: 75  FVCLQTLGLSNCKKLKKLP 89
              LQ L LS C KLK+ P
Sbjct: 772 LKTLQKLVLSGCSKLKEFP 790

[Close]

BLAST of CsaV3_2G036050 vs. TrEMBL
Match: tr|Q694W1|Q694W1_CUCME (Fom-2 protein (Fragment) OS=Cucumis melo OX=3656 GN=Fom-2 PE=4 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 4.5e-47
Identity = 98/112 (87.50%), Postives = 103/112 (91.96%), Query Frame = 0


Query: 1   MEIVGNMHNYDFGILQHLPSLKQITLVEDELSNNSVTQIPQQLQHLTALEFLSIKNFGGI 60
           M+IVGNM NYDFGILQHLPSLKQITLVEDELSNNSVTQIPQQLQHLTALEFLSI+NFGGI
Sbjct: 416 MKIVGNMQNYDFGILQHLPSLKQITLVEDELSNNSVTQIPQQLQHLTALEFLSIENFGGI 475

Query: 61  EALPEWLGNFVCLQTLGLSNCKKLKKLPSTGAILRLTKLKKLYAYKCPQLLL 113
           EALPEWLGNFVCLQTL L NCK LKKLPST A+L LTKL +L A +CPQLLL
Sbjct: 476 EALPEWLGNFVCLQTLSLFNCKNLKKLPSTEAMLCLTKLNRLDACRCPQLLL 527

[Close]

BLAST of CsaV3_2G036050 vs. TrEMBL
Match: tr|Q694W4|Q694W4_CUCME (Fom-2 protein (Fragment) OS=Cucumis melo OX=3656 GN=Fom-2 PE=4 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 2.5e-45
Identity = 94/114 (82.46%), Postives = 102/114 (89.47%), Query Frame = 0


Query: 1   MEIVGNMHNYDFGILQHLPSLKQITLVEDELSNNSVTQIPQQLQHLTALEFLSIKNFGGI 60
           M IVGN+ NYDFGILQHLPSLK+ITLVEDELSNNSVTQIPQQLQHLT+LEFLSI+NFGGI
Sbjct: 393 MTIVGNIQNYDFGILQHLPSLKKITLVEDELSNNSVTQIPQQLQHLTSLEFLSIENFGGI 452

Query: 61  EALPEWLGNFVCLQTLGLSNCKKLKKLPSTGAILRLTKLKKLYAYKCPQLLLDE 115
           EALPEWLGN VCLQTL    C+ LKKLPST A+LRLTKL KLYA +CP LLL+E
Sbjct: 453 EALPEWLGNLVCLQTLCFLCCRNLKKLPSTEAMLRLTKLNKLYACECPMLLLEE 506

[Close]

BLAST of CsaV3_2G036050 vs. TrEMBL
Match: tr|Q2V727|Q2V727_CUCME (R-FOM-2 OS=Cucumis melo OX=3656 PE=3 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 2.5e-45
Identity = 94/114 (82.46%), Postives = 102/114 (89.47%), Query Frame = 0


Query: 1    MEIVGNMHNYDFGILQHLPSLKQITLVEDELSNNSVTQIPQQLQHLTALEFLSIKNFGGI 60
            M IVGN+ NYDFGILQHLPSLK+ITLVEDELSNNSVTQIPQQLQHLT+LEFLSI+NFGGI
Sbjct: 933  MTIVGNIQNYDFGILQHLPSLKKITLVEDELSNNSVTQIPQQLQHLTSLEFLSIENFGGI 992

Query: 61   EALPEWLGNFVCLQTLGLSNCKKLKKLPSTGAILRLTKLKKLYAYKCPQLLLDE 115
            EALPEWLGN VCLQTL    C+ LKKLPST A+LRLTKL KLYA +CP LLL+E
Sbjct: 993  EALPEWLGNLVCLQTLCFLCCRNLKKLPSTEAMLRLTKLNKLYACECPMLLLEE 1046

[Close]

BLAST of CsaV3_2G036050 vs. TrEMBL
Match: tr|Q6E436|Q6E436_CUCME (FOM-2 OS=Cucumis melo OX=3656 GN=Fom-2 PE=3 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 2.3e-43
Identity = 91/114 (79.82%), Postives = 100/114 (87.72%), Query Frame = 0


Query: 1    MEIVGNMHNYDFGILQHLPSLKQITLVEDELSNNSVTQIPQQLQHLTALEFLSIKNFGGI 60
            M IVGN+ NYDFGILQHLPSLK+ITLVE +LSNNSV QIPQQLQHLT+LEFLSI+NFGGI
Sbjct: 933  MTIVGNIQNYDFGILQHLPSLKKITLVEGKLSNNSVKQIPQQLQHLTSLEFLSIENFGGI 992

Query: 61   EALPEWLGNFVCLQTLGLSNCKKLKKLPSTGAILRLTKLKKLYAYKCPQLLLDE 115
            EALPEWLGN VCLQTL    C+ LKKLPST A+LRLTKL KLYA +CP LLL+E
Sbjct: 993  EALPEWLGNLVCLQTLCFLCCRNLKKLPSTEAMLRLTKLNKLYACECPMLLLEE 1046

[Close]

BLAST of CsaV3_2G036050 vs. TrEMBL
Match: tr|A0A1S3C9H9|A0A1S3C9H9_CUCME (putative disease resistance protein RGA3 OS=Cucumis melo OX=3656 GN=LOC103498352 PE=3 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 2.3e-43
Identity = 91/114 (79.82%), Postives = 100/114 (87.72%), Query Frame = 0


Query: 1    MEIVGNMHNYDFGILQHLPSLKQITLVEDELSNNSVTQIPQQLQHLTALEFLSIKNFGGI 60
            M IVGN+ NYDFGILQHLPSLK+ITLVE +LSNNSV QIPQQLQHLT+LEFLSI+NFGGI
Sbjct: 933  MTIVGNIQNYDFGILQHLPSLKKITLVEGKLSNNSVKQIPQQLQHLTSLEFLSIENFGGI 992

Query: 61   EALPEWLGNFVCLQTLGLSNCKKLKKLPSTGAILRLTKLKKLYAYKCPQLLLDE 115
            EALPEWLGN VCLQTL    C+ LKKLPST A+LRLTKL KLYA +CP LLL+E
Sbjct: 993  EALPEWLGNLVCLQTLCFLCCRNLKKLPSTEAMLRLTKLNKLYACECPMLLLEE 1046

The following BLAST results are available for this feature:

BLAST of CsaV3_2G036050 vs. NCBI nr


Match Name	E-value	Identity	Description
AAT77098.1	6.8e-47	87.50	Fom-2 protein, partial [Cucumis melo]	[more]
AAT77094.1	3.7e-45	82.46	Fom-2 protein, partial [Cucumis melo] >AAT77095.1 Fom-2 protein, partial [Cucumi...	[more]
ABB91438.1	3.7e-45	82.46	R-FOM-2 [Cucumis melo]	[more]
AAS80152.1	3.5e-43	79.82	FOM-2 [Cucumis melo]	[more]
AAT77097.1	3.5e-43	79.82	Fom-2 protein, partial [Cucumis melo]	[more]

BLAST of CsaV3_2G036050 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G72840.2	2.3e-04	36.99	Disease resistance protein (TIR-NBS-LRR class)	[more]
AT5G45060.1	2.3e-04	29.11	Disease resistance protein (TIR-NBS-LRR class) family	[more]

BLAST of CsaV3_2G036050 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_2G036050 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|Q694W1\|Q694W1_CUCME	4.5e-47	87.50	Fom-2 protein (Fragment) OS=Cucumis melo OX=3656 GN=Fom-2 PE=4 SV=1	[more]
tr\|Q694W4\|Q694W4_CUCME	2.5e-45	82.46	Fom-2 protein (Fragment) OS=Cucumis melo OX=3656 GN=Fom-2 PE=4 SV=1	[more]
tr\|Q2V727\|Q2V727_CUCME	2.5e-45	82.46	R-FOM-2 OS=Cucumis melo OX=3656 PE=3 SV=1	[more]
tr\|Q6E436\|Q6E436_CUCME	2.3e-43	79.82	FOM-2 OS=Cucumis melo OX=3656 GN=Fom-2 PE=3 SV=1	[more]
tr\|A0A1S3C9H9\|A0A1S3C9H9_CUCME	2.3e-43	79.82	putative disease resistance protein RGA3 OS=Cucumis melo OX=3656 GN=LOC103498352...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR032675	LRR_dom_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_2G036050.1	CsaV3_2G036050.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR032675	Leucine-rich repeat domain superfamily	GENE3D	G3DSA:3.80.10.10		coord: 6..113 e-value: 2.9E-20 score: 74.0
None	No IPR available	PANTHER	PTHR43930	FAMILY NOT NAMED	coord: 17..110
None	No IPR available	SUPERFAMILY	SSF52047	RNI-like	coord: 15..109

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_2G036050	Cla97C02G034340	Watermelon (97103) v2	cucwmbB125
CsaV3_2G036050	Bhi10G001242	Wax gourd	cucwgoB180

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_2G036050	Silver-seed gourd	carcucB1100
CsaV3_2G036050	Cucumber (Gy14) v2	cgybcucB065
CsaV3_2G036050	Cucumber (Gy14) v1	cgycucB401
CsaV3_2G036050	Cucurbita maxima (Rimu)	cmacucB0653
CsaV3_2G036050	Cucurbita maxima (Rimu)	cmacucB0703
CsaV3_2G036050	Cucurbita moschata (Rifu)	cmocucB0639
CsaV3_2G036050	Cucurbita moschata (Rifu)	cmocucB0689
CsaV3_2G036050	Cucurbita pepo (Zucchini)	cpecucB0337
CsaV3_2G036050	Cucurbita pepo (Zucchini)	cpecucB0881
CsaV3_2G036050	Wild cucumber (PI 183967)	cpicucB081
CsaV3_2G036050	Bottle gourd (USVL1VR-Ls)	cuclsiB105
CsaV3_2G036050	Melon (DHL92) v3.5.1	cucmeB103
CsaV3_2G036050	Melon (DHL92) v3.6.1	cucmedB096
CsaV3_2G036050	Watermelon (Charleston Gray)	cucwcgB138
CsaV3_2G036050	Watermelon (97103) v1	cucwmB156
CsaV3_2G036050	Wax gourd	cucwgoB192