Cla97C02G034340 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C02G034340
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Disease resistance protein
Location	Cla97Chr02 : 8542734 .. 8543165 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATTTGAGGGGAATCCAAATTGTTGGATGCATGCAGAATTATGATCTTAGCATCTTCCAGCACCTTCCTTCCCTTAAAGAACTTTGTTTAGTTGCGGATGAGTCGAGCAGTAGCGTAACACAAATTCCTCAACAACTTCAACTCCTCACTGCCCTGGAATTTCTGGGCATTCAAGATTTTGGAGGCATCGAAGCTTTGCCAGAATGGTTGGGAAACTTTGTATCCTTGCATACACTCAGTCTTTGTAAGTGCAAAAATTTGAAACGACTGCCTTCTACAGAAGCAATGCTACGTCTCACCCAATTAAAGCAATTGTTTGCTTATGAATGTCCGCAGCTACTACTTGGCGAAGGGGACCCAGAGCAGGCAAAACTTTCCCACCTTCCAAAAATTATGGTTCATCTCAATAGTTATCAGAGTCTTTTTTAG

mRNA sequence

ATGAATTTGAGGGGAATCCAAATTGTTGGATGCATGCAGAATTATGATCTTAGCATCTTCCAGCACCTTCCTTCCCTTAAAGAACTTTGTTTAGTTGCGGATGAGTCGAGCAGTAGCGTAACACAAATTCCTCAACAACTTCAACTCCTCACTGCCCTGGAATTTCTGGGCATTCAAGATTTTGGAGGCATCGAAGCTTTGCCAGAATGGTTGGGAAACTTTGTATCCTTGCATACACTCAGTCTTTGTAAGTGCAAAAATTTGAAACGACTGCCTTCTACAGAAGCAATGCTACGTCTCACCCAATTAAAGCAATTGTTTGCTTATGAATGTCCGCAGCTACTACTTGGCGAAGGGGACCCAGAGCAGGCAAAACTTTCCCACCTTCCAAAAATTATGGTTCATCTCAATAGTTATCAGAGTCTTTTTTAG

Coding sequence (CDS)

ATGAATTTGAGGGGAATCCAAATTGTTGGATGCATGCAGAATTATGATCTTAGCATCTTCCAGCACCTTCCTTCCCTTAAAGAACTTTGTTTAGTTGCGGATGAGTCGAGCAGTAGCGTAACACAAATTCCTCAACAACTTCAACTCCTCACTGCCCTGGAATTTCTGGGCATTCAAGATTTTGGAGGCATCGAAGCTTTGCCAGAATGGTTGGGAAACTTTGTATCCTTGCATACACTCAGTCTTTGTAAGTGCAAAAATTTGAAACGACTGCCTTCTACAGAAGCAATGCTACGTCTCACCCAATTAAAGCAATTGTTTGCTTATGAATGTCCGCAGCTACTACTTGGCGAAGGGGACCCAGAGCAGGCAAAACTTTCCCACCTTCCAAAAATTATGGTTCATCTCAATAGTTATCAGAGTCTTTTTTAG

Protein sequence

MNLRGIQIVGCMQNYDLSIFQHLPSLKELCLVADESSSSVTQIPQQLQLLTALEFLGIQDFGGIEALPEWLGNFVSLHTLSLCKCKNLKRLPSTEAMLRLTQLKQLFAYECPQLLLGEGDPEQAKLSHLPKIMVHLNSYQSLF

Homology

[Close]

BLAST of Cla97C02G034340 vs. NCBI nr
Match: AAT77098.1 (Fom-2 protein, partial [Cucumis melo])

HSP 1 Score: 197.6 bits (501), Expect = 2.9e-47
Identity = 103/143 (72.03%), Postives = 118/143 (82.52%), Query Frame = 0


Query: 1   MNLRGIQIVGCMQNYDLSIFQHLPSLKELCLVADE-SSSSVTQIPQQLQLLTALEFLGIQ 60
           M LRG++IVG MQNYD  I QHLPSLK++ LV DE S++SVTQIPQQLQ LTALEFL I+
Sbjct: 411 MKLRGMKIVGNMQNYDFGILQHLPSLKQITLVEDELSNNSVTQIPQQLQHLTALEFLSIE 470

Query: 61  DFGGIEALPEWLGNFVSLHTLSLCKCKNLKRLPSTEAMLRLTQLKQLFAYECPQLLLGEG 120
           +FGGIEALPEWLGNFV L TLSL  CKNLK+LPSTEAML LT+L +L A  CPQLLLG G
Sbjct: 471 NFGGIEALPEWLGNFVCLQTLSLFNCKNLKKLPSTEAMLCLTKLNRLDACRCPQLLLGNG 530

Query: 121 DPEQAKLSHLPKIMVHLNSYQSL 143
           D E AKLSHLP+I ++ +SY SL
Sbjct: 531 DMEGAKLSHLPQISIYRDSYVSL 553

[Close]

BLAST of Cla97C02G034340 vs. NCBI nr
Match: AAT77094.1 (Fom-2 protein, partial [Cucumis melo] >AAT77095.1 Fom-2 protein, partial [Cucumis melo] >AAT77096.1 Fom-2 protein, partial [Cucumis melo])

HSP 1 Score: 190.7 bits (483), Expect = 3.5e-45
Identity = 95/142 (66.90%), Postives = 115/142 (80.99%), Query Frame = 0


Query: 1   MNLRGIQIVGCMQNYDLSIFQHLPSLKELCLVADE-SSSSVTQIPQQLQLLTALEFLGIQ 60
           MNL  + IVG +QNYD  I QHLPSLK++ LV DE S++SVTQIPQQLQ LT+LEFL I+
Sbjct: 388 MNLGVMTIVGNIQNYDFGILQHLPSLKKITLVEDELSNNSVTQIPQQLQHLTSLEFLSIE 447

Query: 61  DFGGIEALPEWLGNFVSLHTLSLCKCKNLKRLPSTEAMLRLTQLKQLFAYECPQLLLGEG 120
           +FGGIEALPEWLGN V L TL    C+NLK+LPSTEAMLRLT+L +L+A ECP LLL EG
Sbjct: 448 NFGGIEALPEWLGNLVCLQTLCFLCCRNLKKLPSTEAMLRLTKLNKLYACECPMLLLEEG 507

Query: 121 DPEQAKLSHLPKIMVHLNSYQS 142
           DPE+AKLSH P ++ H N+++S
Sbjct: 508 DPERAKLSHFPNVLAHRNTFES 529

[Close]

BLAST of Cla97C02G034340 vs. NCBI nr
Match: ABB91438.1 (R-FOM-2 [Cucumis melo])

HSP 1 Score: 190.7 bits (483), Expect = 3.5e-45
Identity = 95/142 (66.90%), Postives = 115/142 (80.99%), Query Frame = 0


Query: 1    MNLRGIQIVGCMQNYDLSIFQHLPSLKELCLVADE-SSSSVTQIPQQLQLLTALEFLGIQ 60
            MNL  + IVG +QNYD  I QHLPSLK++ LV DE S++SVTQIPQQLQ LT+LEFL I+
Sbjct: 928  MNLGVMTIVGNIQNYDFGILQHLPSLKKITLVEDELSNNSVTQIPQQLQHLTSLEFLSIE 987

Query: 61   DFGGIEALPEWLGNFVSLHTLSLCKCKNLKRLPSTEAMLRLTQLKQLFAYECPQLLLGEG 120
            +FGGIEALPEWLGN V L TL    C+NLK+LPSTEAMLRLT+L +L+A ECP LLL EG
Sbjct: 988  NFGGIEALPEWLGNLVCLQTLCFLCCRNLKKLPSTEAMLRLTKLNKLYACECPMLLLEEG 1047

Query: 121  DPEQAKLSHLPKIMVHLNSYQS 142
            DPE+AKLSH P ++ H N+++S
Sbjct: 1048 DPERAKLSHFPNVLAHRNTFES 1069

[Close]

BLAST of Cla97C02G034340 vs. NCBI nr
Match: AAS80152.1 (FOM-2 [Cucumis melo])

HSP 1 Score: 184.1 bits (466), Expect = 3.3e-43
Identity = 92/142 (64.79%), Postives = 113/142 (79.58%), Query Frame = 0


Query: 1    MNLRGIQIVGCMQNYDLSIFQHLPSLKELCLVADE-SSSSVTQIPQQLQLLTALEFLGIQ 60
            MNL  + IVG +QNYD  I QHLPSLK++ LV  + S++SV QIPQQLQ LT+LEFL I+
Sbjct: 928  MNLGVMTIVGNIQNYDFGILQHLPSLKKITLVEGKLSNNSVKQIPQQLQHLTSLEFLSIE 987

Query: 61   DFGGIEALPEWLGNFVSLHTLSLCKCKNLKRLPSTEAMLRLTQLKQLFAYECPQLLLGEG 120
            +FGGIEALPEWLGN V L TL    C+NLK+LPSTEAMLRLT+L +L+A ECP LLL EG
Sbjct: 988  NFGGIEALPEWLGNLVCLQTLCFLCCRNLKKLPSTEAMLRLTKLNKLYACECPMLLLEEG 1047

Query: 121  DPEQAKLSHLPKIMVHLNSYQS 142
            DPE+AKLSH P ++ H N+++S
Sbjct: 1048 DPERAKLSHFPNVLAHRNTFES 1069

[Close]

BLAST of Cla97C02G034340 vs. NCBI nr
Match: AAT77097.1 (Fom-2 protein, partial [Cucumis melo])

HSP 1 Score: 184.1 bits (466), Expect = 3.3e-43
Identity = 92/142 (64.79%), Postives = 113/142 (79.58%), Query Frame = 0


Query: 1   MNLRGIQIVGCMQNYDLSIFQHLPSLKELCLVADE-SSSSVTQIPQQLQLLTALEFLGIQ 60
           MNL  + IVG +QNYD  I QHLPSLK++ LV  + S++SV QIPQQLQ LT+LEFL I+
Sbjct: 388 MNLGVMTIVGNIQNYDFGILQHLPSLKKITLVEGKLSNNSVKQIPQQLQHLTSLEFLSIE 447

Query: 61  DFGGIEALPEWLGNFVSLHTLSLCKCKNLKRLPSTEAMLRLTQLKQLFAYECPQLLLGEG 120
           +FGGIEALPEWLGN V L TL    C+NLK+LPSTEAMLRLT+L +L+A ECP LLL EG
Sbjct: 448 NFGGIEALPEWLGNLVCLQTLCFLCCRNLKKLPSTEAMLRLTKLNKLYACECPMLLLEEG 507

Query: 121 DPEQAKLSHLPKIMVHLNSYQS 142
           DPE+AKLSH P ++ H N+++S
Sbjct: 508 DPERAKLSHFPNVLAHRNTFES 529

[Close]

BLAST of Cla97C02G034340 vs. TrEMBL
Match: tr|Q694W1|Q694W1_CUCME (Fom-2 protein (Fragment) OS=Cucumis melo OX=3656 GN=Fom-2 PE=4 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 1.9e-47
Identity = 103/143 (72.03%), Postives = 118/143 (82.52%), Query Frame = 0


Query: 1   MNLRGIQIVGCMQNYDLSIFQHLPSLKELCLVADE-SSSSVTQIPQQLQLLTALEFLGIQ 60
           M LRG++IVG MQNYD  I QHLPSLK++ LV DE S++SVTQIPQQLQ LTALEFL I+
Sbjct: 411 MKLRGMKIVGNMQNYDFGILQHLPSLKQITLVEDELSNNSVTQIPQQLQHLTALEFLSIE 470

Query: 61  DFGGIEALPEWLGNFVSLHTLSLCKCKNLKRLPSTEAMLRLTQLKQLFAYECPQLLLGEG 120
           +FGGIEALPEWLGNFV L TLSL  CKNLK+LPSTEAML LT+L +L A  CPQLLLG G
Sbjct: 471 NFGGIEALPEWLGNFVCLQTLSLFNCKNLKKLPSTEAMLCLTKLNRLDACRCPQLLLGNG 530

Query: 121 DPEQAKLSHLPKIMVHLNSYQSL 143
           D E AKLSHLP+I ++ +SY SL
Sbjct: 531 DMEGAKLSHLPQISIYRDSYVSL 553

[Close]

BLAST of Cla97C02G034340 vs. TrEMBL
Match: tr|Q694W4|Q694W4_CUCME (Fom-2 protein (Fragment) OS=Cucumis melo OX=3656 GN=Fom-2 PE=4 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 2.3e-45
Identity = 95/142 (66.90%), Postives = 115/142 (80.99%), Query Frame = 0


Query: 1   MNLRGIQIVGCMQNYDLSIFQHLPSLKELCLVADE-SSSSVTQIPQQLQLLTALEFLGIQ 60
           MNL  + IVG +QNYD  I QHLPSLK++ LV DE S++SVTQIPQQLQ LT+LEFL I+
Sbjct: 388 MNLGVMTIVGNIQNYDFGILQHLPSLKKITLVEDELSNNSVTQIPQQLQHLTSLEFLSIE 447

Query: 61  DFGGIEALPEWLGNFVSLHTLSLCKCKNLKRLPSTEAMLRLTQLKQLFAYECPQLLLGEG 120
           +FGGIEALPEWLGN V L TL    C+NLK+LPSTEAMLRLT+L +L+A ECP LLL EG
Sbjct: 448 NFGGIEALPEWLGNLVCLQTLCFLCCRNLKKLPSTEAMLRLTKLNKLYACECPMLLLEEG 507

Query: 121 DPEQAKLSHLPKIMVHLNSYQS 142
           DPE+AKLSH P ++ H N+++S
Sbjct: 508 DPERAKLSHFPNVLAHRNTFES 529

[Close]

BLAST of Cla97C02G034340 vs. TrEMBL
Match: tr|Q2V727|Q2V727_CUCME (R-FOM-2 OS=Cucumis melo OX=3656 PE=3 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 2.3e-45
Identity = 95/142 (66.90%), Postives = 115/142 (80.99%), Query Frame = 0


Query: 1    MNLRGIQIVGCMQNYDLSIFQHLPSLKELCLVADE-SSSSVTQIPQQLQLLTALEFLGIQ 60
            MNL  + IVG +QNYD  I QHLPSLK++ LV DE S++SVTQIPQQLQ LT+LEFL I+
Sbjct: 928  MNLGVMTIVGNIQNYDFGILQHLPSLKKITLVEDELSNNSVTQIPQQLQHLTSLEFLSIE 987

Query: 61   DFGGIEALPEWLGNFVSLHTLSLCKCKNLKRLPSTEAMLRLTQLKQLFAYECPQLLLGEG 120
            +FGGIEALPEWLGN V L TL    C+NLK+LPSTEAMLRLT+L +L+A ECP LLL EG
Sbjct: 988  NFGGIEALPEWLGNLVCLQTLCFLCCRNLKKLPSTEAMLRLTKLNKLYACECPMLLLEEG 1047

Query: 121  DPEQAKLSHLPKIMVHLNSYQS 142
            DPE+AKLSH P ++ H N+++S
Sbjct: 1048 DPERAKLSHFPNVLAHRNTFES 1069

[Close]

BLAST of Cla97C02G034340 vs. TrEMBL
Match: tr|Q6E436|Q6E436_CUCME (FOM-2 OS=Cucumis melo OX=3656 GN=Fom-2 PE=3 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 2.2e-43
Identity = 92/142 (64.79%), Postives = 113/142 (79.58%), Query Frame = 0


Query: 1    MNLRGIQIVGCMQNYDLSIFQHLPSLKELCLVADE-SSSSVTQIPQQLQLLTALEFLGIQ 60
            MNL  + IVG +QNYD  I QHLPSLK++ LV  + S++SV QIPQQLQ LT+LEFL I+
Sbjct: 928  MNLGVMTIVGNIQNYDFGILQHLPSLKKITLVEGKLSNNSVKQIPQQLQHLTSLEFLSIE 987

Query: 61   DFGGIEALPEWLGNFVSLHTLSLCKCKNLKRLPSTEAMLRLTQLKQLFAYECPQLLLGEG 120
            +FGGIEALPEWLGN V L TL    C+NLK+LPSTEAMLRLT+L +L+A ECP LLL EG
Sbjct: 988  NFGGIEALPEWLGNLVCLQTLCFLCCRNLKKLPSTEAMLRLTKLNKLYACECPMLLLEEG 1047

Query: 121  DPEQAKLSHLPKIMVHLNSYQS 142
            DPE+AKLSH P ++ H N+++S
Sbjct: 1048 DPERAKLSHFPNVLAHRNTFES 1069

[Close]

BLAST of Cla97C02G034340 vs. TrEMBL
Match: tr|A0A1S3C9H9|A0A1S3C9H9_CUCME (putative disease resistance protein RGA3 OS=Cucumis melo OX=3656 GN=LOC103498352 PE=3 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 2.2e-43
Identity = 92/142 (64.79%), Postives = 113/142 (79.58%), Query Frame = 0


Query: 1    MNLRGIQIVGCMQNYDLSIFQHLPSLKELCLVADE-SSSSVTQIPQQLQLLTALEFLGIQ 60
            MNL  + IVG +QNYD  I QHLPSLK++ LV  + S++SV QIPQQLQ LT+LEFL I+
Sbjct: 928  MNLGVMTIVGNIQNYDFGILQHLPSLKKITLVEGKLSNNSVKQIPQQLQHLTSLEFLSIE 987

Query: 61   DFGGIEALPEWLGNFVSLHTLSLCKCKNLKRLPSTEAMLRLTQLKQLFAYECPQLLLGEG 120
            +FGGIEALPEWLGN V L TL    C+NLK+LPSTEAMLRLT+L +L+A ECP LLL EG
Sbjct: 988  NFGGIEALPEWLGNLVCLQTLCFLCCRNLKKLPSTEAMLRLTKLNKLYACECPMLLLEEG 1047

Query: 121  DPEQAKLSHLPKIMVHLNSYQS 142
            DPE+AKLSH P ++ H N+++S
Sbjct: 1048 DPERAKLSHFPNVLAHRNTFES 1069

[Close]

BLAST of Cla97C02G034340 vs. TAIR10
Match: AT1G72840.2 (Disease resistance protein (TIR-NBS-LRR class))

HSP 1 Score: 40.8 bits (94), Expect = 8.2e-04
Identity = 39/114 (34.21%), Postives = 55/114 (48.25%), Query Frame = 0


Query: 14  NYDLSIFQHLPSLKELCLVADESSSSVTQIPQ---QLQLLTALEFLGIQDFGGIEALPEW 73
           N+    F   P L EL L+    + ++  IP+   QLQLL  L+ LG  DF     LP  
Sbjct: 784 NFSCLSFADFPCLTELKLI----NLNIEDIPEDICQLQLLETLD-LGGNDF---VYLPTS 843

Query: 74  LGNFVSLHTLSLCKCKNLKRLPSTEAMLRLTQLKQLFAYECPQL-----LLGEG 120
           +G    L  LSL  C+ LK LP      +L+Q+++L    C +L     +LG G
Sbjct: 844 MGQLAMLKYLSLSNCRRLKALP------QLSQVERLVLSGCVKLGSLMGILGAG 883

The following BLAST results are available for this feature:

BLAST of Cla97C02G034340 vs. NCBI nr


Match Name	E-value	Identity	Description
AAT77098.1	2.9e-47	72.03	Fom-2 protein, partial [Cucumis melo]	[more]
AAT77094.1	3.5e-45	66.90	Fom-2 protein, partial [Cucumis melo] >AAT77095.1 Fom-2 protein, partial [Cucumi...	[more]
ABB91438.1	3.5e-45	66.90	R-FOM-2 [Cucumis melo]	[more]
AAS80152.1	3.3e-43	64.79	FOM-2 [Cucumis melo]	[more]
AAT77097.1	3.3e-43	64.79	Fom-2 protein, partial [Cucumis melo]	[more]

BLAST of Cla97C02G034340 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|Q694W1\|Q694W1_CUCME	1.9e-47	72.03	Fom-2 protein (Fragment) OS=Cucumis melo OX=3656 GN=Fom-2 PE=4 SV=1	[more]
tr\|Q694W4\|Q694W4_CUCME	2.3e-45	66.90	Fom-2 protein (Fragment) OS=Cucumis melo OX=3656 GN=Fom-2 PE=4 SV=1	[more]
tr\|Q2V727\|Q2V727_CUCME	2.3e-45	66.90	R-FOM-2 OS=Cucumis melo OX=3656 PE=3 SV=1	[more]
tr\|Q6E436\|Q6E436_CUCME	2.2e-43	64.79	FOM-2 OS=Cucumis melo OX=3656 GN=Fom-2 PE=3 SV=1	[more]
tr\|A0A1S3C9H9\|A0A1S3C9H9_CUCME	2.2e-43	64.79	putative disease resistance protein RGA3 OS=Cucumis melo OX=3656 GN=LOC103498352...	[more]

BLAST of Cla97C02G034340 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C02G034340 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G72840.2	8.2e-04	34.21	Disease resistance protein (TIR-NBS-LRR class)	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR032675	LRR_dom_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0043531	ADP binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C02G034340.1	Cla97C02G034340.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR032675	Leucine-rich repeat domain superfamily	GENE3D	G3DSA:3.80.10.10		coord: 2..142 e-value: 1.0E-16 score: 62.4
None	No IPR available	PANTHER	PTHR23155	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	coord: 4..136
None	No IPR available	PANTHER	PTHR23155:SF871	SUBFAMILY NOT NAMED	coord: 4..136
None	No IPR available	SUPERFAMILY	SSF52058	L domain-like	coord: 4..133

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C02G034340	CsaV3_2G036050	Cucumber (Chinese Long) v3	cucwmbB125
Cla97C02G034340	Bhi10G001242	Wax gourd	wgowmbB370

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C02G034340	Silver-seed gourd	carwmbB1111
Cla97C02G034340	Cucumber (Gy14) v2	cgybwmbB116
Cla97C02G034340	Cucumber (Gy14) v1	cgywmbB459
Cla97C02G034340	Cucurbita maxima (Rimu)	cmawmbB571
Cla97C02G034340	Cucurbita maxima (Rimu)	cmawmbB617
Cla97C02G034340	Cucurbita moschata (Rifu)	cmowmbB547
Cla97C02G034340	Cucurbita moschata (Rifu)	cmowmbB591
Cla97C02G034340	Wild cucumber (PI 183967)	cpiwmbB121
Cla97C02G034340	Cucumber (Chinese Long) v2	cuwmbB119
Cla97C02G034340	Bottle gourd (USVL1VR-Ls)	lsiwmbB054
Cla97C02G034340	Melon (DHL92) v3.6.1	medwmbB087
Cla97C02G034340	Melon (DHL92) v3.5.1	mewmbB092
Cla97C02G034340	Watermelon (Charleston Gray)	wcgwmbB138
Cla97C02G034340	Watermelon (97103) v1	wmwmbB326