CsaV3_2G035780 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_2G035780
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	RNA-directed DNA polymerase
Location	chr2 : 23994749 .. 23995618 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGAGACGATCAGGGAGAAGAGAGATGGCTTGCTGTGCGAATTGGACCTTTCACATGTCGGTGTTTGACGTCACTACAGTGTGCTCCAAGACTCCCTTGGTCGTCGACGTTGGTTATGCTTTTGTGGCCGAAACGAAATCTAATAGGTAATATCAATTTTCTATATGCATTTAATTTCTCTTTTCTATTTTCTTCAATTTTTCAAAAGGGAACTCATAAATAATTTTTGGCATGCTATGAAGAAAGCATTTTGCTATGTTGAAGAAGATTGTTTTTTTTTTTTTTTTTTGTCTAGGGTCATCTTCCCAATGTGAATCTATATTTTTTCTCCATGGTTGGCTGTGTGATGAAGTAATTTGGTCACTTACAATGTGTTTGATGAAGTTCTTTAGTGAAGCATTTGGTTGATTTTTGTTTGCTCGAATTAGGAAAATAGTCTAGGAAGATTCCATGGCTATGGGAGGAAGCTTTGAGAAAAAGAGAATGAAAAATTAATTATGAGATTTTTAACTTTGATGTTGATATAAGTTGGGATGAGTTTAAAGGGGCATTCTTTGATAGTTTTATCTGCACTCTTTCCATGATGAAAAACGAAGTGAGTTCTTGAAGCTCACTCAGAGTTCAATGACTGTTGTTGAATATGAGAAGAAGTATACAAAATTGTCTAAGTACGCCACCAGTTTGATTGAGGATGAGGCTAAAAGGTGCAAGCGATTTGAAGAGGGATTACGAGAGAAAATCCGTACTCCCATGAGTAGGATAGATTTGGACATAAGCTTAAATGCAGAACCAACACTATATATAAGATGTACCTATTATACATGTACTAATTCAAAGAAGATATACTCAAGTGCAAGAGCCTCATGA

mRNA sequence

ATGTCGAGACGATCAGGGAGAAGAGAGATGGCTTGCTGTGCGAATTGGACCTTTCACATGTCGGTGTTTGACGTCACTACAGTGTGCTCCAAGACTCCCTTGGTCGTCGACGTTGGTTATGCTTTTGTGGCCGAAACGAAATCTAATAGTGAGTTCTTGAAGCTCACTCAGAGTTCAATGACTGTTGTTGAATATGAGAAGAAGTATACAAAATTGTCTAAGTACGCCACCAGTTTGATTGAGGATGAGGCTAAAAGGTGCAAGCGATTTGAAGAGGGATTACGAGAGAAAATCCGTACTCCCATGAGTAGGATAGATTTGGACATAAGCTTAAATGCAGAACCAACACTATATATAAGATGTACCTATTATACATGTACTAATTCAAAGAAGATATACTCAAGTGCAAGAGCCTCATGA

Coding sequence (CDS)

ATGTCGAGACGATCAGGGAGAAGAGAGATGGCTTGCTGTGCGAATTGGACCTTTCACATGTCGGTGTTTGACGTCACTACAGTGTGCTCCAAGACTCCCTTGGTCGTCGACGTTGGTTATGCTTTTGTGGCCGAAACGAAATCTAATAGTGAGTTCTTGAAGCTCACTCAGAGTTCAATGACTGTTGTTGAATATGAGAAGAAGTATACAAAATTGTCTAAGTACGCCACCAGTTTGATTGAGGATGAGGCTAAAAGGTGCAAGCGATTTGAAGAGGGATTACGAGAGAAAATCCGTACTCCCATGAGTAGGATAGATTTGGACATAAGCTTAAATGCAGAACCAACACTATATATAAGATGTACCTATTATACATGTACTAATTCAAAGAAGATATACTCAAGTGCAAGAGCCTCATGA

Protein sequence

MSRRSGRREMACCANWTFHMSVFDVTTVCSKTPLVVDVGYAFVAETKSNSEFLKLTQSSMTVVEYEKKYTKLSKYATSLIEDEAKRCKRFEEGLREKIRTPMSRIDLDISLNAEPTLYIRCTYYTCTNSKKIYSSARAS

Homology

[Close]

BLAST of CsaV3_2G035780 vs. NCBI nr
Match: KGN63332.1 (hypothetical protein Csa_2G429045 [Cucumis sativus])

HSP 1 Score: 159.5 bits (402), Expect = 8.5e-36
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0


Query: 60  MTVVEYEKKYTKLSKYATSLIEDEAKRCKRFEEGLREKIRTPMSRIDLDISLNAEPTLYI 119
           MTVVEYEKKYTKLSKYATSLIEDEAKRCKRFEEGLREKIRTPMSRIDLDISLNAEPTLYI
Sbjct: 1   MTVVEYEKKYTKLSKYATSLIEDEAKRCKRFEEGLREKIRTPMSRIDLDISLNAEPTLYI 60

Query: 120 RCTYYTCTNSKKIYSSARAS 140
           RCTYYTCTNSKKIYSSARAS
Sbjct: 61  RCTYYTCTNSKKIYSSARAS 80

[Close]

BLAST of CsaV3_2G035780 vs. NCBI nr
Match: XP_011654404.1 (PREDICTED: uncharacterized protein LOC105435385 [Cucumis sativus])

HSP 1 Score: 72.4 bits (176), Expect = 1.4e-09
Identity = 43/97 (44.33%), Postives = 59/97 (60.82%), Query Frame = 0


Query: 60  MTVVEYEKKYTKLSKYATSLIEDEAKRCKRFEEGLREKIRTPMSRI--------DLDISL 119
           M V EYEKKYTKLSKYATS+IEDE +RCK+FEEGLRE+IRT ++           ++ +L
Sbjct: 1   MIVAEYEKKYTKLSKYATSVIEDEIERCKQFEEGLREEIRTLVTACADWVDFSKSMEAAL 60

Query: 120 NAEPTLYIR----------CTYYTCTNSKKIYSSARA 139
             E ++Y R          CT Y   +SK +  + ++
Sbjct: 61  RVEKSVYERKREREASKNVCTVYIKQSSKLLRGNLKS 97

[Close]

BLAST of CsaV3_2G035780 vs. NCBI nr
Match: XP_008464978.1 (PREDICTED: uncharacterized protein LOC103502718 [Cucumis melo])

HSP 1 Score: 69.7 bits (169), Expect = 8.9e-09
Identity = 33/55 (60.00%), Postives = 45/55 (81.82%), Query Frame = 0


Query: 51  EFLKLTQSSMTVVEYEKKYTKLSKYATSLIEDEAKRCKRFEEGLREKIRTPMSRI 106
           EFL+L Q S++VVEYE+KYT+LS+YA  ++  E+ RC+RFE GLR +IRTPM+ I
Sbjct: 47  EFLELKQGSLSVVEYERKYTELSRYAEMIVASESDRCRRFERGLRFEIRTPMTAI 101

[Close]

BLAST of CsaV3_2G035780 vs. NCBI nr
Match: XP_024036987.1 (uncharacterized protein LOC112096967 [Citrus clementina])

HSP 1 Score: 66.2 bits (160), Expect = 9.8e-08
Identity = 33/54 (61.11%), Postives = 43/54 (79.63%), Query Frame = 0


Query: 50  SEFLKLTQSSMTVVEYEKKYTKLSKYATSLIEDEAKRCKRFEEGLREKIRTPMS 104
           SEFL+L Q SM+V EYEKK+  LS++A S + DE +RCKRFEEGLR +IRT ++
Sbjct: 110 SEFLRLVQGSMSVEEYEKKFLDLSRFAISAVGDERERCKRFEEGLRFEIRTTVT 163

[Close]

BLAST of CsaV3_2G035780 vs. NCBI nr
Match: XP_024036981.1 (uncharacterized protein LOC112096963 [Citrus clementina])

HSP 1 Score: 65.5 bits (158), Expect = 1.7e-07
Identity = 32/64 (50.00%), Postives = 47/64 (73.44%), Query Frame = 0


Query: 40  YAFVAETKSNSEFLKLTQSSMTVVEYEKKYTKLSKYATSLIEDEAKRCKRFEEGLREKIR 99
           +  V +    SEF +L Q S+TV EYEKK+  LS++ATS++ DE +RC+RFE+GLR +IR
Sbjct: 170 FPVVYQDIKRSEFFRLVQGSLTVEEYEKKFLDLSRFATSVVGDERERCRRFEDGLRFEIR 229

Query: 100 TPMS 104
           T ++
Sbjct: 230 TTVT 233

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BLAST of CsaV3_2G035780 vs. TrEMBL
Match: tr|A0A0A0LR88|A0A0A0LR88_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G429045 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 5.6e-36
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0


Query: 60  MTVVEYEKKYTKLSKYATSLIEDEAKRCKRFEEGLREKIRTPMSRIDLDISLNAEPTLYI 119
           MTVVEYEKKYTKLSKYATSLIEDEAKRCKRFEEGLREKIRTPMSRIDLDISLNAEPTLYI
Sbjct: 1   MTVVEYEKKYTKLSKYATSLIEDEAKRCKRFEEGLREKIRTPMSRIDLDISLNAEPTLYI 60

Query: 120 RCTYYTCTNSKKIYSSARAS 140
           RCTYYTCTNSKKIYSSARAS
Sbjct: 61  RCTYYTCTNSKKIYSSARAS 80

[Close]

BLAST of CsaV3_2G035780 vs. TrEMBL
Match: tr|A0A1S3CMU0|A0A1S3CMU0_CUCME (uncharacterized protein LOC103502718 OS=Cucumis melo OX=3656 GN=LOC103502718 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 5.9e-09
Identity = 33/55 (60.00%), Postives = 45/55 (81.82%), Query Frame = 0


Query: 51  EFLKLTQSSMTVVEYEKKYTKLSKYATSLIEDEAKRCKRFEEGLREKIRTPMSRI 106
           EFL+L Q S++VVEYE+KYT+LS+YA  ++  E+ RC+RFE GLR +IRTPM+ I
Sbjct: 47  EFLELKQGSLSVVEYERKYTELSRYAEMIVASESDRCRRFERGLRFEIRTPMTAI 101

[Close]

BLAST of CsaV3_2G035780 vs. TrEMBL
Match: tr|A0A0A0KPI9|A0A0A0KPI9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G034500 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 3.2e-07
Identity = 31/44 (70.45%), Postives = 38/44 (86.36%), Query Frame = 0


Query: 60  MTVVEYEKKYTKLSKYATSLIEDEAKRCKRFEEGLREKIRTPMS 104
           MT+ EYEKKY KL ++ATS+IEDEAK CKR EEGLRE+IRT ++
Sbjct: 1   MTIAEYEKKYKKLYEHATSVIEDEAKDCKRVEEGLREEIRTSVT 44

[Close]

BLAST of CsaV3_2G035780 vs. TrEMBL
Match: tr|A0A1S4DV40|A0A1S4DV40_CUCME (uncharacterized protein LOC103487680 OS=Cucumis melo OX=3656 GN=LOC103487680 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 4.2e-07
Identity = 29/55 (52.73%), Postives = 42/55 (76.36%), Query Frame = 0


Query: 51  EFLKLTQSSMTVVEYEKKYTKLSKYATSLIEDEAKRCKRFEEGLREKIRTPMSRI 106
           EF++L Q S+ V EYE+KYT+LS+Y   ++  E+ RC+RFE GLR +IRTP++ I
Sbjct: 161 EFMELKQGSLLVAEYERKYTELSRYVEMIVASESDRCRRFERGLRFEIRTPVTAI 215

[Close]

BLAST of CsaV3_2G035780 vs. TrEMBL
Match: tr|A0A1S3C3Q7|A0A1S3C3Q7_CUCME (uncharacterized protein LOC103496653 OS=Cucumis melo OX=3656 GN=LOC103496653 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 9.4e-07
Identity = 30/55 (54.55%), Postives = 43/55 (78.18%), Query Frame = 0


Query: 51  EFLKLTQSSMTVVEYEKKYTKLSKYATSLIEDEAKRCKRFEEGLREKIRTPMSRI 106
           EFL+L Q S++V EYE KYT+LS+YA  ++  E++RC+RFE GLR +IRT ++ I
Sbjct: 99  EFLELKQGSLSVAEYEMKYTELSRYAEMIVASESERCRRFERGLRFEIRTLVTTI 153

The following BLAST results are available for this feature:

BLAST of CsaV3_2G035780 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN63332.1	8.5e-36	100.00	hypothetical protein Csa_2G429045 [Cucumis sativus]	[more]
XP_011654404.1	1.4e-09	44.33	PREDICTED: uncharacterized protein LOC105435385 [Cucumis sativus]	[more]
XP_008464978.1	8.9e-09	60.00	PREDICTED: uncharacterized protein LOC103502718 [Cucumis melo]	[more]
XP_024036987.1	9.8e-08	61.11	uncharacterized protein LOC112096967 [Citrus clementina]	[more]
XP_024036981.1	1.7e-07	50.00	uncharacterized protein LOC112096963 [Citrus clementina]	[more]

BLAST of CsaV3_2G035780 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_2G035780 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_2G035780 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LR88\|A0A0A0LR88_CUCSA	5.6e-36	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G429045 PE=4 SV=1	[more]
tr\|A0A1S3CMU0\|A0A1S3CMU0_CUCME	5.9e-09	60.00	uncharacterized protein LOC103502718 OS=Cucumis melo OX=3656 GN=LOC103502718 PE=...	[more]
tr\|A0A0A0KPI9\|A0A0A0KPI9_CUCSA	3.2e-07	70.45	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G034500 PE=4 SV=1	[more]
tr\|A0A1S4DV40\|A0A1S4DV40_CUCME	4.2e-07	52.73	uncharacterized protein LOC103487680 OS=Cucumis melo OX=3656 GN=LOC103487680 PE=...	[more]
tr\|A0A1S3C3Q7\|A0A1S3C3Q7_CUCME	9.4e-07	54.55	uncharacterized protein LOC103496653 OS=Cucumis melo OX=3656 GN=LOC103496653 PE=...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_2G035780.1	CsaV3_2G035780.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_2G035780	CSPI02G27190	Wild cucumber (PI 183967)	cpicucB081

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_2G035780	Silver-seed gourd	carcucB0997
CsaV3_2G035780	Cucumber (Gy14) v2	cgybcucB065
CsaV3_2G035780	Cucumber (Gy14) v1	cgycucB069
CsaV3_2G035780	Cucurbita maxima (Rimu)	cmacucB0653
CsaV3_2G035780	Cucurbita maxima (Rimu)	cmacucB0703
CsaV3_2G035780	Cucurbita moschata (Rifu)	cmocucB0639
CsaV3_2G035780	Cucurbita moschata (Rifu)	cmocucB0689
CsaV3_2G035780	Cucurbita pepo (Zucchini)	cpecucB0337
CsaV3_2G035780	Cucurbita pepo (Zucchini)	cpecucB0881
CsaV3_2G035780	Bottle gourd (USVL1VR-Ls)	cuclsiB105
CsaV3_2G035780	Melon (DHL92) v3.5.1	cucmeB103
CsaV3_2G035780	Melon (DHL92) v3.6.1	cucmedB096
CsaV3_2G035780	Watermelon (Charleston Gray)	cucwcgB138
CsaV3_2G035780	Watermelon (97103) v1	cucwmB156
CsaV3_2G035780	Watermelon (97103) v2	cucwmbB125
CsaV3_2G035780	Wax gourd	cucwgoB180