CsaV3_2G034330 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_2G034330
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	CYC02 protein-like isoform X1
Location	chr2 : 22732622 .. 22733940 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AACAATACCAACTCATCAACATATATACAAAATACATATACAAAACAATGAACTCCAAGGCTGTTGTGTTTGCGTGTCTGTTGTTGTTAGTCTCAGCTGTCGTTGCTATTGCTGCTGAAGGAAATCAAGAGCAACGTCAGAATGCTAAAGGTATATATTCTTTATTGTTTTTGTAATTTGTATCAATAATAATCAACTACCATGTATTGAAAGTCACCGTGATAAATCAATTGCACCAAAATTCAAGAGTTTGATCTAAATATTTCTTTTTAGAATTTCAAATATGATCATTTATATTTACAATAAACTCTATTGGTCATAATAGACCCAAAAATTTAATGGAAATTGTGTTATATATATATATATATATATTTGTTTTGCTACTAACTCTTTTAGTAAAAAAAATTAAAGGTTATTTTTGAAATTTTACAACGAATCTTAAGCACATAAAACTATCTCTTATTAAGGCTTATAGATCAGAAAAAATTTAAAAACACATAAAAAAAATAGTATTTAGGGGTTTTTTTTGGAAGAAAAGACGGACTACTTGGCCTTGGTAAACAAACCAAAATAACCAAATTGAATTTTGTGTTCTTTTTTAAAAATTTCCCTAGTATTTATTAGGTTAATTTTTAAGACAATGATTACATAAAAAGTTATGATAAAGTTCCAAAAATTTGAAAATATATATAAAGAAGTTTTGTAGACGAATAATTATTATGCATTACACTTCATATATTGATAAAAAGGGTAATGAAGACACAGGTGCAAATGATAAAACTGGAGTAGAAGAGTCAAAGCTACACTGCTACCATGGATGTTGCAGATATTATGGGCATGAATGCGCAAAATGCTGCAGAAATCTTGCAGAAGCACAGGCTGCTGCCGCGGGTGCTAATAATGCTGCGACAGAAGAGAGTGAAATGGAAGTAAGGCCACAGGGATGGGGAGGTCACGGTGGATGGGGAGGTCACGGCGGTTGGGGCGGACACAGAGGTGGATGGGGCGGACATAGAGGTGGGGGTGGAGGTGGAGGTGGATGGGGTAGAGGTGGAGGTGGGAAGTGAGTGGGAGAAGGAAAACTTGTGATGTGTGTGTTAAGTAATGTTATAGAGAATAAGGGTAGAAGGGAAGGAAAATAATGAATAATGAATTAATGGAGTTAGAATAGAAGGGTTAGATCCCTTCACCAATATTTCACTATATCGCACCACTACTTTTATCATTGTCGACCACTCTTTGTATGTGAAATATAAAAACGTATGTCTTTAGTTTACGTTACGCCTCATGTTTTCTCCCTCCTCTAACTTTGATAGGCC

mRNA sequence

ATGAACTCCAAGGCTGTTGTGTTTGCGTGTCTGTTGTTGTTAGTCTCAGCTGTCGTTGCTATTGCTGCTGAAGGAAATCAAGAGCAACGTCAGAATGCTAAAGACACAGGTGCAAATGATAAAACTGGAGTAGAAGAGTCAAAGCTACACTGCTACCATGGATGTTGCAGATATTATGGGCATGAATGCGCAAAATGCTGCAGAAATCTTGCAGAAGCACAGGCTGCTGCCGCGGGTGCTAATAATGCTGCGACAGAAGAGAGTGAAATGGAAGTAAGGCCACAGGGATGGGGAGGTCACGGTGGATGGGGAGGTCACGGCGGTTGGGGCGGACACAGAGGTGGATGGGGCGGACATAGAGGTGGGGGTGGAGGTGGAGGTGGATGGGGTAGAGGTGGAGGTGGGAAGTGA

Coding sequence (CDS)

ATGAACTCCAAGGCTGTTGTGTTTGCGTGTCTGTTGTTGTTAGTCTCAGCTGTCGTTGCTATTGCTGCTGAAGGAAATCAAGAGCAACGTCAGAATGCTAAAGACACAGGTGCAAATGATAAAACTGGAGTAGAAGAGTCAAAGCTACACTGCTACCATGGATGTTGCAGATATTATGGGCATGAATGCGCAAAATGCTGCAGAAATCTTGCAGAAGCACAGGCTGCTGCCGCGGGTGCTAATAATGCTGCGACAGAAGAGAGTGAAATGGAAGTAAGGCCACAGGGATGGGGAGGTCACGGTGGATGGGGAGGTCACGGCGGTTGGGGCGGACACAGAGGTGGATGGGGCGGACATAGAGGTGGGGGTGGAGGTGGAGGTGGATGGGGTAGAGGTGGAGGTGGGAAGTGA

Protein sequence

MNSKAVVFACLLLLVSAVVAIAAEGNQEQRQNAKDTGANDKTGVEESKLHCYHGCCRYYGHECAKCCRNLAEAQAAAAGANNAATEESEMEVRPQGWGGHGGWGGHGGWGGHRGGWGGHRGGGGGGGGWGRGGGGK

Homology

[Close]

BLAST of CsaV3_2G034330 vs. NCBI nr
Match: KGN63189.1 (hypothetical protein Csa_2G408350 [Cucumis sativus])

HSP 1 Score: 143.7 bits (361), Expect = 4.7e-31
Identity = 66/71 (92.96%), Postives = 69/71 (97.18%), Query Frame = 0


Query: 30  RQNAKDTGANDKTGVEESKLHCYHGCCRYYGHECAKCCRNLAEAQAAAAGANNAATEESE 89
           ++  +DTGANDKTGVEESKLHCYHGCCRYYGHECAKCCRNLAEAQAAAAGANNAATEESE
Sbjct: 9   KKGNEDTGANDKTGVEESKLHCYHGCCRYYGHECAKCCRNLAEAQAAAAGANNAATEESE 68

Query: 90  MEVRPQGWGGH 101
           MEVRPQGWGGH
Sbjct: 69  MEVRPQGWGGH 79

[Close]

BLAST of CsaV3_2G034330 vs. NCBI nr
Match: XP_016901862.1 (PREDICTED: CYC02 protein-like isoform X1 [Cucumis melo])

HSP 1 Score: 142.5 bits (358), Expect = 1.1e-30
Identity = 72/100 (72.00%), Postives = 78/100 (78.00%), Query Frame = 0


Query: 1   MNSKAVVFACLLLLVSAVVAIAAEGNQEQRQNAKDTGANDKTGVEESKLHCYHGCCRYYG 60
           MNSKAVVFACLLLLVSAVVAIAAEGNQEQ Q+AK TG NDK GVEESK+ CYHGCCRYYG
Sbjct: 1   MNSKAVVFACLLLLVSAVVAIAAEGNQEQPQSAKATGVNDKRGVEESKMRCYHGCCRYYG 60

Query: 61  HECAKCCRNLAEAQAAAAGANNAATEESEMEVRPQGWGGH 101
           H+C +CC +LAEAQ A             +EV PQGWGGH
Sbjct: 61  HDCVRCCGSLAEAQDAXXXXXXXXXXXXXVEVTPQGWGGH 100

[Close]

BLAST of CsaV3_2G034330 vs. NCBI nr
Match: XP_008455979.1 (PREDICTED: BPTI/Kunitz domain-containing protein 2-like isoform X2 [Cucumis melo])

HSP 1 Score: 136.3 bits (342), Expect = 7.6e-29
Identity = 71/100 (71.00%), Postives = 77/100 (77.00%), Query Frame = 0


Query: 1   MNSKAVVFACLLLLVSAVVAIAAEGNQEQRQNAKDTGANDKTGVEESKLHCYHGCCRYYG 60
           MNSKAVVFACLLLLVSAVVAIAAEGNQEQ Q+AK  G NDK GVEESK+ CYHGCCRYYG
Sbjct: 1   MNSKAVVFACLLLLVSAVVAIAAEGNQEQPQSAK--GVNDKRGVEESKMRCYHGCCRYYG 60

Query: 61  HECAKCCRNLAEAQAAAAGANNAATEESEMEVRPQGWGGH 101
           H+C +CC +LAEAQ A             +EV PQGWGGH
Sbjct: 61  HDCVRCCGSLAEAQDAXXXXXXXXXXXXXVEVTPQGWGGH 98

[Close]

BLAST of CsaV3_2G034330 vs. NCBI nr
Match: XP_022140567.1 (late embryogenesis abundant protein M17-like isoform X1 [Momordica charantia])

HSP 1 Score: 72.0 bits (175), Expect = 1.8e-09
Identity = 43/99 (43.43%), Postives = 55/99 (55.56%), Query Frame = 0


Query: 1  MNSKAVVFACLLLLVSAVVAIA-AEGNQEQRQNAKDTGANDKTGVEESKLHCYHGCCRYY 60
          M SKAV F CLL + + V+A A +EG QEQ     +    ++  VEESK  C +GCCR+ 
Sbjct: 1  MRSKAVAFVCLLFISTVVIASAVSEGTQEQ----NEVEVENENPVEESKQRCRYGCCRFD 60

Query: 61 GHECAKCCRNLAEAQAAAAGANNAATEESEMEVRPQGWG 99
          G  C +CCR  AE +A     N    EESE+E    G G
Sbjct: 61 GRRCVRCCRGPAEEEATIQNQNENTVEESEVETNGFGKG 95

[Close]

BLAST of CsaV3_2G034330 vs. NCBI nr
Match: XP_022986401.1 (CYC02 protein-like [Cucurbita maxima])

HSP 1 Score: 55.5 bits (132), Expect = 1.7e-04
Identity = 24/35 (68.57%), Postives = 27/35 (77.14%), Query Frame = 0


Query: 37 GANDKTGVEESKLHCYHGCCRYYGHECAKCCRNLA 72
          GAN  T VEESKLHCYHGCC+ YG+ C KCC + A
Sbjct: 39 GANANT-VEESKLHCYHGCCKRYGYRCVKCCGSAA 72

[Close]

BLAST of CsaV3_2G034330 vs. TrEMBL
Match: tr|A0A0A0LQ85|A0A0A0LQ85_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G408350 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 3.1e-31
Identity = 66/71 (92.96%), Postives = 69/71 (97.18%), Query Frame = 0


Query: 30  RQNAKDTGANDKTGVEESKLHCYHGCCRYYGHECAKCCRNLAEAQAAAAGANNAATEESE 89
           ++  +DTGANDKTGVEESKLHCYHGCCRYYGHECAKCCRNLAEAQAAAAGANNAATEESE
Sbjct: 9   KKGNEDTGANDKTGVEESKLHCYHGCCRYYGHECAKCCRNLAEAQAAAAGANNAATEESE 68

Query: 90  MEVRPQGWGGH 101
           MEVRPQGWGGH
Sbjct: 69  MEVRPQGWGGH 79

[Close]

BLAST of CsaV3_2G034330 vs. TrEMBL
Match: tr|A0A1S4E0U4|A0A1S4E0U4_CUCME (CYC02 protein-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103496043 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 7.0e-31
Identity = 72/100 (72.00%), Postives = 78/100 (78.00%), Query Frame = 0


Query: 1   MNSKAVVFACLLLLVSAVVAIAAEGNQEQRQNAKDTGANDKTGVEESKLHCYHGCCRYYG 60
           MNSKAVVFACLLLLVSAVVAIAAEGNQEQ Q+AK TG NDK GVEESK+ CYHGCCRYYG
Sbjct: 1   MNSKAVVFACLLLLVSAVVAIAAEGNQEQPQSAKATGVNDKRGVEESKMRCYHGCCRYYG 60

Query: 61  HECAKCCRNLAEAQAAAAGANNAATEESEMEVRPQGWGGH 101
           H+C +CC +LAEAQ A             +EV PQGWGGH
Sbjct: 61  HDCVRCCGSLAEAQDAXXXXXXXXXXXXXVEVTPQGWGGH 100

[Close]

BLAST of CsaV3_2G034330 vs. TrEMBL
Match: tr|A0A1S3C295|A0A1S3C295_CUCME (BPTI/Kunitz domain-containing protein 2-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103496043 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 5.0e-29
Identity = 71/100 (71.00%), Postives = 77/100 (77.00%), Query Frame = 0


Query: 1   MNSKAVVFACLLLLVSAVVAIAAEGNQEQRQNAKDTGANDKTGVEESKLHCYHGCCRYYG 60
           MNSKAVVFACLLLLVSAVVAIAAEGNQEQ Q+AK  G NDK GVEESK+ CYHGCCRYYG
Sbjct: 1   MNSKAVVFACLLLLVSAVVAIAAEGNQEQPQSAK--GVNDKRGVEESKMRCYHGCCRYYG 60

Query: 61  HECAKCCRNLAEAQAAAAGANNAATEESEMEVRPQGWGGH 101
           H+C +CC +LAEAQ A             +EV PQGWGGH
Sbjct: 61  HDCVRCCGSLAEAQDAXXXXXXXXXXXXXVEVTPQGWGGH 98

The following BLAST results are available for this feature:

BLAST of CsaV3_2G034330 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN63189.1	4.7e-31	92.96	hypothetical protein Csa_2G408350 [Cucumis sativus]	[more]
XP_016901862.1	1.1e-30	72.00	PREDICTED: CYC02 protein-like isoform X1 [Cucumis melo]	[more]
XP_008455979.1	7.6e-29	71.00	PREDICTED: BPTI/Kunitz domain-containing protein 2-like isoform X2 [Cucumis melo...	[more]
XP_022140567.1	1.8e-09	43.43	late embryogenesis abundant protein M17-like isoform X1 [Momordica charantia]	[more]
XP_022986401.1	1.7e-04	68.57	CYC02 protein-like [Cucurbita maxima]	[more]

BLAST of CsaV3_2G034330 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_2G034330 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_2G034330 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LQ85\|A0A0A0LQ85_CUCSA	3.1e-31	92.96	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G408350 PE=4 SV=1	[more]
tr\|A0A1S4E0U4\|A0A1S4E0U4_CUCME	7.0e-31	72.00	CYC02 protein-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103496043 PE=4 SV=1	[more]
tr\|A0A1S3C295\|A0A1S3C295_CUCME	5.0e-29	71.00	BPTI/Kunitz domain-containing protein 2-like isoform X2 OS=Cucumis melo OX=3656 ...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_2G034330.1	CsaV3_2G034330.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 78..136

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_2G034330	CSPI02G25810	Wild cucumber (PI 183967)	cpicucB081
CsaV3_2G034330	CmaCh20G005640	Cucurbita maxima (Rimu)	cmacucB0650
CsaV3_2G034330	Cp4.1LG16g04110	Cucurbita pepo (Zucchini)	cpecucB0336
CsaV3_2G034330	CsGy2G025440	Cucumber (Gy14) v2	cgybcucB065
CsaV3_2G034330	ClCG02G009650	Watermelon (Charleston Gray)	cucwcgB136
CsaV3_2G034330	Lsi10G000700	Bottle gourd (USVL1VR-Ls)	cuclsiB105

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_2G034330	Wax gourd	cucwgoB180
CsaV3_2G034330	Wax gourd	cucwgoB158
CsaV3_2G034330	Cucumber (Chinese Long) v3	cuccucB099
CsaV3_2G034330	Silver-seed gourd	carcucB0844
CsaV3_2G034330	Cucumber (Gy14) v2	cgybcucB316
CsaV3_2G034330	Cucumber (Gy14) v1	cgycucB092
CsaV3_2G034330	Cucurbita maxima (Rimu)	cmacucB0606
CsaV3_2G034330	Cucurbita maxima (Rimu)	cmacucB0702
CsaV3_2G034330	Cucurbita moschata (Rifu)	cmocucB0114
CsaV3_2G034330	Cucurbita moschata (Rifu)	cmocucB0592
CsaV3_2G034330	Cucurbita moschata (Rifu)	cmocucB0640
CsaV3_2G034330	Cucurbita moschata (Rifu)	cmocucB0688
CsaV3_2G034330	Cucurbita pepo (Zucchini)	cpecucB0290
CsaV3_2G034330	Cucurbita pepo (Zucchini)	cpecucB0828
CsaV3_2G034330	Cucurbita pepo (Zucchini)	cpecucB0880
CsaV3_2G034330	Wild cucumber (PI 183967)	cpicucB385
CsaV3_2G034330	Bottle gourd (USVL1VR-Ls)	cuclsiB110
CsaV3_2G034330	Melon (DHL92) v3.5.1	cucmeB103
CsaV3_2G034330	Melon (DHL92) v3.5.1	cucmeB107
CsaV3_2G034330	Melon (DHL92) v3.6.1	cucmedB096
CsaV3_2G034330	Melon (DHL92) v3.6.1	cucmedB100
CsaV3_2G034330	Watermelon (Charleston Gray)	cucwcgB141
CsaV3_2G034330	Watermelon (97103) v1	cucwmB158
CsaV3_2G034330	Watermelon (97103) v1	cucwmB165
CsaV3_2G034330	Watermelon (97103) v2	cucwmbB122
CsaV3_2G034330	Watermelon (97103) v2	cucwmbB127