CmaCh20G005640 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh20G005640
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr20 : 2725162 .. 2726107 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCAACCAAAACATTCATAACATATCCATCCCTGTTTCCCACCATATAAATACACCCCCATCTTGTTCCAAGATTACACCATCTTTTCTTTTTCTTTCGGAACTGAAGAATACAATGAAGTCCAAAGCTGTTGTGGTTGCGTGTCTGTTGCTGTTCTTGTTGGTCTCTATCTCTGTTTCTGCGTCGGCAGTGTCCGAAGGAAGCCAACAGCAGCCTGACAAAGCTGAAGGTATTGTAATTAATTGCGCCAATAATGATCAAATAAATTTAAATCTATAAGTATTATTGATAATTGGTTGTTGGGTTGTGAATTAATTAACGTAGGAGCAAATGCAAATACCGTGGAAGAGTCAAAGCTACACTGCTACCACGGATGCTGCAAACGGTATGGGTATCGCTGCGTGAAATGCTGCGGTAGCGCTGCAGAAGCGCAGGCCAATACCAATGCCAACACCAATGGTGAGGCGCATCAGGAGCGTGCAGAAGTCGAAGCAGCCGCGCATAGATGGGGAGGCCACGGCGGATGGCGAGGTGGAGGCGGACATAGAGGCGGACGGGGCGGCGGTGGAGGTGGGAAGTGATTAGTGTGTGTGTGTGTGTAAGTGTGGTGGTACAAAGAATAAGGTAGGAGGGAAGGAAAATGAATAAATAATTAAGAATGAAGGGTCATAGTGCCCTACAATAGAAGGGTTAGATCCCTTCACTGCTACGCTACTCTTACATGTGAAATATATATATATATATATATTATGTCTTTCGTGTTACACATTGCTAGATCTACTAGATTTACTAGCCGTGGATTTAAACGATTACCAACAGTATTAGAGTTTCGAGTTAGAAACTGTGTTTCAACCATCAAAGGACCCCAGAATAAACGGTTACCAACTGTGTTTCCATTTTTAAAAGTTTTTATATGAATATTATGTTAAGGATGAAAGTCTCACGGG

mRNA sequence

TCAACCAAAACATTCATAACATATCCATCCCTGTTTCCCACCATATAAATACACCCCCATCTTGTTCCAAGATTACACCATCTTTTCTTTTTCTTTCGGAACTGAAGAATACAATGAAGTCCAAAGCTGTTGTGGTTGCGTGTCTGTTGCTGTTCTTGTTGGTCTCTATCTCTGTTTCTGCGTCGGCAGTGTCCGAAGGAAGCCAACAGCAGCCTGACAAAGCTGAAGGAGCAAATGCAAATACCGTGGAAGAGTCAAAGCTACACTGCTACCACGGATGCTGCAAACGGTATGGGTATCGCTGCGTGAAATGCTGCGGTAGCGCTGCAGAAGCGCAGGCCAATACCAATGCCAACACCAATGGTGAGGCGCATCAGGAGCGTGCAGAAGTCGAAGCAGCCGCGCATAGATGGGGAGGCCACGGCGGATGGCGAGGTGGAGGCGGACATAGAGGCGGACGGGGCGGCGGTGGAGGTGGGAAGTGATTAGTGTGTGTGTGTGTGTAAGTGTGGTGGTACAAAGAATAAGGTAGGAGGGAAGGAAAATGAATAAATAATTAAGAATGAAGGGTCATAGTGCCCTACAATAGAAGGGTTAGATCCCTTCACTGCTACGCTACTCTTACATGTGAAATATATATATATATATATATTATGTCTTTCGTGTTACACATTGCTAGATCTACTAGATTTACTAGCCGTGGATTTAAACGATTACCAACAGTATTAGAGTTTCGAGTTAGAAACTGTGTTTCAACCATCAAAGGACCCCAGAATAAACGGTTACCAACTGTGTTTCCATTTTTAAAAGTTTTTATATGAATATTATGTTAAGGATGAAAGTCTCACGGG

Coding sequence (CDS)

ATGAAGTCCAAAGCTGTTGTGGTTGCGTGTCTGTTGCTGTTCTTGTTGGTCTCTATCTCTGTTTCTGCGTCGGCAGTGTCCGAAGGAAGCCAACAGCAGCCTGACAAAGCTGAAGGAGCAAATGCAAATACCGTGGAAGAGTCAAAGCTACACTGCTACCACGGATGCTGCAAACGGTATGGGTATCGCTGCGTGAAATGCTGCGGTAGCGCTGCAGAAGCGCAGGCCAATACCAATGCCAACACCAATGGTGAGGCGCATCAGGAGCGTGCAGAAGTCGAAGCAGCCGCGCATAGATGGGGAGGCCACGGCGGATGGCGAGGTGGAGGCGGACATAGAGGCGGACGGGGCGGCGGTGGAGGTGGGAAGTGA

Protein sequence

MKSKAVVVACLLLFLLVSISVSASAVSEGSQQQPDKAEGANANTVEESKLHCYHGCCKRYGYRCVKCCGSAAEAQANTNANTNGEAHQERAEVEAAAHRWGGHGGWRGGGGHRGGRGGGGGGK
Homology
[Close]
BLAST of CmaCh20G005640 vs. TrEMBL
Match: A0A0A0LQ85_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G408350 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 6.0e-12
Identity = 54/94 (57.45%), Postives = 59/94 (62.77%), Query Frame = 1 

Query: 39  GANANT-VEESKLHCYHGCCKRYGYRCVKCCGSAAEAQANTNANTNGEAHQERAEVEAAA 98
           GAN  T VEESKLHCYHGCC+ YG+ C KCC + AEAQA      N  A  E +E+E   
Sbjct: 16  GANDKTGVEESKLHCYHGCCRYYGHECAKCCRNLAEAQAAAAGANN--AATEESEMEVRP 75

Query: 99  HRWGGHGGW---------RGG-GGHRGGRGGGGG 122
             WGGHGGW         RGG GGHRGG GGGGG
Sbjct: 76  QGWGGHGGWGGHGGWGGHRGGWGGHRGGGGGGGG 107

[Close]
BLAST of CmaCh20G005640 vs. NCBI nr
Match: gi|659111928|ref|XP_008455979.1| (PREDICTED: BPTI/Kunitz domain-containing protein 2-like [Cucumis melo])

HSP 1 Score: 99.0 bits (245), Expect = 6.2e-18
Identity = 70/129 (54.26%), Postives = 84/129 (65.12%), Query Frame = 1 

Query: 1   MKSKAVVVACLLLFLLVSISVSASAVSEGSQQQPDKAEGANANT-VEESKLHCYHGCCKR 60
           M SKAVV ACLLL +   ++++A    EG+Q+QP  A+G N    VEESK+ CYHGCC+ 
Sbjct: 1   MNSKAVVFACLLLLVSAVVAIAA----EGNQEQPQSAKGVNDKRGVEESKMRCYHGCCRY 60

Query: 61  YGYRCVKCCGSAAEAQANTNANTNGEAHQERAEVEAAAHRWGGHGGWRG------GGGHR 120
           YG+ CV+CCGS AEAQ +  A  N  A +E  EVE     WGGHGGW G      GGG R
Sbjct: 61  YGHDCVRCCGSLAEAQ-DAAAAANAAAEEEN-EVEVTPQGWGGHGGWGGGGRSGWGGGGR 120

Query: 121 GGRGGGGGG 123
           GGRGGGG G
Sbjct: 121 GGRGGGGRG 123

[Close]
BLAST of CmaCh20G005640 vs. NCBI nr
Match: gi|700208070|gb|KGN63189.1| (hypothetical protein Csa_2G408350 [Cucumis sativus])

HSP 1 Score: 78.6 bits (192), Expect = 8.7e-12
Identity = 54/94 (57.45%), Postives = 59/94 (62.77%), Query Frame = 1 

Query: 39  GANANT-VEESKLHCYHGCCKRYGYRCVKCCGSAAEAQANTNANTNGEAHQERAEVEAAA 98
           GAN  T VEESKLHCYHGCC+ YG+ C KCC + AEAQA      N  A  E +E+E   
Sbjct: 16  GANDKTGVEESKLHCYHGCCRYYGHECAKCCRNLAEAQAAAAGANN--AATEESEMEVRP 75

Query: 99  HRWGGHGGW---------RGG-GGHRGGRGGGGG 122
             WGGHGGW         RGG GGHRGG GGGGG
Sbjct: 76  QGWGGHGGWGGHGGWGGHRGGWGGHRGGGGGGGG 107

The following BLAST results are available for this feature:
BLAST of CmaCh20G005640 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh20G005640 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LQ85_CUCSA6.0e-1257.45Uncharacterized protein OS=Cucumis sativus GN=Csa_2G408350 PE=4 SV=1[more]
BLAST of CmaCh20G005640 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh20G005640 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659111928|ref|XP_008455979.1|6.2e-1854.26PREDICTED: BPTI/Kunitz domain-containing protein 2-like [Cucumis melo][more]
gi|700208070|gb|KGN63189.1|8.7e-1257.45hypothetical protein Csa_2G408350 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh20G005640.1CmaCh20G005640.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh20G005640CSPI02G25810Wild cucumber (PI 183967)cmacpiB545
CmaCh20G005640Lsi10G000700Bottle gourd (USVL1VR-Ls)cmalsiB501
CmaCh20G005640Cp4.1LG16g04110Cucurbita pepo (Zucchini)cmacpeB562
CmaCh20G005640CsaV3_2G034330Cucumber (Chinese Long) v3cmacucB0650
CmaCh20G005640CsGy2G025440Cucumber (Gy14) v2cgybcmaB217
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None