CsaV3_2G028490 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_2G028490
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr2 : 18734376 .. 18735825 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTGGGTTCCACAGCCACTGCTTTGGCTATAAATACCACTCACCCCTGCTTTTCGGATTACAGGTTGCGATCAAGCAAAGGAAAACGGAAGACTTTCTGCGACTCGCCTCTTCTGCTCTCTGGTCGACGATCTTCACGGTTAGAGTTTTCTGATCCGCACCCATTTAATGGATGATTGTATTATTGCCTACTATTCTCTGGATTCTTTACTTGGTCTTCTGATATTGCTTGATTTTTCGTTGCATTTCGTGTTTGGATGGTGATGATTGAAGGATCGGGGGAAAGGAAGAGTTTATTTCTCGTAGATGAGTGGGGGGTTTGTTTTCTTTTTACCTGTAAGACCGAAATTACGTAATGGTTGTGTGGGTGAGATCGTCGATCGAGTAATTTGCTGATGATTCTTGAACGATGGAGTGAACGTAAGAGTTTATTTCTTGTAGTTGAGTGATGGGATTGTTTTTTTTTTTTTTTTCTGCCTTTAAGATCGAAATTACGATATGTTTATGTGGGTGAGATCGTTGATTGAGTAATTTGCTGATGATTTTTTAACGATTGAGTGAAAGGAAGAGTTTATTTCTTGTAGTTGAATGATGGGTTTGTTTCCTTTCTGCCTGTATGATCGAGATTATGTAATGTTTATGTGGATGATATCATTGATCGGCTAATTCGTTGATGAGTTTTGAACGATACTTGATTTGGGTTTTATGTATGAACTGTTACCATATCCTGGTTTTCCGGTTGGTTAATACGGGATTGAATTATCCAGTACGAAGGGTGTTGGGTTTTTCTGGTTTTCTTGTGAAATTTTCTGTTATACTGAGTTGTGGCATGAAGGCGTTGGTCTTCATGTCGTCATCCACCTTCATCAAGTGTTGGATCTTGGATAGGAACGTTGATATCAGTTATGTGTTATTTTTCTCATCTTGGAGCTTATTGCAGCGGTTTTGTAAAATTGACAGAGTGATATTTGGATTTTGTTTCTCTTTCTTTTATTTATTTCTTTATTGAGGAGTCAATATATGTCTTTTGGATTTGAATTTGGAGAGTGAAATTCAGTGTTCCTAATACTTAGTATCAGTTCAGTGACTTAATGTTGCTAAAAAGCTTCTATGTTTCTATTTAGATCATTCTCTTTTCTTTCCTAATTTTCCATTTTTGTCTATGATTTAAATCACGTTTTTTTCATGAATAGATGTGCCAAACTTGTATGGAGTTGCATACCAGTGTCTTGATCATTTGTGCATCATCATTTGGTTATTTTTTTTTTGTGTAAACTCATATTCAATTCAATATTGGATTAATTTGCTTCGAAGTTTACTTTTGTTTCTCTTTATGATAGTCTTCTGGAGCAGCTCTAGACAAAATTAGACCAGATTTTTGTCATCTCCTTGGTATCGGTTACCATGAGTCCTTCACCAGTCCCCTCTCTGGCTATGCATATGCTTGA

mRNA sequence

ATGGTTGGGTTCCACAGCCACTGCTTTGGCTATAAATACCACTCACCCCTGCTTTTCGGATTACAGGTTGCGATCAAGCAAAGGAAAACGGAAGACTTTCTGCGACTCGCCTCTTCTGCTCTCTGGTCGACGATCTTCACGTCTTCTGGAGCAGCTCTAGACAAAATTAGACCAGATTTTTGTCATCTCCTTGGTATCGGTTACCATGAGTCCTTCACCAGTCCCCTCTCTGGCTATGCATATGCTTGA

Coding sequence (CDS)

ATGGTTGGGTTCCACAGCCACTGCTTTGGCTATAAATACCACTCACCCCTGCTTTTCGGATTACAGGTTGCGATCAAGCAAAGGAAAACGGAAGACTTTCTGCGACTCGCCTCTTCTGCTCTCTGGTCGACGATCTTCACGTCTTCTGGAGCAGCTCTAGACAAAATTAGACCAGATTTTTGTCATCTCCTTGGTATCGGTTACCATGAGTCCTTCACCAGTCCCCTCTCTGGCTATGCATATGCTTGA

Protein sequence

MVGFHSHCFGYKYHSPLLFGLQVAIKQRKTEDFLRLASSALWSTIFTSSGAALDKIRPDFCHLLGIGYHESFTSPLSGYAYA
Homology
[Close]
BLAST of CsaV3_2G028490 vs. NCBI nr
Match: KGN62577.1 (hypothetical protein Csa_2G361430 [Cucumis sativus])

HSP 1 Score: 175.6 bits (444), Expect = 6.8e-41
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0 

Query: 1  MVGFHSHCFGYKYHSPLLFGLQVAIKQRKTEDFLRLASSALWSTIFTSSGAALDKIRPDF 60
          MVGFHSHCFGYKYHSPLLFGLQVAIKQRKTEDFLRLASSALWSTIFTSSGAALDKIRPDF
Sbjct: 1  MVGFHSHCFGYKYHSPLLFGLQVAIKQRKTEDFLRLASSALWSTIFTSSGAALDKIRPDF 60

Query: 61 CHLLGIGYHESFTSPLSGYAYA 83
          CHLLGIGYHESFTSPLSGYAYA
Sbjct: 61 CHLLGIGYHESFTSPLSGYAYA 82

[Close]
BLAST of CsaV3_2G028490 vs. TrEMBL
Match: tr|A0A0A0LP88|A0A0A0LP88_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G361430 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 4.5e-41
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0 

Query: 1  MVGFHSHCFGYKYHSPLLFGLQVAIKQRKTEDFLRLASSALWSTIFTSSGAALDKIRPDF 60
          MVGFHSHCFGYKYHSPLLFGLQVAIKQRKTEDFLRLASSALWSTIFTSSGAALDKIRPDF
Sbjct: 1  MVGFHSHCFGYKYHSPLLFGLQVAIKQRKTEDFLRLASSALWSTIFTSSGAALDKIRPDF 60

Query: 61 CHLLGIGYHESFTSPLSGYAYA 83
          CHLLGIGYHESFTSPLSGYAYA
Sbjct: 61 CHLLGIGYHESFTSPLSGYAYA 82

The following BLAST results are available for this feature:
BLAST of CsaV3_2G028490 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN62577.16.8e-41100.00hypothetical protein Csa_2G361430 [Cucumis sativus][more]
BLAST of CsaV3_2G028490 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G028490 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G028490 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LP88|A0A0A0LP88_CUCSA4.5e-41100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G361430 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_2G028490.1CsaV3_2G028490.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_2G028490CSPI02G19800Wild cucumber (PI 183967)cpicucB081
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_2G028490Cucumber (Chinese Long) v3cuccucB068
CsaV3_2G028490Silver-seed gourdcarcucB0119
CsaV3_2G028490Silver-seed gourdcarcucB0209
CsaV3_2G028490Silver-seed gourdcarcucB0988
CsaV3_2G028490Silver-seed gourdcarcucB1017
CsaV3_2G028490Cucumber (Gy14) v2cgybcucB065
CsaV3_2G028490Cucumber (Gy14) v2cgybcucB110
CsaV3_2G028490Cucumber (Gy14) v1cgycucB347
CsaV3_2G028490Cucumber (Gy14) v1cgycucB521
CsaV3_2G028490Cucurbita maxima (Rimu)cmacucB0015
CsaV3_2G028490Cucurbita maxima (Rimu)cmacucB0203
CsaV3_2G028490Cucurbita maxima (Rimu)cmacucB0524
CsaV3_2G028490Cucurbita maxima (Rimu)cmacucB0926
CsaV3_2G028490Cucurbita moschata (Rifu)cmocucB0004
CsaV3_2G028490Cucurbita moschata (Rifu)cmocucB0186
CsaV3_2G028490Cucurbita moschata (Rifu)cmocucB0510
CsaV3_2G028490Cucurbita moschata (Rifu)cmocucB0918
CsaV3_2G028490Cucurbita pepo (Zucchini)cpecucB0106
CsaV3_2G028490Cucurbita pepo (Zucchini)cpecucB0675
CsaV3_2G028490Cucurbita pepo (Zucchini)cpecucB1013
CsaV3_2G028490Wild cucumber (PI 183967)cpicucB135
CsaV3_2G028490Bottle gourd (USVL1VR-Ls)cuclsiB130
CsaV3_2G028490Bottle gourd (USVL1VR-Ls)cuclsiB155
CsaV3_2G028490Melon (DHL92) v3.5.1cucmeB124
CsaV3_2G028490Melon (DHL92) v3.6.1cucmedB118
CsaV3_2G028490Watermelon (Charleston Gray)cucwcgB150
CsaV3_2G028490Watermelon (Charleston Gray)cucwcgB176
CsaV3_2G028490Watermelon (97103) v1cucwmB124
CsaV3_2G028490Watermelon (97103) v1cucwmB138
CsaV3_2G028490Watermelon (97103) v1cucwmB164
CsaV3_2G028490Watermelon (97103) v2cucwmbB137
CsaV3_2G028490Watermelon (97103) v2cucwmbB164
CsaV3_2G028490Wax gourdcucwgoB169