CSPI02G19800 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI02G19800
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr2 : 17801283 .. 17802732 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTGGGTTCCACAGCCACTTCTTTGGCTATAAATACCACTCACCCCCGCTTTTCGGATTACAGGTTGCGATCAAGCAAAGGAAAACGGAAGACTTTCTGCGACTCGCCTCTTCTGCTCTCTGGTCGACGATCTCCACGGTTAGAGTTTTCTGATCCGCACCCATTTAATGGATGATTGTATTATTGCCTACTATTCTCTGGATTCTTTACTTTGTCTTCTGATATTGCTTGATTCTTCGTTGCATTCCGTGTTTGGATGGTGATGATTGAAGGATCGGGGGAAAGGAAGAGTTTATTTCTCGTAGATGAGTGGGGGGTTTGTTTTCTTTTTACCTGTAAGATCGAAATTACGTAATGGTTGTGTGGGTGAGATCGTCGATCGAGTAATTTGCTGATGATTCTTGAACGATGGAGTGAACGTAAGAGTTTATTTCTTGTAGTTGAGTGATGGGATTGTTTTTTTTTTTTTTTCTGCCTTTAAGATCGAAATTACGATATGTTTATGTGGGTGAGATCGTTGATTGAGTAATTTGCTGATGATTTTTTAACGATTGAGTGAAAGGAAGAGTTTATTTCTTGTAGTTGAATGATGGGTTTGTTTCCTTTCTGCCTGTATGATCGAGATTATGTAATGTTTATGTGGATAATATCATTGATCGGCTAATTCGTTGATGAGTTTTGAACGATACTTGATTTGGGTTTTATGTATGAACTGTTACCATATCCAGGTTTTCCGGTTGGTTAATACGGGATTGAATTATCCAGTACGAAGGGTGTTGGGTTTTTCTGGTTTTCTTGTGAAATTTTCTGTTATACTGAGTTGTGGCATGAAGGCGTTGGTCTTCATGTCGTCATCCACCTTCATCAAGTGTTGGATCTTGGATAGGAACGTTGATATCAGTTATGTGTTATTTTTCTCATCTTGGAGCTTATTGCAGCGGTTTTGTAAAATTGACAGAGTGATATTTGGATTTTGTTTCTCTTTCTTTTATTTATTTCTTTATTGAGGAATCAATATATGTCTTTTGGATTTGAATTTGGAGAGTGAAATTCAGTGTTCCTAATACTTAGTATCAGTTCAGTGACTTAATGTTGCTAAAAAGCTTCTATGTTTCTATTTAGATCATTCTCTTTTCTTTCCTAATTTTCCATTTTTGTCTATGATTTAAATCACGTTTTTTTCATGAATAGATGTGCCAAACTTGTATGGAGTTGCATACCAGTGTCTTGATCATTTGTGCATCATCATTTGGTTATTTTTTTTTTTGTGTAAACTCATATTCAATTCAATATTGGATTAATTTGCTTCGAAGTTTACTTTTGTTTCTCTTTATGATAGTCTTCTGGAGCAGCTCTAGACAAAATTAGACCAGATTTTTGTCATCTCCTTGGTATCGGTTACCATGAGTCCTTCACCAGTTCCCTCTCTGGCTATGCATATGCTTGA

mRNA sequence

ATGGTTGGGTTCCACAGCCACTTCTTTGGCTATAAATACCACTCACCCCCGCTTTTCGGATTACAGGTTGCGATCAAGCAAAGGAAAACGGAAGACTTTCTGCGACTCGCCTCTTCTGCTCTCTGGTCGACGATCTCCACGTCTTCTGGAGCAGCTCTAGACAAAATTAGACCAGATTTTTGTCATCTCCTTGGTATCGGTTACCATGAGTCCTTCACCAGTTCCCTCTCTGGCTATGCATATGCTTGA

Coding sequence (CDS)

ATGGTTGGGTTCCACAGCCACTTCTTTGGCTATAAATACCACTCACCCCCGCTTTTCGGATTACAGGTTGCGATCAAGCAAAGGAAAACGGAAGACTTTCTGCGACTCGCCTCTTCTGCTCTCTGGTCGACGATCTCCACGTCTTCTGGAGCAGCTCTAGACAAAATTAGACCAGATTTTTGTCATCTCCTTGGTATCGGTTACCATGAGTCCTTCACCAGTTCCCTCTCTGGCTATGCATATGCTTGA
Homology
[Close]
BLAST of CSPI02G19800 vs. TrEMBL
Match: A0A0A0LP88_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G361430 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 6.2e-37
Identity = 78/82 (95.12%), Postives = 78/82 (95.12%), Query Frame = 1 

Query: 1  MVGFHSHFFGYKYHSPPLFGLQVAIKQRKTEDFLRLASSALWSTISTSSGAALDKIRPDF 60
          MVGFHSH FGYKYHSP LFGLQVAIKQRKTEDFLRLASSALWSTI TSSGAALDKIRPDF
Sbjct: 1  MVGFHSHCFGYKYHSPLLFGLQVAIKQRKTEDFLRLASSALWSTIFTSSGAALDKIRPDF 60

Query: 61 CHLLGIGYHESFTSSLSGYAYA 83
          CHLLGIGYHESFTS LSGYAYA
Sbjct: 61 CHLLGIGYHESFTSPLSGYAYA 82

[Close]
BLAST of CSPI02G19800 vs. NCBI nr
Match: gi|700207458|gb|KGN62577.1| (hypothetical protein Csa_2G361430 [Cucumis sativus])

HSP 1 Score: 161.0 bits (406), Expect = 8.9e-37
Identity = 78/82 (95.12%), Postives = 78/82 (95.12%), Query Frame = 1 

Query: 1  MVGFHSHFFGYKYHSPPLFGLQVAIKQRKTEDFLRLASSALWSTISTSSGAALDKIRPDF 60
          MVGFHSH FGYKYHSP LFGLQVAIKQRKTEDFLRLASSALWSTI TSSGAALDKIRPDF
Sbjct: 1  MVGFHSHCFGYKYHSPLLFGLQVAIKQRKTEDFLRLASSALWSTIFTSSGAALDKIRPDF 60

Query: 61 CHLLGIGYHESFTSSLSGYAYA 83
          CHLLGIGYHESFTS LSGYAYA
Sbjct: 61 CHLLGIGYHESFTSPLSGYAYA 82

The following BLAST results are available for this feature:
BLAST of CSPI02G19800 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI02G19800 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LP88_CUCSA6.2e-3795.12Uncharacterized protein OS=Cucumis sativus GN=Csa_2G361430 PE=4 SV=1[more]
BLAST of CSPI02G19800 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI02G19800 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700207458|gb|KGN62577.1|8.9e-3795.12hypothetical protein Csa_2G361430 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI02G19800.1CSPI02G19800.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI02G19800Csa2G361430Cucumber (Chinese Long) v2cpicuB065
CSPI02G19800CsaV3_2G028490Cucumber (Chinese Long) v3cpicucB081
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI02G19800Cucurbita moschata (Rifu)cmocpiB002
CSPI02G19800Cucurbita moschata (Rifu)cmocpiB160
CSPI02G19800Cucurbita moschata (Rifu)cmocpiB428
CSPI02G19800Cucurbita moschata (Rifu)cmocpiB782
CSPI02G19800Cucumber (Chinese Long) v2cpicuB070
CSPI02G19800Melon (DHL92) v3.5.1cpimeB118
CSPI02G19800Watermelon (Charleston Gray)cpiwcgB136
CSPI02G19800Watermelon (Charleston Gray)cpiwcgB144
CSPI02G19800Watermelon (Charleston Gray)cpiwcgB172
CSPI02G19800Watermelon (97103) v1cpiwmB116
CSPI02G19800Watermelon (97103) v1cpiwmB129
CSPI02G19800Watermelon (97103) v1cpiwmB153
CSPI02G19800Cucurbita pepo (Zucchini)cpecpiB092
CSPI02G19800Cucurbita pepo (Zucchini)cpecpiB541
CSPI02G19800Cucurbita pepo (Zucchini)cpecpiB820
CSPI02G19800Bottle gourd (USVL1VR-Ls)cpilsiB115
CSPI02G19800Bottle gourd (USVL1VR-Ls)cpilsiB141
CSPI02G19800Melon (DHL92) v3.6.1cpimedB114
CSPI02G19800Cucumber (Gy14) v2cgybcpiB057
CSPI02G19800Cucumber (Gy14) v2cgybcpiB101
CSPI02G19800Silver-seed gourdcarcpiB0115
CSPI02G19800Silver-seed gourdcarcpiB0209
CSPI02G19800Silver-seed gourdcarcpiB0983
CSPI02G19800Silver-seed gourdcarcpiB1012
CSPI02G19800Cucumber (Chinese Long) v3cpicucB089
CSPI02G19800Watermelon (97103) v2cpiwmbB137
CSPI02G19800Watermelon (97103) v2cpiwmbB166
CSPI02G19800Wax gourdcpiwgoB159
CSPI02G19800Wild cucumber (PI 183967)cpicpiB058
CSPI02G19800Cucumber (Gy14) v1cgycpiB341
CSPI02G19800Cucumber (Gy14) v1cgycpiB502
CSPI02G19800Cucurbita maxima (Rimu)cmacpiB011
CSPI02G19800Cucurbita maxima (Rimu)cmacpiB175
CSPI02G19800Cucurbita maxima (Rimu)cmacpiB440
CSPI02G19800Cucurbita maxima (Rimu)cmacpiB793