CsaV3_2G025470 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_2G025470
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr2 : 17533946 .. 17535241 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGATTTCGGAACGAATGACTACACAACCGGTAGGGTTCCGAGTCATAGAGATTTTGTTTTGGGCCAAATTTCGTCTGAAGAGGCCCATTTCGATAATTGTGGTTGAAAAAATATCTTTTATTCCCTCTTTATATAATTCTTAAGCTTAAGTCATAAAATTGCTTGGTAAACATCAAATTTAAACTATATATTTAATTTCATTATCATATTTCCATGATAAAAGTAAATCGAGGGTGCAGATAGATATGGGATGGTTAAAAATATATTTAAAATTGATTTTATTGTCTGTTAAAACAAATTCTTGCTAAATATTTTTAAACTTTTGGTAAAACGCAATCTAATTTACTTTGAATTCCACTGACGAATGTAAAGTTGGCCACGTAGTCATGATTAAGAAAAGAAGGGAAAAACAGGTCCGTTTGATTCGGTCAACAGTGAACGTGGCAGACACGTGGACAACCGAAGTTGGGGGCCCAGGGAAGGTCTGACTATAGCCGATTCTCCAACGCATCACGTTTCCGAGAAGAAATAGGGAAAAACAAATTTTTAAATCCCATTAAGAAACGCATCGAAAGAACAAACCAATCCAGATTCAAGAGAGAGGAAGATCCAGAGAGAGGCGACGGAGTAGACGGGGGATTCGGCGTAGCCGCTAGGAAAGATTTCCTTTCCCCTTGCGGTGAAGAAGAACGGTTTCTGATTATATATATGGTAGTTTTACTAAGATTTTCACAAGGAACTGCGATTTGTACTGCCCCTTCTCCCGTCACCATTCAGTCAAATCACGAGTGAGTTCTTCCCGTTTTCTTGTTGTTTGTTTTTTCATCCTTTGTGCTTGATTGGATTTTCTCTTTTCGATGTATTTCATTGTTTTGATTGGTTCTTCCTGGGGGGTTTTGGGTAGTTTGTAATTTCAATTCGCAAAATTTTTCTGCAAATGGGTTTTTGTTTTTATCGAAATATCTTAATTAGGGGTTCAAAAGGTTTTGATTGGGTGGGATTTGTATTGGGTTGCGGGAGTTTTTCGTGTTGCTTTTCTTTCCTGTACGAGTTTGTTGTGATGAATAATTCTTTACGATTATGGTGATCGATTTCTGATGGGGGATTTGTATCTCTTTGATAGATTGATGGGGGCTTTGTTATAATTGAAGCGGTTTGGAATATATTTGGTCTGCAGGCTCAGCTTCATTGTTCCTGTGGATGTATCTTGTCGTCTTTCAAGAAGAAGATTGGCTTGTGAATTTGCCCGAATCCTTACTGGGTATTCTCAGGCCGCCTTGTCCATCTATTGA

mRNA sequence

ATGGCGATTTCGGAACGAATGACTACACAACCGACACGTGGACAACCGAAGTTGGGGGCCCAGGGAAGGTCTGACTATAGCCGATTCTCCAACGCATCACGTTTCCGAGAAGAAATAGGGAAAAACAAATTTTTAAATCCCATTAAGAAACGCATCGAAAGAACAAACCAATCCAGATTCAAGAGAGAGGAAGATCCAGAGAGAGGCGACGGAGTAGACGGGGGATTCGGCGTAGCCGCTAGGAAAGATTTCCTTTCCCCTTGCGGTGAAGAAGAACGGTTTCTGATTATATATATGGTAGTTTTACTAAGATTTTCACAAGGAACTGCGATTTGTACTGCCCCTTCTCCCGTCACCATTCAGTCAAATCACGAGCTCAGCTTCATTGTTCCTGTGGATGTATCTTGTCGTCTTTCAAGAAGAAGATTGGCTTGTGAATTTGCCCGAATCCTTACTGGGTATTCTCAGGCCGCCTTGTCCATCTATTGA

Coding sequence (CDS)

ATGGCGATTTCGGAACGAATGACTACACAACCGACACGTGGACAACCGAAGTTGGGGGCCCAGGGAAGGTCTGACTATAGCCGATTCTCCAACGCATCACGTTTCCGAGAAGAAATAGGGAAAAACAAATTTTTAAATCCCATTAAGAAACGCATCGAAAGAACAAACCAATCCAGATTCAAGAGAGAGGAAGATCCAGAGAGAGGCGACGGAGTAGACGGGGGATTCGGCGTAGCCGCTAGGAAAGATTTCCTTTCCCCTTGCGGTGAAGAAGAACGGTTTCTGATTATATATATGGTAGTTTTACTAAGATTTTCACAAGGAACTGCGATTTGTACTGCCCCTTCTCCCGTCACCATTCAGTCAAATCACGAGCTCAGCTTCATTGTTCCTGTGGATGTATCTTGTCGTCTTTCAAGAAGAAGATTGGCTTGTGAATTTGCCCGAATCCTTACTGGGTATTCTCAGGCCGCCTTGTCCATCTATTGA

Protein sequence

MAISERMTTQPTRGQPKLGAQGRSDYSRFSNASRFREEIGKNKFLNPIKKRIERTNQSRFKREEDPERGDGVDGGFGVAARKDFLSPCGEEERFLIIYMVVLLRFSQGTAICTAPSPVTIQSNHELSFIVPVDVSCRLSRRRLACEFARILTGYSQAALSIY
Homology
[Close]
BLAST of CsaV3_2G025470 vs. NCBI nr
Match: KGN62379.1 (hypothetical protein Csa_2G351600 [Cucumis sativus])

HSP 1 Score: 321.2 bits (822), Expect = 2.0e-84
Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 0 

Query: 1   MAISERMTTQPTRGQPKLGAQGRSDYSRFSNASRFREEIGKNKFLNPIKKRIERTNQSRF 60
           MAISERMTTQPTRGQPKLGAQGRSDYSRFSNASRFREEIGKNKFLNPIKKRIERTNQSRF
Sbjct: 1   MAISERMTTQPTRGQPKLGAQGRSDYSRFSNASRFREEIGKNKFLNPIKKRIERTNQSRF 60

Query: 61  KREEDPERGDGVDGGFGVAARKDFLSPCGEEERFLIIYMVVLLRFSQGTAICTAPSPVTI 120
           KREEDPERGDGVDGGFGVAARKDFLSPCGEEERFLIIYMVVLLRFSQGTAICTAPSPVTI
Sbjct: 61  KREEDPERGDGVDGGFGVAARKDFLSPCGEEERFLIIYMVVLLRFSQGTAICTAPSPVTI 120

Query: 121 QSNHELSFIVPVDVSCRLSRRRLACEFARILTGYSQAALSIY 163
           QSNHELSFIVPVDVSCRLSRRRLACEFARILTGYSQAALSIY
Sbjct: 121 QSNHELSFIVPVDVSCRLSRRRLACEFARILTGYSQAALSIY 162

[Close]
BLAST of CsaV3_2G025470 vs. TrEMBL
Match: tr|A0A0A0LN05|A0A0A0LN05_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G351600 PE=4 SV=1)

HSP 1 Score: 321.2 bits (822), Expect = 1.3e-84
Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 0 

Query: 1   MAISERMTTQPTRGQPKLGAQGRSDYSRFSNASRFREEIGKNKFLNPIKKRIERTNQSRF 60
           MAISERMTTQPTRGQPKLGAQGRSDYSRFSNASRFREEIGKNKFLNPIKKRIERTNQSRF
Sbjct: 1   MAISERMTTQPTRGQPKLGAQGRSDYSRFSNASRFREEIGKNKFLNPIKKRIERTNQSRF 60

Query: 61  KREEDPERGDGVDGGFGVAARKDFLSPCGEEERFLIIYMVVLLRFSQGTAICTAPSPVTI 120
           KREEDPERGDGVDGGFGVAARKDFLSPCGEEERFLIIYMVVLLRFSQGTAICTAPSPVTI
Sbjct: 61  KREEDPERGDGVDGGFGVAARKDFLSPCGEEERFLIIYMVVLLRFSQGTAICTAPSPVTI 120

Query: 121 QSNHELSFIVPVDVSCRLSRRRLACEFARILTGYSQAALSIY 163
           QSNHELSFIVPVDVSCRLSRRRLACEFARILTGYSQAALSIY
Sbjct: 121 QSNHELSFIVPVDVSCRLSRRRLACEFARILTGYSQAALSIY 162

The following BLAST results are available for this feature:
BLAST of CsaV3_2G025470 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN62379.12.0e-84100.00hypothetical protein Csa_2G351600 [Cucumis sativus][more]
BLAST of CsaV3_2G025470 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G025470 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G025470 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LN05|A0A0A0LN05_CUCSA1.3e-84100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G351600 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_2G025470.1CsaV3_2G025470.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..26
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..17

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_2G025470CSPI02G17880Wild cucumber (PI 183967)cpicucB081
CsaV3_2G025470Carg23952Silver-seed gourdcarcucB0735
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_2G025470Silver-seed gourdcarcucB0209
CsaV3_2G025470Silver-seed gourdcarcucB0657
CsaV3_2G025470Cucumber (Gy14) v2cgybcucB065
CsaV3_2G025470Cucumber (Gy14) v1cgycucB596
CsaV3_2G025470Cucurbita maxima (Rimu)cmacucB0926
CsaV3_2G025470Cucurbita moschata (Rifu)cmocucB0918
CsaV3_2G025470Cucurbita pepo (Zucchini)cpecucB0106
CsaV3_2G025470Bottle gourd (USVL1VR-Ls)cuclsiB155
CsaV3_2G025470Melon (DHL92) v3.5.1cucmeB124
CsaV3_2G025470Melon (DHL92) v3.6.1cucmedB118
CsaV3_2G025470Watermelon (Charleston Gray)cucwcgB176
CsaV3_2G025470Watermelon (97103) v1cucwmB124
CsaV3_2G025470Watermelon (97103) v2cucwmbB164
CsaV3_2G025470Wax gourdcucwgoB169