CSPI02G17880 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI02G17880
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr2 : 16725887 .. 16727182 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGATTTCGGAACGAATGACTACACAACCGGTAGGGTTCCGAGTCATAGAGATTTTGTTTTGGGCCAAATTTCGTCTGAAGAGGCCCATTTCGATAATTGTGGTTGAAACAATATCTTTTATTCCCTCTTTATATAATTCTTAAGCTTAAGTCATAAAATTGCTTGGTAAACATCAAATTTAAACTATATATTTAATTTCATTATCATATTTCCATGATAAAAGTAAATCGAGGGTGCAGATAGATATGGGATGGTTAAAAATATATTTAAAATTGATTTTATTGTCTGTTAAAACAAATTCTTGCTAAATATTTTTAAACTTTTGGTAAAACGCAATCTAATTTACTTTGAATTCCACGGACGAATGTAAAGTTGGCCACGTAGTCATGATTAAGAAAAGAAGGGAAAAACAGGTCCGTTTGATTCGGTCAACAGTGAACGTGGCAGACACGTGGACAACCGAAGTTGGGGGCCCAGGGAAGGTCTGACTATAGCCGATTCTCCAACGCATCACGTTTCCGAGAAGAAATAGGGAAAAACAAATTTTTAAATCCCATTAAGAAACGCATCGAAAGAACAAACCAATCCAGATTCAAGAGAGAGGAAGATCCAGAGAGAGGCGACGGAGTAGACGGGGGATTCGGCGTAGCCGCTAGGAAAGATTTCCTTTCCCCTTGCGGTGAAGAAGAACGGTTTCTGATTATATATATGGTAGTTTTACTAAGATTTTCACAAGGAACTGCGATTTGTACTGCCCCTTCTCCCGTCACCATTCAGTCAAATCACGAGTGAGTTCTTCCCGTTTTCTTGTTGTTTGTTTTTTCATCCTTTGTGCTTGATTGGATTTTCTCTTTTCGATGTATTTCATTGTTTTGATTGGTTCTTCCTGGGGGGTTTTGGGTAGTTTGTAATTTCAATTCGCAAAATTTTTCTGCAAATGGGTTTTTGTTTTTATCGAAATATCTTAATTAGCGGTTCAAAAGGTTTTGATTGGGTGGGATTTGTATTGGGTTGCGGGAGTTTTTCGTTTTGCTTTTCTTTCCTCTATGAGTTTGTTGTGATGAATAATTCTTTACGATTATGGTGATCGAATTCTGATGGGGGATTTGTATCTCTTTGATAGATTGATGGGGGCTTTGTTATAATTGAAGCGGTTTGGAATATATTTGGTCTGCAGGCTCAGCTTCATTGTTCCTGTGGATGTATCTTGTCGTCTTTCAAGAAGAAGATTGGCTTGTGAATTTGCCCGAATCCTTACTGGGTATTCTCAGGCCGCCTTGTCCATCTATTGA

mRNA sequence

ATGGCGATTTCGGAACGAATGACTACACAACCGACACGTGGACAACCGAAGTTGGGGGCCCAGGGAAGGTCTGACTATAGCCGATTCTCCAACGCATCACGTTTCCGAGAAGAAATAGGGAAAAACAAATTTTTAAATCCCATTAAGAAACGCATCGAAAGAACAAACCAATCCAGATTCAAGAGAGAGGAAGATCCAGAGAGAGGCGACGGAGTAGACGGGGGATTCGGCGTAGCCGCTAGGAAAGATTTCCTTTCCCCTTGCGGTGAAGAAGAACGGTTTCTGATTATATATATGGTAGTTTTACTAAGATTTTCACAAGGAACTGCGATTTGTACTGCCCCTTCTCCCGTCACCATTCAGTCAAATCACGAGCTCAGCTTCATTGTTCCTGTGGATGTATCTTGTCGTCTTTCAAGAAGAAGATTGGCTTGTGAATTTGCCCGAATCCTTACTGGGTATTCTCAGGCCGCCTTGTCCATCTATTGA

Coding sequence (CDS)

ATGGCGATTTCGGAACGAATGACTACACAACCGACACGTGGACAACCGAAGTTGGGGGCCCAGGGAAGGTCTGACTATAGCCGATTCTCCAACGCATCACGTTTCCGAGAAGAAATAGGGAAAAACAAATTTTTAAATCCCATTAAGAAACGCATCGAAAGAACAAACCAATCCAGATTCAAGAGAGAGGAAGATCCAGAGAGAGGCGACGGAGTAGACGGGGGATTCGGCGTAGCCGCTAGGAAAGATTTCCTTTCCCCTTGCGGTGAAGAAGAACGGTTTCTGATTATATATATGGTAGTTTTACTAAGATTTTCACAAGGAACTGCGATTTGTACTGCCCCTTCTCCCGTCACCATTCAGTCAAATCACGAGCTCAGCTTCATTGTTCCTGTGGATGTATCTTGTCGTCTTTCAAGAAGAAGATTGGCTTGTGAATTTGCCCGAATCCTTACTGGGTATTCTCAGGCCGCCTTGTCCATCTATTGA
Homology
[Close]
BLAST of CSPI02G17880 vs. TrEMBL
Match: A0A0A0LN05_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G351600 PE=4 SV=1)

HSP 1 Score: 321.2 bits (822), Expect = 7.1e-85
Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 1 

Query: 1   MAISERMTTQPTRGQPKLGAQGRSDYSRFSNASRFREEIGKNKFLNPIKKRIERTNQSRF 60
           MAISERMTTQPTRGQPKLGAQGRSDYSRFSNASRFREEIGKNKFLNPIKKRIERTNQSRF
Sbjct: 1   MAISERMTTQPTRGQPKLGAQGRSDYSRFSNASRFREEIGKNKFLNPIKKRIERTNQSRF 60

Query: 61  KREEDPERGDGVDGGFGVAARKDFLSPCGEEERFLIIYMVVLLRFSQGTAICTAPSPVTI 120
           KREEDPERGDGVDGGFGVAARKDFLSPCGEEERFLIIYMVVLLRFSQGTAICTAPSPVTI
Sbjct: 61  KREEDPERGDGVDGGFGVAARKDFLSPCGEEERFLIIYMVVLLRFSQGTAICTAPSPVTI 120

Query: 121 QSNHELSFIVPVDVSCRLSRRRLACEFARILTGYSQAALSIY 163
           QSNHELSFIVPVDVSCRLSRRRLACEFARILTGYSQAALSIY
Sbjct: 121 QSNHELSFIVPVDVSCRLSRRRLACEFARILTGYSQAALSIY 162

[Close]
BLAST of CSPI02G17880 vs. NCBI nr
Match: gi|700207260|gb|KGN62379.1| (hypothetical protein Csa_2G351600 [Cucumis sativus])

HSP 1 Score: 321.2 bits (822), Expect = 1.0e-84
Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 1 

Query: 1   MAISERMTTQPTRGQPKLGAQGRSDYSRFSNASRFREEIGKNKFLNPIKKRIERTNQSRF 60
           MAISERMTTQPTRGQPKLGAQGRSDYSRFSNASRFREEIGKNKFLNPIKKRIERTNQSRF
Sbjct: 1   MAISERMTTQPTRGQPKLGAQGRSDYSRFSNASRFREEIGKNKFLNPIKKRIERTNQSRF 60

Query: 61  KREEDPERGDGVDGGFGVAARKDFLSPCGEEERFLIIYMVVLLRFSQGTAICTAPSPVTI 120
           KREEDPERGDGVDGGFGVAARKDFLSPCGEEERFLIIYMVVLLRFSQGTAICTAPSPVTI
Sbjct: 61  KREEDPERGDGVDGGFGVAARKDFLSPCGEEERFLIIYMVVLLRFSQGTAICTAPSPVTI 120

Query: 121 QSNHELSFIVPVDVSCRLSRRRLACEFARILTGYSQAALSIY 163
           QSNHELSFIVPVDVSCRLSRRRLACEFARILTGYSQAALSIY
Sbjct: 121 QSNHELSFIVPVDVSCRLSRRRLACEFARILTGYSQAALSIY 162

The following BLAST results are available for this feature:
BLAST of CSPI02G17880 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI02G17880 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LN05_CUCSA7.1e-85100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G351600 PE=4 SV=1[more]
BLAST of CSPI02G17880 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI02G17880 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700207260|gb|KGN62379.1|1.0e-84100.00hypothetical protein Csa_2G351600 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI02G17880.1CSPI02G17880.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI02G17880Csa2G351600Cucumber (Chinese Long) v2cpicuB065
CSPI02G17880CsaV3_2G025470Cucumber (Chinese Long) v3cpicucB081
CSPI02G17880Carg23952Silver-seed gourdcarcpiB0732
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI02G17880Wax gourdcpiwgoB159
CSPI02G17880Cucumber (Gy14) v1cgycpiB578
CSPI02G17880Cucurbita maxima (Rimu)cmacpiB793
CSPI02G17880Cucurbita moschata (Rifu)cmocpiB782
CSPI02G17880Melon (DHL92) v3.5.1cpimeB118
CSPI02G17880Watermelon (Charleston Gray)cpiwcgB172
CSPI02G17880Watermelon (97103) v1cpiwmB116
CSPI02G17880Cucurbita pepo (Zucchini)cpecpiB092
CSPI02G17880Bottle gourd (USVL1VR-Ls)cpilsiB141
CSPI02G17880Melon (DHL92) v3.6.1cpimedB114
CSPI02G17880Cucumber (Gy14) v2cgybcpiB057
CSPI02G17880Silver-seed gourdcarcpiB0209
CSPI02G17880Silver-seed gourdcarcpiB0656
CSPI02G17880Watermelon (97103) v2cpiwmbB166