CsaV3_2G017950 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_2G017950
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr2 : 14938987 .. 14939136 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAATGATCGCGAGGGTGCACAACTAGAAACGGGAAGTTCGGCGTTGGTTGCTTTACACCAGGGGTGCCGTCAGATACACAGATCTGATTCAGGGCCACCGCCGTCACACGTTCGTAGGCGGGAAAAGGGTGTCGCCACCGCGTGA

mRNA sequence

ATGGAGAATGATCGCGAGGGTGCACAACTAGAAACGGGAAGTTCGGCGTTGGTTGCTTTACACCAGGGGTGCCGTCAGATACACAGATCTGATTCAGGGCCACCGCCGTCACACGTTCGTAGGCGGGAAAAGGGTGTCGCCACCGCGTGA

Coding sequence (CDS)

ATGGAGAATGATCGCGAGGGTGCACAACTAGAAACGGGAAGTTCGGCGTTGGTTGCTTTACACCAGGGGTGCCGTCAGATACACAGATCTGATTCAGGGCCACCGCCGTCACACGTTCGTAGGCGGGAAAAGGGTGTCGCCACCGCGTGA

Protein sequence

MENDREGAQLETGSSALVALHQGCRQIHRSDSGPPPSHVRRREKGVATA

Homology

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BLAST of CsaV3_2G017950 vs. NCBI nr
Match: KGN62115.1 (hypothetical protein Csa_2G299370 [Cucumis sativus])

HSP 1 Score: 102.4 bits (254), Expect = 4.4e-19
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 0


Query: 1  MENDREGAQLETGSSALVALHQGCRQIHRSDSGPPPSHVRRREKGVATA 50
          MENDREGAQLETGSSALVALHQGCRQIHRSDSGPPPSHVRRREKGVATA
Sbjct: 36 MENDREGAQLETGSSALVALHQGCRQIHRSDSGPPPSHVRRREKGVATA 84

[Close]

BLAST of CsaV3_2G017950 vs. TrEMBL
Match: tr|A0A0A0LJQ4|A0A0A0LJQ4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G299370 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 2.9e-19
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 0


Query: 1  MENDREGAQLETGSSALVALHQGCRQIHRSDSGPPPSHVRRREKGVATA 50
          MENDREGAQLETGSSALVALHQGCRQIHRSDSGPPPSHVRRREKGVATA
Sbjct: 36 MENDREGAQLETGSSALVALHQGCRQIHRSDSGPPPSHVRRREKGVATA 84

The following BLAST results are available for this feature:

BLAST of CsaV3_2G017950 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN62115.1	4.4e-19	100.00	hypothetical protein Csa_2G299370 [Cucumis sativus]	[more]

BLAST of CsaV3_2G017950 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_2G017950 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_2G017950 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LJQ4\|A0A0A0LJQ4_CUCSA	2.9e-19	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G299370 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_2G017950.1	CsaV3_2G017950.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 34..49
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 24..49

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_2G017950	CSPI02G15390	Wild cucumber (PI 183967)	cpicucB080
CsaV3_2G017950	CsGy2G015380	Cucumber (Gy14) v2	cgybcucB064

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_2G017950	Silver-seed gourd	carcucB0268
CsaV3_2G017950	Silver-seed gourd	carcucB1104
CsaV3_2G017950	Cucumber (Gy14) v1	cgycucB380
CsaV3_2G017950	Cucurbita maxima (Rimu)	cmacucB0652
CsaV3_2G017950	Cucurbita maxima (Rimu)	cmacucB0695
CsaV3_2G017950	Cucurbita maxima (Rimu)	cmacucB0704
CsaV3_2G017950	Cucurbita moschata (Rifu)	cmocucB0680
CsaV3_2G017950	Cucurbita moschata (Rifu)	cmocucB0638
CsaV3_2G017950	Cucurbita moschata (Rifu)	cmocucB0642
CsaV3_2G017950	Cucurbita moschata (Rifu)	cmocucB0691
CsaV3_2G017950	Cucurbita pepo (Zucchini)	cpecucB0335
CsaV3_2G017950	Cucurbita pepo (Zucchini)	cpecucB0882
CsaV3_2G017950	Wild cucumber (PI 183967)	cpicucB329
CsaV3_2G017950	Bottle gourd (USVL1VR-Ls)	cuclsiB106
CsaV3_2G017950	Melon (DHL92) v3.5.1	cucmeB104
CsaV3_2G017950	Melon (DHL92) v3.6.1	cucmedB097
CsaV3_2G017950	Watermelon (Charleston Gray)	cucwcgB139
CsaV3_2G017950	Watermelon (97103) v1	cucwmB154
CsaV3_2G017950	Watermelon (97103) v2	cucwmbB104
CsaV3_2G017950	Watermelon (97103) v2	cucwmbB124
CsaV3_2G017950	Wax gourd	cucwgoB181
CsaV3_2G017950	Wax gourd	cucwgoB189
CsaV3_2G017950	Wax gourd	cucwgoB196
CsaV3_2G017950	Cucumber (Chinese Long) v3	cuccucB092