CsGy2G015380 (gene) Cucumber (Gy14) v2

Overview
NameCsGy2G015380
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionUncharacterized protein
LocationChr2 : 15316114 .. 15316597 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGGCGATGGGTTTCCCTAGTGAGCTTCAATGCCACCGAATGCATCATCTAATTAATACATTTCCTTCACACCAATGATATATAATGCAAGAAACAAAAAATTGATAAAAAAAATAAATAGATGTTGCAAGATCCACATAAAAATGGATCAGAATAGGCAGTGGCAATCAGAAGAGGATGTAAGAACCTCGTCATCGACCGCGGGAAAGGATCCAATTGAGTATTGATAGGAGGAATGGGTGCCACGGGGTCCCGTAATCACATCATGGATTTCCTGAATTAAGCTGCAGACAATTTCCCTAGGCAATTGGCTTTGAATTCGAAATCTAGCATGGAGAATGATCGCGAGGGTGCACAACTAGAAACGGGAAGTTCGGCGTTGGTTGCTTTACACCAGGGGTGCCGTCAGATACACAGATCTGATTCAGGGCCACCGCCGTCACACGTTCGTAGGCGGGAAAAGGGTGTCGCCACCGCGTGA

mRNA sequence

ATGAAGGCGATGGGTTTCCCTAACAATTTCCCTAGGCAATTGGCTTTGAATTCGAAATCTAGCATGGAGAATGATCGCGAGGGTGCACAACTAGAAACGGGAAGTTCGGCGTTGGTTGCTTTACACCAGGGGTGCCGTCAGATACACAGATCTGATTCAGGGCCACCGCCGTCACACGTTCGTAGGCGGGAAAAGGGTGTCGCCACCGCGTGA

Coding sequence (CDS)

ATGAAGGCGATGGGTTTCCCTAACAATTTCCCTAGGCAATTGGCTTTGAATTCGAAATCTAGCATGGAGAATGATCGCGAGGGTGCACAACTAGAAACGGGAAGTTCGGCGTTGGTTGCTTTACACCAGGGGTGCCGTCAGATACACAGATCTGATTCAGGGCCACCGCCGTCACACGTTCGTAGGCGGGAAAAGGGTGTCGCCACCGCGTGA

Protein sequence

MKAMGFPNNFPRQLALNSKSSMENDREGAQLETGSSALVALHQGCRQIHRSDSGPPPSHVRRREKGVATA
Homology
[Close]
BLAST of CsGy2G015380 vs. NCBI nr
Match: KGN62115.1 (hypothetical protein Csa_2G299370 [Cucumis sativus])

HSP 1 Score: 116.3 bits (290), Expect = 4.1e-23
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0 

Query: 13 QLALNSKSSMENDREGAQLETGSSALVALHQGCRQIHRSDSGPPPSHVRRREKGVATA 71
          QLALNSKSSMENDREGAQLETGSSALVALHQGCRQIHRSDSGPPPSHVRRREKGVATA
Sbjct: 27 QLALNSKSSMENDREGAQLETGSSALVALHQGCRQIHRSDSGPPPSHVRRREKGVATA 84

[Close]
BLAST of CsGy2G015380 vs. TrEMBL
Match: tr|A0A0A0LJQ4|A0A0A0LJQ4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G299370 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 2.7e-23
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0 

Query: 13 QLALNSKSSMENDREGAQLETGSSALVALHQGCRQIHRSDSGPPPSHVRRREKGVATA 71
          QLALNSKSSMENDREGAQLETGSSALVALHQGCRQIHRSDSGPPPSHVRRREKGVATA
Sbjct: 27 QLALNSKSSMENDREGAQLETGSSALVALHQGCRQIHRSDSGPPPSHVRRREKGVATA 84

The following BLAST results are available for this feature:
BLAST of CsGy2G015380 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN62115.14.1e-23100.00hypothetical protein Csa_2G299370 [Cucumis sativus][more]
BLAST of CsGy2G015380 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsGy2G015380 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy2G015380 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LJQ4|A0A0A0LJQ4_CUCSA2.7e-23100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G299370 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy2G015380.1CsGy2G015380.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 55..70
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..70
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 11..31

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy2G015380Csa2G299370Cucumber (Chinese Long) v2cgybcuB056
CsGy2G015380CSPI02G15390Wild cucumber (PI 183967)cgybcpiB056
CsGy2G015380CsaV3_2G017950Cucumber (Chinese Long) v3cgybcucB064
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy2G015380Silver-seed gourdcarcgybB0253
CsGy2G015380Silver-seed gourdcarcgybB1038
CsGy2G015380Silver-seed gourdcarcgybB1040
CsGy2G015380Cucumber (Chinese Long) v3cgybcucB089
CsGy2G015380Watermelon (97103) v2cgybwmbB094
CsGy2G015380Watermelon (97103) v2cgybwmbB115
CsGy2G015380Wax gourdcgybwgoB177
CsGy2G015380Wax gourdcgybwgoB169
CsGy2G015380Wax gourdcgybwgoB184
CsGy2G015380Cucumber (Gy14) v2cgybcgybB066
CsGy2G015380Cucurbita maxima (Rimu)cgybcmaB219
CsGy2G015380Cucurbita maxima (Rimu)cgybcmaB223
CsGy2G015380Cucurbita maxima (Rimu)cgybcmaB232
CsGy2G015380Cucurbita maxima (Rimu)cgybcmaB238
CsGy2G015380Cucurbita moschata (Rifu)cgybcmoB210
CsGy2G015380Cucurbita moschata (Rifu)cgybcmoB214
CsGy2G015380Cucurbita moschata (Rifu)cgybcmoB215
CsGy2G015380Cucurbita moschata (Rifu)cgybcmoB224
CsGy2G015380Cucurbita pepo (Zucchini)cgybcpeB156
CsGy2G015380Cucurbita pepo (Zucchini)cgybcpeB194
CsGy2G015380Cucurbita pepo (Zucchini)cgybcpeB243
CsGy2G015380Cucumber (Chinese Long) v2cgybcuB084
CsGy2G015380Bottle gourd (USVL1VR-Ls)cgyblsiB086
CsGy2G015380Bottle gourd (USVL1VR-Ls)cgyblsiB096
CsGy2G015380Melon (DHL92) v3.5.1cgybmeB086
CsGy2G015380Melon (DHL92) v3.6.1cgybmedB081
CsGy2G015380Watermelon (Charleston Gray)cgybwcgB113
CsGy2G015380Watermelon (Charleston Gray)cgybwcgB121
CsGy2G015380Watermelon (97103) v1cgybwmB127
CsGy2G015380Watermelon (97103) v1cgybwmB134
CsGy2G015380Wild cucumber (PI 183967)cgybcpiB084