CsaV3_2G017100 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_2G017100
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr2 : 14315398 .. 14316246 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTTATCTTCATCGCATGGGAGTTTCTTCCCTCTCTTTCTGTATGCCTACAATGCCTACAAATCAAAGTAGTATCACTCTTAAATATCGTATTCCTTGTAAGTAATTTTCGTTTTATTATTTTTGTTCTTCATCTACAATGCCTACAAATCAATTATTTTTGTTCTTCATATATATATATCATTGATTTTTTTAAGGTCAAGAAAACCCATTTTACACGAAAGTGCTACCAATGTCCATAGTTGAAGAACCTGCGGAGGTTGGGGACGTTGACTATGGTTCTTTCTTTGTATCAATGGCTTTAGAGGAGTTTCGATGTGTTGTACAAGACATGGAAAATGCTGATTATGGTAAATATATATAAACTTACATCGAAGTTTTGTAAGGAATTTTTTTTAATGTTTTGTTAATTTGGATCACAGTTCGTGTTACTATTACGAGTTCACAAATCAAATTTGTGGCTCCAGTTGATCATTGGGAAACTAGTTTTACCACCCAGGTACTTTCTTCAATTTTAGTGTGTATATATATATATGTTGTAATTTGAGCAAATCTTATATTTAGCTTCTTATAATCTTTTATCAAAATGATCAAATTCATTTGCATGACATTGTTTTTGTAGGAAGGAAAATGCATAATTGGAGGTATTGAAGAAGGAGAAGAAATTAAATGTGGAATTAGTCTTTATCCAATGGAATTTTACAAAGCTTTCACATCAAAAAGAGTTTGGTTTTTCAGTTCATGTGATACCAATGGTTTGCTTTTGATTGCTCCTATGGGAGTTTATACTCATATTTCTTCATTTTTTCCCCAAGATATACCTAATGGAGGAAATACATCGACCTGA

mRNA sequence

ATGACTTATCTTCATCGCATGGGAGTTTCTTCCCTCTCTTTCTGTATGCCTACAATGCCTACAAATCAAAGTAGTATCACTCTTAAATATCGTATTCCTTGTCAAGAAAACCCATTTTACACGAAAGTGCTACCAATGTCCATAGTTGAAGAACCTGCGGAGGTTGGGGACGTTGACTATGGTTCTTTCTTTGTATCAATGGCTTTAGAGGAGTTTCGATGTGTTGTACAAGACATGGAAAATGCTGATTATGTTCGTGTTACTATTACGAGTTCACAAATCAAATTTGTGGCTCCAGTTGATCATTGGGAAACTAGTTTTACCACCCAGGAAGGAAAATGCATAATTGGAGGTATTGAAGAAGGAGAAGAAATTAAATGTGGAATTAGTCTTTATCCAATGGAATTTTACAAAGCTTTCACATCAAAAAGAGTTTGGTTTTTCAGTTCATGTGATACCAATGGTTTGCTTTTGATTGCTCCTATGGGAGTTTATACTCATATTTCTTCATTTTTTCCCCAAGATATACCTAATGGAGGAAATACATCGACCTGA

Coding sequence (CDS)

ATGACTTATCTTCATCGCATGGGAGTTTCTTCCCTCTCTTTCTGTATGCCTACAATGCCTACAAATCAAAGTAGTATCACTCTTAAATATCGTATTCCTTGTCAAGAAAACCCATTTTACACGAAAGTGCTACCAATGTCCATAGTTGAAGAACCTGCGGAGGTTGGGGACGTTGACTATGGTTCTTTCTTTGTATCAATGGCTTTAGAGGAGTTTCGATGTGTTGTACAAGACATGGAAAATGCTGATTATGTTCGTGTTACTATTACGAGTTCACAAATCAAATTTGTGGCTCCAGTTGATCATTGGGAAACTAGTTTTACCACCCAGGAAGGAAAATGCATAATTGGAGGTATTGAAGAAGGAGAAGAAATTAAATGTGGAATTAGTCTTTATCCAATGGAATTTTACAAAGCTTTCACATCAAAAAGAGTTTGGTTTTTCAGTTCATGTGATACCAATGGTTTGCTTTTGATTGCTCCTATGGGAGTTTATACTCATATTTCTTCATTTTTTCCCCAAGATATACCTAATGGAGGAAATACATCGACCTGA

Protein sequence

MTYLHRMGVSSLSFCMPTMPTNQSSITLKYRIPCQENPFYTKVLPMSIVEEPAEVGDVDYGSFFVSMALEEFRCVVQDMENADYVRVTITSSQIKFVAPVDHWETSFTTQEGKCIIGGIEEGEEIKCGISLYPMEFYKAFTSKRVWFFSSCDTNGLLLIAPMGVYTHISSFFPQDIPNGGNTST

Homology

[Close]

BLAST of CsaV3_2G017100 vs. NCBI nr
Match: KGN62033.1 (hypothetical protein Csa_2G287150 [Cucumis sativus])

HSP 1 Score: 292.0 bits (746), Expect = 1.5e-75
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0


Query: 46  MSIVEEPAEVGDVDYGSFFVSMALEEFRCVVQDMENADYVRVTITSSQIKFVAPVDHWET 105
           MSIVEEPAEVGDVDYGSFFVSMALEEFRCVVQDMENADYVRVTITSSQIKFVAPVDHWET
Sbjct: 1   MSIVEEPAEVGDVDYGSFFVSMALEEFRCVVQDMENADYVRVTITSSQIKFVAPVDHWET 60

Query: 106 SFTTQEGKCIIGGIEEGEEIKCGISLYPMEFYKAFTSKRVWFFSSCDTNGLLLIAPMGVY 165
           SFTTQEGKCIIGGIEEGEEIKCGISLYPMEFYKAFTSKRVWFFSSCDTNGLLLIAPMGVY
Sbjct: 61  SFTTQEGKCIIGGIEEGEEIKCGISLYPMEFYKAFTSKRVWFFSSCDTNGLLLIAPMGVY 120

Query: 166 THISSFFPQDIPNGGNTST 185
           THISSFFPQDIPNGGNTST
Sbjct: 121 THISSFFPQDIPNGGNTST 139

[Close]

BLAST of CsaV3_2G017100 vs. NCBI nr
Match: XP_008457793.2 (PREDICTED: uncharacterized protein LOC103497397 [Cucumis melo])

HSP 1 Score: 262.3 bits (669), Expect = 1.2e-66
Identity = 124/142 (87.32%), Postives = 133/142 (93.66%), Query Frame = 0


Query: 35  QENPFYTKVLPMSIVEEPAEVGDVDYGSFFVSMALEEFRCVVQDMENADYVRVTITSSQI 94
           QE+PF  K LPMSIV EP +VGDVDYGSFFVSMALEEFRCVV DMENA YV VTITSS+I
Sbjct: 185 QEDPFNKKELPMSIVAEPVDVGDVDYGSFFVSMALEEFRCVVNDMENAAYVPVTITSSRI 244

Query: 95  KFVAPVDHWETSFTTQEGKCIIGGIEEGEEIKCGISLYPMEFYKAFTSKRVWFFSSCDTN 154
           KFVA +DHWETSFTT+EG+CIIGGIEEG+EIKCGISLYPM+FYKAFTSKRVWFFSSCDTN
Sbjct: 245 KFVALIDHWETSFTTKEGECIIGGIEEGQEIKCGISLYPMKFYKAFTSKRVWFFSSCDTN 304

Query: 155 GLLLIAPMGVYTHISSFFPQDI 177
           GLLLIAPMGVYTHISSFFPQ+I
Sbjct: 305 GLLLIAPMGVYTHISSFFPQEI 326

[Close]

BLAST of CsaV3_2G017100 vs. NCBI nr
Match: KGN62032.1 (hypothetical protein Csa_2G287140 [Cucumis sativus])

HSP 1 Score: 239.6 bits (610), Expect = 8.6e-60
Identity = 117/140 (83.57%), Postives = 125/140 (89.29%), Query Frame = 0


Query: 46  MSIVEEPAEVGDVDYGSFFVSMALEEFRCVVQDMENADYVRVTITSSQIKFVAPVDH-WE 105
           MSIVEE A VGDVDYGSFFVSMAL++FRCVVQDME++DYV +TI SSQI FV  VDH WE
Sbjct: 1   MSIVEEHANVGDVDYGSFFVSMALDDFRCVVQDMEDSDYVPITIRSSQINFV--VDHDWE 60

Query: 106 TSFTTQEGKCIIGGIEEGEEIKCGISLYPMEFYKAFTSKRVWFFSSCDTNGLLLIAPMGV 165
           TSFT +EG+CIIGGIEEG+EI CGIS YPMEFYK FTSKRVWFFSSCDTNGLLLIAPMGV
Sbjct: 61  TSFTAKEGECIIGGIEEGDEINCGISFYPMEFYKGFTSKRVWFFSSCDTNGLLLIAPMGV 120

Query: 166 YTHISSFFPQDIPNGGNTST 185
           YTHISSFFPQDI  GGNT T
Sbjct: 121 YTHISSFFPQDISIGGNTLT 138

[Close]

BLAST of CsaV3_2G017100 vs. NCBI nr
Match: XP_023513336.1 (uncharacterized protein LOC111777844 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 128.6 bits (322), Expect = 2.1e-26
Identity = 71/159 (44.65%), Postives = 97/159 (61.01%), Query Frame = 0


Query: 22  NQSSITLKYRIPCQENPFYTKVLPMSIVEEPAEVGDVDYGSFFVSMALEEFRCVVQDMEN 81
           +Q    +++  P   +P  TK++P S  E     G +DY S FVS  L  FR +V  +EN
Sbjct: 97  HQRHFAMEFSPPSLVHP-RTKLIPTSPPERGINEGAIDYAS-FVSFDLFHFRRLVTGLEN 156

Query: 82  ADYVRVTITSSQIKFVAPVDHWETSFTTQEGKCIIGGIEEGEEIKCGISLYPMEFYKAFT 141
            ++  +TIT SQIKF+  V+  E   TTQ  +CIIGG   GEE +  + L P EF+  FT
Sbjct: 157 NEHAYLTITDSQIKFL--VEDVEVVLTTQRNECIIGGFAAGEEFESAMCLCPWEFFYNFT 216

Query: 142 SKRVWFFSSCDTNGLLLIAPMGVYTHISSFFPQD--IPN 179
           S+R+W F S D  G+ LIAPMG+Y HISS+FP+D  +PN
Sbjct: 217 SERLWLFKSYDPKGMTLIAPMGLYVHISSYFPEDFYMPN 251

[Close]

BLAST of CsaV3_2G017100 vs. NCBI nr
Match: XP_022928046.1 (uncharacterized protein LOC111434948 [Cucurbita moschata])

HSP 1 Score: 128.3 bits (321), Expect = 2.8e-26
Identity = 70/159 (44.03%), Postives = 98/159 (61.64%), Query Frame = 0


Query: 22  NQSSITLKYRIPCQENPFYTKVLPMSIVEEPAEVGDVDYGSFFVSMALEEFRCVVQDMEN 81
           +Q    +++  P   +P  TK++P S  E     G +DY S FVS  L  FR +V  +EN
Sbjct: 97  HQRHFAMEFSPPSLVHP-RTKLIPTSPPERDINEGAIDYAS-FVSFDLFHFRRLVTGLEN 156

Query: 82  ADYVRVTITSSQIKFVAPVDHWETSFTTQEGKCIIGGIEEGEEIKCGISLYPMEFYKAFT 141
            ++  +TIT+SQIKF+  V+  E   TTQ  +CIIGG   G+E +  + L P EF+  FT
Sbjct: 157 NEHAYLTITNSQIKFL--VEDVEVVLTTQRKECIIGGFAAGDEFESAMCLCPWEFFYNFT 216

Query: 142 SKRVWFFSSCDTNGLLLIAPMGVYTHISSFFPQD--IPN 179
           S+R+W F S D  G+ LIAPMG+Y HISS+FP+D  +PN
Sbjct: 217 SERLWLFKSYDPKGMTLIAPMGLYVHISSYFPEDFYVPN 251

[Close]

BLAST of CsaV3_2G017100 vs. TrEMBL
Match: tr|A0A0A0LJU4|A0A0A0LJU4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G287150 PE=4 SV=1)

HSP 1 Score: 292.0 bits (746), Expect = 9.6e-76
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0


Query: 46  MSIVEEPAEVGDVDYGSFFVSMALEEFRCVVQDMENADYVRVTITSSQIKFVAPVDHWET 105
           MSIVEEPAEVGDVDYGSFFVSMALEEFRCVVQDMENADYVRVTITSSQIKFVAPVDHWET
Sbjct: 1   MSIVEEPAEVGDVDYGSFFVSMALEEFRCVVQDMENADYVRVTITSSQIKFVAPVDHWET 60

Query: 106 SFTTQEGKCIIGGIEEGEEIKCGISLYPMEFYKAFTSKRVWFFSSCDTNGLLLIAPMGVY 165
           SFTTQEGKCIIGGIEEGEEIKCGISLYPMEFYKAFTSKRVWFFSSCDTNGLLLIAPMGVY
Sbjct: 61  SFTTQEGKCIIGGIEEGEEIKCGISLYPMEFYKAFTSKRVWFFSSCDTNGLLLIAPMGVY 120

Query: 166 THISSFFPQDIPNGGNTST 185
           THISSFFPQDIPNGGNTST
Sbjct: 121 THISSFFPQDIPNGGNTST 139

[Close]

BLAST of CsaV3_2G017100 vs. TrEMBL
Match: tr|A0A1S3C6G9|A0A1S3C6G9_CUCME (uncharacterized protein LOC103497397 OS=Cucumis melo OX=3656 GN=LOC103497397 PE=4 SV=1)

HSP 1 Score: 262.3 bits (669), Expect = 8.2e-67
Identity = 124/142 (87.32%), Postives = 133/142 (93.66%), Query Frame = 0


Query: 35  QENPFYTKVLPMSIVEEPAEVGDVDYGSFFVSMALEEFRCVVQDMENADYVRVTITSSQI 94
           QE+PF  K LPMSIV EP +VGDVDYGSFFVSMALEEFRCVV DMENA YV VTITSS+I
Sbjct: 185 QEDPFNKKELPMSIVAEPVDVGDVDYGSFFVSMALEEFRCVVNDMENAAYVPVTITSSRI 244

Query: 95  KFVAPVDHWETSFTTQEGKCIIGGIEEGEEIKCGISLYPMEFYKAFTSKRVWFFSSCDTN 154
           KFVA +DHWETSFTT+EG+CIIGGIEEG+EIKCGISLYPM+FYKAFTSKRVWFFSSCDTN
Sbjct: 245 KFVALIDHWETSFTTKEGECIIGGIEEGQEIKCGISLYPMKFYKAFTSKRVWFFSSCDTN 304

Query: 155 GLLLIAPMGVYTHISSFFPQDI 177
           GLLLIAPMGVYTHISSFFPQ+I
Sbjct: 305 GLLLIAPMGVYTHISSFFPQEI 326

[Close]

BLAST of CsaV3_2G017100 vs. TrEMBL
Match: tr|A0A0A0LMQ7|A0A0A0LMQ7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G287140 PE=4 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 5.7e-60
Identity = 117/140 (83.57%), Postives = 125/140 (89.29%), Query Frame = 0


Query: 46  MSIVEEPAEVGDVDYGSFFVSMALEEFRCVVQDMENADYVRVTITSSQIKFVAPVDH-WE 105
           MSIVEE A VGDVDYGSFFVSMAL++FRCVVQDME++DYV +TI SSQI FV  VDH WE
Sbjct: 1   MSIVEEHANVGDVDYGSFFVSMALDDFRCVVQDMEDSDYVPITIRSSQINFV--VDHDWE 60

Query: 106 TSFTTQEGKCIIGGIEEGEEIKCGISLYPMEFYKAFTSKRVWFFSSCDTNGLLLIAPMGV 165
           TSFT +EG+CIIGGIEEG+EI CGIS YPMEFYK FTSKRVWFFSSCDTNGLLLIAPMGV
Sbjct: 61  TSFTAKEGECIIGGIEEGDEINCGISFYPMEFYKGFTSKRVWFFSSCDTNGLLLIAPMGV 120

Query: 166 YTHISSFFPQDIPNGGNTST 185
           YTHISSFFPQDI  GGNT T
Sbjct: 121 YTHISSFFPQDISIGGNTLT 138

[Close]

BLAST of CsaV3_2G017100 vs. TrEMBL
Match: tr|A0A0A0LQ10|A0A0A0LQ10_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G287180 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 1.0e-24
Identity = 58/77 (75.32%), Postives = 64/77 (83.12%), Query Frame = 0


Query: 104 ETSFTTQEGKCIIGGIEEGEEIKCGISLYPMEFYKAFTSKRVW-FFSSCDTNGLLLIAPM 163
           E   TT+EG+CIIGG EEG+EIKCGISLYPMEFYKAFTSK VW  F+S D NG+LLIAPM
Sbjct: 2   EVILTTKEGECIIGGTEEGDEIKCGISLYPMEFYKAFTSKGVWLLFNSYDPNGMLLIAPM 61

Query: 164 GVYTHISSFFPQDIPNG 180
           G+YTHISSF P DI  G
Sbjct: 62  GLYTHISSFSPHDIYGG 78

[Close]

BLAST of CsaV3_2G017100 vs. TrEMBL
Match: tr|A0A1S4E1P6|A0A1S4E1P6_CUCME (uncharacterized protein LOC103497437 OS=Cucumis melo OX=3656 GN=LOC103497437 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 2.4e-18
Identity = 56/120 (46.67%), Postives = 73/120 (60.83%), Query Frame = 0


Query: 56  GDVDYGSFFVSMALEEFRCVVQDMENA-DYVRVTITSSQIKFVAPVDHWETSFTTQEGKC 115
           G + YG  FVS+ L +FR VV   +N   +V   +T S+ KF  P    E  FT +   C
Sbjct: 131 GKIGYGP-FVSLELHDFRNVVLIFDNTKTHVPFRVTISEFKFFLP--DKEIIFTNERDGC 190

Query: 116 IIGGIEEGEEIKCGISLYPMEFYKAFTSKRVWFFSSCDTNGLLLIAPMGVYTHISSFFPQ 175
           IIGGI EGEE +  + L P+E Y  FTSKR+W F S D  G+ L+AP G+Y +IS+FFPQ
Sbjct: 191 IIGGIREGEEWRGAMCLNPIEGYFNFTSKRLWLFESYDPIGVTLVAPFGLYVNISTFFPQ 247

The following BLAST results are available for this feature:

BLAST of CsaV3_2G017100 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN62033.1	1.5e-75	100.00	hypothetical protein Csa_2G287150 [Cucumis sativus]	[more]
XP_008457793.2	1.2e-66	87.32	PREDICTED: uncharacterized protein LOC103497397 [Cucumis melo]	[more]
KGN62032.1	8.6e-60	83.57	hypothetical protein Csa_2G287140 [Cucumis sativus]	[more]
XP_023513336.1	2.1e-26	44.65	uncharacterized protein LOC111777844 [Cucurbita pepo subsp. pepo]	[more]
XP_022928046.1	2.8e-26	44.03	uncharacterized protein LOC111434948 [Cucurbita moschata]	[more]

BLAST of CsaV3_2G017100 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_2G017100 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_2G017100 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LJU4\|A0A0A0LJU4_CUCSA	9.6e-76	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G287150 PE=4 SV=1	[more]
tr\|A0A1S3C6G9\|A0A1S3C6G9_CUCME	8.2e-67	87.32	uncharacterized protein LOC103497397 OS=Cucumis melo OX=3656 GN=LOC103497397 PE=...	[more]
tr\|A0A0A0LMQ7\|A0A0A0LMQ7_CUCSA	5.7e-60	83.57	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G287140 PE=4 SV=1	[more]
tr\|A0A0A0LQ10\|A0A0A0LQ10_CUCSA	1.0e-24	75.32	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G287180 PE=4 SV=1	[more]
tr\|A0A1S4E1P6\|A0A1S4E1P6_CUCME	2.4e-18	46.67	uncharacterized protein LOC103497437 OS=Cucumis melo OX=3656 GN=LOC103497437 PE=...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_2G017100.1	CsaV3_2G017100.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_2G017100	Cp4.1LG05g11130	Cucurbita pepo (Zucchini)	cpecucB0890
CsaV3_2G017100	CsGy2G014560	Cucumber (Gy14) v2	cgybcucB068

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_2G017100	Wax gourd	cucwgoB181
CsaV3_2G017100	Wax gourd	cucwgoB188
CsaV3_2G017100	Cucumber (Chinese Long) v3	cuccucB093
CsaV3_2G017100	Silver-seed gourd	carcucB1036
CsaV3_2G017100	Silver-seed gourd	carcucB1103
CsaV3_2G017100	Cucumber (Gy14) v2	cgybcucB064
CsaV3_2G017100	Cucumber (Gy14) v2	cgybcucB264
CsaV3_2G017100	Cucumber (Gy14) v1	cgycucB557
CsaV3_2G017100	Cucurbita maxima (Rimu)	cmacucB0652
CsaV3_2G017100	Cucurbita maxima (Rimu)	cmacucB0697
CsaV3_2G017100	Cucurbita maxima (Rimu)	cmacucB0777
CsaV3_2G017100	Cucurbita moschata (Rifu)	cmocucB0638
CsaV3_2G017100	Cucurbita moschata (Rifu)	cmocucB0682
CsaV3_2G017100	Cucurbita moschata (Rifu)	cmocucB0685
CsaV3_2G017100	Cucurbita pepo (Zucchini)	cpecucB0335
CsaV3_2G017100	Wild cucumber (PI 183967)	cpicucB080
CsaV3_2G017100	Bottle gourd (USVL1VR-Ls)	cuclsiB104
CsaV3_2G017100	Melon (DHL92) v3.5.1	cucmeB102
CsaV3_2G017100	Melon (DHL92) v3.5.1	cucmeB156
CsaV3_2G017100	Melon (DHL92) v3.6.1	cucmedB095
CsaV3_2G017100	Watermelon (Charleston Gray)	cucwcgB134
CsaV3_2G017100	Watermelon (97103) v1	cucwmB153
CsaV3_2G017100	Watermelon (97103) v2	cucwmbB120